| Literature DB >> 25789206 |
Mindi Zhao1, Xundou Li1, Menglin Li1, Youhe Gao2.
Abstract
Urine can be a better source than blood for biomarker discovery since it accumulates many changes. The urine proteome is susceptible to many factors, including anesthesia. Pentobarbital sodium and chloral hydrate are commonly used anesthetics in animal experiments. This study demonstrated the effects of these two anesthetics on the rat urine proteome using liquid chromatography-tandem mass spectrometry (LC-MS/MS). With anesthesia, the urinary protein-to-creatinine ratio of all rats increased twofold. The relative abundance of 22 and 23 urinary proteins were changed with pentobarbital sodium or chloral hydrate anesthesia, respectively, as determined by label-free quantification. Among these changed proteins, fifteen had been considered as candidate biomarkers such as uromodulin, and sixteen had been considered stable in healthy human urine, which are more likely to be considered as potential biomarkers when changed, such as transferrin. The pattern of changed urinary proteins provides clues to the discovery of urinary proteins regulatory mechanisms. When determining a candidate biomarker, anesthetic-related effects can be excluded from future biomarker discovery studies. Since anesthetics take effects via nervous system, this study is the first to provide clues that the protein handling function of the kidney may possibly be regulated by the nervous system.Entities:
Keywords: Anesthesia; Biomarkers; Urine proteome
Year: 2015 PMID: 25789206 PMCID: PMC4362303 DOI: 10.7717/peerj.813
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Urine protein-to-creatinine ratios before and after anesthesia (n = 6 each group).
Changes in the urine proteome identified by LC-MS/MS with two anesthetics.
| Pentobarbital sodium group fold change | Chloral hydrate group fold change | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Accession | Description | Rat 1 | Rat 2 | Rat 3 | Rat 7 | Rat 8 | Rat 9 | Candidate biomarkers | |
|
| Alpha-1-antiproteinase | 0.034 | 6.1↑ | 5.6↑ | 8.5↑ | 3.4↑ | 8↑ | 3.3↑ | Yes |
|
| Cathepsin L1 | 0.003 | 2.4↓ | 3.2↓ | 4↓ | 2.4↓ | 2↓ | 8.9↓ | Yes |
|
| Pro-epidermal growth factor | 0.001 | 2.5↓ | 2.8↓ | 3.4↓ | 5.4↓ | 3.3↓ | 2.1↓ | Yes |
|
| Kallikrein-1 | 0.002 | 2.1↓ | 3.3↓ | 3.3↓ | 7.5↓ | 2.7↓ | 2↓ | No |
|
| Matrix-remodeling-associated protein 8 | 0.006 | 2.8↓ | 3.1↓ | 2.6↓ | 9.3↓ | 5.3↓ | 2.8↓ | No |
|
| Polymeric immunoglobulin receptor | 0.020 | 2.6↓ | 2.3↓ | 2.2↓ | 3↓ | 2.7↓ | 2.8↓ | No |
|
| Uromodulin | 0.006 | 3↓ | 5.2↓ | 7↓ | 3.7↓ | 2↓ | 2.2↓ | Yes |
|
| Serum albumin | 0.042 | 5.5↑ | 3.1↑ | 5.4↑ | – | – | – | Yes |
|
| Serotransferrin | 0.049 | 6.8↑ | 2.1↑ | 4.3↑ | – | – | – | Yes |
|
| Complement factor D | 0.046 | 2.2↑ | 2.4↑ | 3.9↑ | – | – | – | No |
|
| Carboxylesterase 1C | 0.034 | 3.5↑ | 3.9↑ | 4.6↑ | – | – | – | No |
|
| Ig gamma-2B chain C region | 0.030 | 7.2↑ | 3.3↑ | 9.1↑ | – | – | – | No |
|
| Glutamyl aminopeptidase | 0.044 | 2.1↓ | 2.5↓ | 2.1↓ | – | – | – | No |
|
| Gamma-glutamyl hydrolase | 0.046 | 2.2↓ | 3↓ | 3.3↓ | – | – | – | Yes |
|
| Aminopeptidase N | 0.039 | 2.4↓ | 4.4↓ | 5.7↓ | – | – | – | Yes |
|
| CD44 antigen | 0.006 | 2.9↓ | 2.5↓ | 2.6↓ | – | – | – | No |
|
| Glandular kallikrein-7, submandibular/renal | 0.021 | 2.1↓ | 2.2↓ | 3.5↓ | – | – | – | Yes |
|
| Low-density lipoprotein receptor-related protein 2 | 0.004 | 2.1↓ | 3.6↓ | 2.1↓ | – | – | – | No |
|
| Meprin A subunit alpha | 0.000 | 2.7↓ | 3.6↓ | 3.4↓ | – | – | – | Yes |
|
| Meprin A subunit beta | 0.031 | 3.5↓ | 4.9↓ | 10.9↓ | – | – | – | No |
|
| Neutral and basic amino acid transport protein rBAT | 0.014 | 2.5↓ | 2.7↓ | 4.5↓ | – | – | – | Yes |
|
| Urokinase-type plasminogen activator | 0.048 | 2.5↓ | 2.2↓ | 2.7↓ | – | – | – | No |
|
| Alpha/beta hydrolase domain-containing protein 14B | 0.004 | – | – | – | 3.4↑ | 8↑ | 3.3↑ | No |
|
| Carboxypeptidase Q | 0.037 | – | – | – | 2.9↑ | 3.6↑ | 4.8↑ | No |
|
| Complement C4 | 0.028 | – | – | – | 11.2↑ | 3.1↑ | 14↑ | No |
|
| Nuclear transport factor 2 | 0.026 | – | – | – | 3.1↑ | 3.1↑ | 6.5↑ | No |
|
| Parvalbumin alpha | 0.047 | – | – | – | 5.9↑ | 5↑ | 12.5↑ | Yes |
|
| Retinoid-inducible serine | 0.019 | – | – | – | 4.2↑ | 4.2↑ | 4.7↑ | No |
|
| Sialate O-acetylesterase | 0.016 | – | – | – | 5↑ | 9.4↑ | 2.4↑ | No |
|
| Superoxide dismutase [Cu-Zn] | 0.019 | – | – | – | 2.6↑ | 4.9↑ | 3.1↑ | Yes |
|
| Apolipoprotein E | 0.032 | – | – | – | 2↓ | 5.2↓ | 3.3↓ | No |
|
| Cadherin-1 | 0.039 | – | – | – | 2.7↓ | 3.5↓ | 2.1↓ | Yes |
|
| Corticosteroid-binding globulin | 0.038 | – | – | – | 3.6↓ | 2.1↓ | 2.8↓ | No |
|
| Na(+)/H(+) exchange regulatory | 0.047 | – | – | – | 3.0↓ | 2.7↓ | 3.2↓ | Yes |
|
| Nidogen-1 (Fragment) | 0.020 | – | – | – | 4↓ | 2.5↓ | 4.1↓ | No |
|
| Nucleobindin-1 | 0.043 | – | – | – | 16.7↓ | 10.8↓ | 3.7↓ | No |
|
| Urinary protein 3 | 0.033 | – | – | – | 2.2↓ | 3.3↓ | 2.1↓ | No |
|
| Clusterin | 0.040 | – | – | – | 5.7↓ | 5.8↓ | 2.2↓ | No |
Notes.
“–” means no significant changes (fold changes >2 in all three samples).
Figure 2Semi-quantitative western blot analysis of two proteins.
(A) Levels of urinary transferrin before and after pentobarbital sodium anesthesia. (B) Levels of urinary alpha-1-antiproteinase before and after chloral hydrate anesthesia. (C) Quantitation of the transferrin by western blot analysis from 3 independent biological replicates. (D) Quantitation of the alpha-1-antiproteinase by western blot analysis from 3 independent biological replicates * indicates p < 0.05 (data were analyzed by t test).
Changed proteins with anesthesia which exist in human stable urinary proteome and their corresponding human orthologs.
| Group | Uniprot (rat) | Human ensembl | Uniprot (human) | Protein name | Related-disease |
|---|---|---|---|---|---|
| Both group |
|
|
| Uromodulin | Fanconi Syndrome ( |
|
|
|
| Kallikrein-1 | None | |
| Pentobarbital sodium group |
|
|
| Serotransferrin | Diabetic Nephropathy ( |
|
|
|
| Serum albumin | Nephrotoxicity ( | |
|
|
|
| Gamma-glutamyl hydrolase | Uranium Nephrotoxicity ( | |
|
|
|
| Neutral and basic amino acid transport protein rBAT | Sodium Loading ( | |
| Chloral hydrate group |
|
|
| Superoxide dismutase (Cu–Zn) | Nephritis ( |
|
|
|
| Putative uncharacterized protein | None | |
|
|
|
| Parvalbumin alpha | Skeletal Muscle Toxicity ( | |
|
|
|
| Corticosteroid-binding globulin | None | |
|
|
|
| E-cadherin | Diabetic Nephropathy ( | |
|
|
|
| Alpha/beta hydrolase domain-containing protein 14B | None | |
|
|
|
| Retinoid-inducible serine carboxypeptidase | None | |
|
|
|
| Apolipoprotein E | Bladder Cancer ( | |
|
|
|
| Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | Aldosteronism ( | |
|
|
|
| Nucleobindin-1 | None |