| Literature DB >> 25786244 |
Valerie N Babinsky1, Fadil M Hannan1, Sonia C Youhanna2, Céline Maréchal3, Michel Jadoul3, Olivier Devuyst4, Rajesh V Thakker1.
Abstract
BACKGROUND: Cardiovascular disease is the major cause of death in renal transplant recipients (RTRs) and linked to arterial calcification. The calcium-sensing receptor (CaSR), a G-protein coupled receptor, plays a pivotal role in extracellular calcium homeostasis and is expressed in the intimal and medial layers of the arterial wall. We investigated whether common CASR gene variants are predictors for aortic and coronary artery calcification or influence risk factors such as serum calcium, phosphate and glucose concentrations in RTRs.Entities:
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Year: 2015 PMID: 25786244 PMCID: PMC4364904 DOI: 10.1371/journal.pone.0119459
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Schematic representation of the genomic organisation of the CASR showing location of the six SNPs selected for analysis.
The CASR gene consists of 8 exons (1a, 1b, 2–7). The start (ATG) and stop (TGA) codons are in exons 2 and 7, respectively. Exons 1a, 1b, the 5’ portion of exon 2, and the 3’ portion of exon 7 are untranslated. The 3’ portion of exon 2, exons 3, 4, 5, 6 and the 5’ portion of exon 7, encode the extracellular domain (light grey), and the mid portion of exon 7 encodes the transmembrane (dark grey) and intracellular (black) domain. Three of the six SNPs are located in the CASR promoter region. rs115759455 and rs7652589 are located 13kbp upstream from the TATA box of promoter 1 (P1) and rs1501899 is located 4.6kbp downstream of promoter 2 (P2). The remaining three SNPs (rs1801725, rs1042636 and rs1801726) encoding single amino acid substitutions (A986S, R990G and Q1011E, respectively) are clustered in exon 7. The 5’ and 3’ untranslated regions are shown as white boxes. ECD, extracellular domain; TMD, transmembrane domain; ICD, intracellular domain.
Baseline clinical, biochemical and radiological characteristics of the Brussels Renal Transplant Cohort.
| Parameter | Value |
|---|---|
|
| |
| | 52.8 ± 12.6 |
| | 168 (59%) |
| | 26.4 ± 4.8 |
| | 7.8 ± 6.3 |
| | 44 (16%) |
| | 136 ± 20 |
| | 152 (54%) |
| | 70 (25%) |
| | 26 (9%) |
| | 43 (15%) |
|
| |
| | 122 ± 58 |
| | 56 ± 24 |
| | 5.7 ± 2.2 |
| | 5.3 ± 1.1 |
| | 2.4 ± 0.1 |
| | 1.0 ± 0.2 |
| | 5.7 ± 4.6 |
| | 42.8 ± 24.4 |
| | 86.7 ± 43.3 |
|
| |
| | 3309 ± 7101 |
| | 939 ± 1600 |
| | 63 (24%) |
| | 99 (37%) |
Results are presented as mean ± SD or the number of patients with the % of the total of number of patients shown in parentheses. AgS, Agatston score.
aNormal serum ranges: creatinine, 53–124 μmol/L; glucose, 3.8–6.1 mmol/L; total cholesterol, <5.0 mmol/L; total calcium, 2.10–2.50 mmol/L; phosphate, 0.77–1.50 mmol/L; intact parathyroid hormone, 1.0–6.5 pmol/L; 25-hydroxyvitamin D, 75–250 nmol/L; 1,25-dihydroxyvitamin D, 47–117 pmol/L.
CASR polymorphism genotype and allele frequencies in the Brussels Renal Transplant Cohort.
| SNP ID | Location | Nucleotide substitution | Amino acid substitution | Genotype frequencies | Allele frequencies | Hardy-Weinberg equilibrium |
|---|---|---|---|---|---|---|
| rs115759455 | 5’ UTR (c.-83867) | C > T | - | 0.91/0.08/0.01 | 0.95/0.05 | X2 = 3.13 ( |
| rs7652589 | 5’ UTR (c.-83707) | G > A | - | 0.41/0.44/0.15 | 0.63/0.37 | X2 = 1.12 ( |
| rs1501899 | 5’ UTR (c.-65467) | G > A | - | 0.42/0.45/0.13 | 0.64/0.36 | X2 = 0.44 ( |
| rs1801725 | Exon 7 (c.2956) | G > T | A986S | 0.76/0.22/0.02 | 0.87/0.13 | X2 = 0.56 ( |
| rs1042636 | Exon 7 (c.2968) | A > G | R990G | 0.88/0.11/0.01 | 0.94/0.06 | X2 = 0.87 ( |
| rs1801726 | Exon 7 (c.3031) | C > G | Q1011E | 0.93/0.07/0.0 | 0.97/0.03 | X2 = 0.38 ( |
Genotype frequencies are provided for homozygous major alleles, heterozygous alleles, and homozygous minor alleles, respectively in N = 284 subjects. Allelic frequencies are provided for major and minor alleles, respectively. UTR, untranslated region.
Univariate analysis of associations between CASR SNP genotypes and risk factors for aortic and coronary artery calcification.
| rs115759455 | rs7652589 | rs1501899 | A986S | R990G | Q1011E | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
|
|
| 259 | 2.38 ±0.14 |
| 116 | 2.38± 0.13 |
| 120 | 2.38 ± 0.13 |
| 217 | 2.37 ± 0.14 |
| 251 | 2.38 ± 0.14 |
| 264 | 2.38 ± 0.14 |
|
|
| 23 | 2.39 ± 0.16 |
| 124 | 2.37 ± 0.15 |
| 126 | 2.36 ± 0.15 |
| 61 | 2.39 ± 0.13 |
| 31 | 2.35 ± 0.13 |
| 20 | 2.4 2± 0.11 |
|
| 2 | - |
| 43 | 2.42 ± 0.11 |
| 38 | 2.42 ± 0.11 |
| 6 | 2.42 ± 0.12 |
| 2 | - |
| 0 | - | |
|
|
| 258 | 1.00 ±0.23 |
| 116 | 1.0 ± 0.2 |
| 120 | 1.0 ± 0.2 |
| 216 | 1.0 ± 0.3 |
| 250 | 1.01±0.25 |
| 263 | 1.0 ± 0.3 |
|
|
|
|
|
| 123 | 1.1 ± 0.3 |
| 125 | 1.1 ±0.3 |
| 61 | 1.0 ± 0.2 |
| 31 | 1.02 ± 0.19 |
| 20 | 1.0 ± 0.2 |
|
| 2 | - |
| 43 | 0.9 ± 0.2 |
| 38 | 1.0 0.2 |
| 6 | 0.94 ± 0.1 |
| 2 | - |
| 0 | - | |
|
|
| 259 | 5.7 ± 4.6 |
| 116 | 5.5 ± 4.1 |
| 120 | 5.5 ± 4.0 |
| 217 | 5.7 ± 4.9 |
| 251 | 5.7 ± 4.6 |
| 264 | 5.7 ± 4.7 |
|
|
| 23 | 6.0 ± 4.5 |
| 124 | 6.3 ± 5.4 |
| 126 | 6.2 ± 5.4 |
| 61 | 5.7 ± 3.6 |
| 31 | 5.8 ± 4.7 |
| 20 | 4.9 ± 2.3 |
|
| 2 | - |
| 43 | 4.6 ± 2.9 |
| 38 | 4.8 ± 3.1 |
| 6 | 4.7 ±4.3 |
| 2 | - |
| 0 | - | |
|
|
| 259 | 121.3 ± 56.3 |
| 116 | 124 ± 63 |
| 120 | 123 ± 62 |
| 217 | 125.3 ± 62.1 |
| 251 | 122.0 ± 59.2 |
| 264 | 122.3 ± 59.7 |
|
|
| 23 | 134.3 ± 79.1 |
| 124 | 126 ± 60 |
| 126 | 126 ± 59 |
| 61 | 111.1 ± 43.6 |
| 31 | 124.5 ± 52.9 |
| 20 | 118.6 ± 37.2 |
|
| 2 | - |
| 43 | 106 ± 36 |
| 38 | 106 ± 37 |
| 6 | 115.7 ± 35.6 |
| 2 | - |
| 0 | - | |
|
|
| 258 | 5.8 ± 2.3 |
| 116 | 5.9 ± 2.6 |
| 120 | 5.9 ± 2.6 |
| 216 | 5.7 ± 2.1 |
| 250 | 5.8 ± 2.3 |
| 263 | 5.7 ± 2.2 |
|
|
| 23 | 5.0 ± 0.6 |
| 123 | 5.5 ± 1.6 |
| 125 | 5.5 ± 1.6 |
| 61 | 5.6 ± 1.8 |
| 31 | 5.1 ± 0.6 |
| 20 | 6.1 ± 2.3 |
|
| 2 | - |
| 43 | 5.5 ± 2.3 |
| 38 | 5.6 ± 2.5 |
|
|
|
| 2 | - |
| 0 | - | |
|
|
| 253 | 5.3 ± 1.1 |
| 113 | 5.3 ± 1.1 |
| 117 | 5.3 ± 1.1 |
| 215 | 5.3 ± 1.1 |
| 244 | 5.3 ± 1.1 |
| 258 | 5.3 ± 1.1 |
|
|
| 22 | 5.3 ± 1.3 |
| 120 | 5.2 ± 1.1 |
| 122 | 5.2 ± 1.1 |
| 56 | 5.3 ± 1.1 |
| 31 | 4.9 ± 1.1 |
| 19 | 5.2 ± 1.5 |
|
| 2 | - |
| 43 | 5.4 ± 1.2 |
| 38 | 5.4 ± 1.2 |
| 6 | 4.9 ± 0.7 |
| 2 | - |
| 0 | - | |
|
|
| 249 | 86.9 ± 41.9 |
| 115 | 89.6 ± 43.4 |
| 118 | 89.9 ± 43.8 |
| 209 | 88.3 ± 42.3 |
| 241 | 86.3 ± 44.6 |
| 254 | 86.6 ± 43.5 |
|
|
| 22 | 85.2 ± 58.2 |
| 116 | 81.5 ± 44.4 |
| 119 | 80.5 ± 43.5 |
| 58 | 84.2 ± 46.9 |
| 31 | 89.9 ± 32.1 |
| 19 | 87.4 ± 41.3 |
|
| 2 | - |
| 41 | 93.1 ± 38.9 |
| 36 | 96.4 ± 38.5 |
| 6 | 55.4 ± 31.7 |
| 1 | - |
| 0 | - | |
|
|
| 259 | 136 ± 21 |
| 116 | 135 ± 20 |
| 120 | 135 ± 20 |
| 217 | 137 ± 21 |
| 251 | 137 ± 20 |
| 264 | 136 ± 21 |
|
|
| 23 | 133 ± 17 |
| 124 | 138 ± 20 |
| 126 | 139 ± 21 |
| 61 | 134 ± 17 |
| 31 | 132 ± 31 |
| 20 | 137 ± 17 |
|
|
| 2 | - |
| 43 | 131 ± 22 |
| 38 | 129 ± 20 |
| 6 | 126 ± 10 |
| 2 | - |
| 0 | - |
Results are shown as mean ± SD; −, indicates values not provided. Individual SNP genotypes that were present in N ≤3 individuals were excluded from analysis. Associations at the P ≤0.2 statistical level and used for multivariate modelling are highlighted in bold. Calcium, serum total calcium (mmol/L); Phosphate, serum phosphate (mmol/L); PTH, serum intact parathyroid hormone; Creatinine, serum creatinine; Glucose, serum glucose; Cholesterol, serum total cholesterol; 1,25 Vitamin D, 1,25-dihydroxyvitamin D. The genotypic alleles of the A986S, R990G and Q1011E coding region SNPs are represented by amino acids.
Univariate analysis of associations between CASR SNP genotypes and occurrence of arterial calcification or cardiovascular (CV) events.
| rs115759455 | rs7652589 | rs1501899 | A986S | R990G | Q1011E | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
|
|
| 245 | 3505 ± 7349 |
| 110 | 3274 ± 7904 |
| 112 | 3288 ± 7841 |
| 205 | 2967 ± 6253 |
| 235 | 3447 ± 7245 |
| 250 | 3307 ± 7196 |
|
|
| 20 | 1052 ± 1855 |
| 116 | 3660 ± 6531 |
| 119 | 3783 ± 6799 |
| 56 | 4800 ± 9724 |
| 30 | 2323 ± 5979 |
| 17 | 3136 ± 5467 |
|
|
| 2 | - |
| 41 | 2327 ± 6334 |
| 36 | 1715 ± 5282 |
| 6 | 508 ± 471 |
| 2 | - |
| 0 | - |
|
|
| 244 | 965 ± 1635 |
| 110 | 890 ± 1698 |
| 112 | 925 ± 1699 |
| 205 | 959 ± 1606 |
| 234 | 971 ± 1639 |
| 249 | 902 ± 1568 |
|
|
| 20 | 703 ± 1162 |
| 115 | 1064 ± 1560 |
| 119 | 1058 ± 1574 |
| 56 | 886 ± 1652 |
| 30 | 755 ± 1306 |
| 17 | 1477 ± 1989 |
|
|
| 2 | - |
| 41 | 722 ± 1434 |
| 36 | 594 ± 1328 |
| 6 | 752 ± 886 |
| 2 | - |
| 0 | - |
|
|
| 170 | 69 ± 2012 |
| 84 | 71 ± 1259 |
| 85 | 51 ± 1255 |
| 144 | 179 ± 1798 |
| 164 | 14 ± 1973 |
| 177 | 94 ± 1943 |
|
|
| 17 | 361 ± 1067 |
| 74 | 170 ± 2407 |
| 75 | 296 ± 2523 |
| 40 | -211 ± 2459 |
| 21 | 754 ± 1709 |
| 10 | 135 ± 2086 |
|
| 0 | - |
| 29 | -21 ± 2299 |
| 27 | -319 ± 1881 |
| 3 | - |
| 2 | - |
| 0 | - | |
|
|
| 170 | 363 ± 1462 |
| 84 | 381 ± 1807 |
| 85 | 383 ± 1796 |
| 144 | 350 ± 1478 |
| 164 | 333 ± 1413 |
| 177 | 357 ± 1431 |
|
|
| 17 | 375 ± 685 |
| 74 | 436 ± 1123 |
| 75 | 449 ± 1127 |
| 40 | 360 ± 1115 |
| 21 | 646 ± 1432 |
| 10 | 490 ± 956 |
|
| 0 | - |
| 29 | 134 ± 371 |
| 27 | 74 ± 193 |
| 3 | - |
| 2 | - |
| 0 | - | |
|
|
| 259 | 80 (31%) |
| 116 | 33 (28%) |
| 120 | 34 (28%) |
| 217 | 63 (29%) |
| 251 | 79 (32%) |
| 264 | 77 (29%) |
|
| 23 | 4 (17%) |
| 124 | 41 (33%) |
| 126 | 42 (33%) |
| 61 | 21 (34%) |
| 31 | 5 (16%) |
| 20 | 7 (35%) | |
|
| 2 | - |
| 43 | 9 (21%) |
| 38 | 8 (21%) |
| 6 | 0 |
| 2 | - |
| 0 | - | |
Aortic calcification (AoC) and coronary artery calcification (CAC) scores are provided at baseline in Agatston units (AgS), and the incremental change in AoC and CAC scores observed at the follow-up visit (after a mean period of 4.4 ± 0.3 years) are also provided. Results are shown as mean ± SD or N (%); −, indicates values not provided. Individual SNP genotypes that were present in N ≤3 individuals were excluded from analysis. The genotypic alleles of the A986S, R990G and Q1011E coding region SNPs are represented by amino acids.
Comparison of CASR SNP genotypes in patients with low and high levels of aortic calcification (AoC) and coronary artery calcification (CAC).
| AoC | CAC | |||
|---|---|---|---|---|
| <600mg | >600mg | <100mg | >100mg | |
| rs115759455 | ||||
| CC | 185 (91%) | 60 (95%) | 151 (90%) | 94 (95%) |
| CT | 17 (8%) | 3 (5%) | 15 (9%) | 5 (5%) |
| TT | 2 (1%) | 0 | 2 (1%) | 0 |
|
| - | 1.0 | - | 1.0 |
| rs7652589 | ||||
| GG | 88 (43%) | 22 (35%) | 74 (44%) | 36 (36%) |
| GA | 81 (40%) | 35 (56%) | 63 (38%) | 53 (54%) |
| AA | 35 (17%) | 6 (10%) | 31 (18%) | 10 (10%) |
|
| - | 0.40 | - | 0.15 |
| rs1501899 | ||||
| GG | 88 (43%) | 24 (38%) | 73 (43%) | 39 (39%) |
| GA | 84 (41%) | 35 (56%) | 66 (39%) | 53 (39%) |
| AA | 32 (16%) | 4 (6%) | 29 (17%) | 7 (39%) |
|
| - | 0.36 | - | 0.11 |
| A986S | ||||
| AA | 158 (77%) | 47 (75%) | 127 (%) | 78 (79%) |
| AS | 40 (20%) | 16 (25%) | 38 (%) | 12 (12%) |
| SS | 6 (3%) | - | 3 (%) | 3 (3%) |
|
| - | 1.0 | - | 1.0 |
| R990G | ||||
| RR | 176 (86%) | 59 (94%) | 147 (88%) | 88 (89%) |
| RG | 26 (13%) | 4 (6%) | 19 (11%) | 11 (11%) |
| GG | 2 (1%) | - | 2 (1%) | - |
|
| - | 1.0 | - | 1.0 |
| Q1011E | ||||
| 192 (94%) | 58 (92%) | 159 (95%) | 91 (92%) | |
| QE | 12 (6%) | 5 (8%) | 9 (5%) | 8 (8%) |
| EE | - | - | - | - |
|
| - | 1.0 | - | 1.0 |
Results are shown as N (%). P-values (P) represent a Chi-squared analysis of the <600mg AoC group (N = 204) versus the >600mg AoC group (N = 63) and <100mg CAC group (N = 168) versus the >100mg CAC group (N = 99), respectively. All values are shown following Bonferroni correction. −, indicates values not provided. The genotypic alleles of the A986S, R990G and Q1011E coding region SNPs are represented by amino acids.
Significant determinants of serum glucose and phosphate concentrations.
| Step number | Parameter | B | 95% CI |
|
|---|---|---|---|---|
|
| ||||
|
| Diabetes | 0.203 | 0.166 to 0.240 | <0.0001 |
|
| A986S (SS) | 0.126 | 0.039 to 0.214 | <0.05 |
|
| ||||
|
| eGFR | -0.147 | -0.208 to -0.086 | <0.0001 |
|
| Calcium | -0.851 | -1.259 to -0.422 | <0.0001 |
|
| 1,25-dihydroxyvitamin D | -0.077 | -0.123 to -0.030 | 0.001 |
|
| rs115759455 (CT) | 0.051 | 0.009 to 0.093 | <0.05 |
|
| Parathyroid hormone | -0.049 | -0.088 to -0.010 | <0.05 |
All parameters scoring P ≤0.2 in univariate analyses underwent multivariate modelling and correction for the influence of potentially confounding parameters. Confounding parameters for serum glucose concentration entered into the multivariate stepwise linear regression model were gender, the presence of diabetes, age, body mass index, glucocorticoid and tacrolimus therapy, and transplantation vintage. Serum phosphate concentrations were adjusted for the effect of estimated glomerular filtration rate (eGFR), creatinine, calcium, 1,25-dihydroxyvitamin D, gender, parathyroid hormone concentrations, and calcium and vitamin D supplementation. Multivariate modelling demonstrated the presence of diabetes and the homozygous minor allele of the A986S SNP as independent predictors of serum glucose concentrations. Estimated GFR, serum calcium, parathyroid hormone, 1,25-dihydroxyvitamin D concentrations and the heterozygous form of the rs115759455 SNP were revealed to be independent predictors of serum phosphate concentrations. P-values (P) are displayed following Bonferroni correction. B, regression coefficient; CI, confidence interval.