Literature DB >> 25784767

Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches.

Gunseli Bayram Akcapinar1, Alessandro Venturini2, Pier Luigi Martelli3, Rita Casadio3, Ugur O Sezerman4.   

Abstract

In the last decades, effective cellulose degradation became a major point of interest due to the properties of cellulose as a renewable energy source and the widespread application of cellulases (the cellulose degrading enzymes) in many industrial processes. Effective bioconversion of lignocellulosic biomass into soluble sugars for ethanol production requires use of thermostable and highly active cellulases. The library of current cellulases includes enzymes that can work at acidic and neutral pH in a wide temperature range. However, only few cellulases are reported to be thermostable. In order to alleviate this, we have performed a hybrid approach for the thermostabilization of a key cellulase, Endoglucanase I (EGI) from Trichoderma reesei. We combined in silico and in vitro experiments to modulate the thermostability of EGI. Four different predictive algorithms were used to set up a library of mutations. Three thermostabilizer mutations (Q126F, K272F, Q274V) were selected and molecular dynamics simulations at room temperature and high temperatures were performed to analyze the effect of the mutations on enzyme structure and stability. The mutations were then introduced into the endoglucanase 1 gene, using site-directed mutagenesis, and the effect of the mutations on enzyme structure and stability were determined. MD simulations supported the fact that Q126F, K272F and Q274V mutations have a thermostabilizing effect on the protein structure. Experimental studies validated that all of the mutants exhibited higher thermostability compared with native EGI albeit with a decrease in specific activity.
© The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Trichoderma reese; cellulase; endoglucanase 1; molecular dynamics; protein engineering

Mesh:

Substances:

Year:  2015        PMID: 25784767     DOI: 10.1093/protein/gzv012

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  5 in total

1.  Investigating the structural properties of the active conformation BTL2 of a lipase from Geobacillus thermocatenulatus in toluene using molecular dynamic simulations and engineering BTL2 via in-silico mutation.

Authors:  Aslı Yenenler; Alessandro Venturini; Huseyin Cahit Burduroglu; Osman Uğur Sezerman
Journal:  J Mol Model       Date:  2018-08-10       Impact factor: 1.810

2.  Cloning, Production and Characterization of a Glycoside Hydrolase Family 7 Enzyme from the Gut Microbiota of the Termite Coptotermes curvignathus.

Authors:  James Sy-Keen Woon; Patricia Jie Hung King; Mukram Mohamed Mackeen; Nor Muhammad Mahadi; Wan Mohd Khairulikhsan Wan Seman; William J Broughton; Abdul Munir Abdul Murad; Farah Diba Abu Bakar
Journal:  Mol Biotechnol       Date:  2017-07       Impact factor: 2.695

Review 3.  Genetically Engineered Proteins to Improve Biomass Conversion: New Advances and Challenges for Tailoring Biocatalysts.

Authors:  Lucas Ferreira Ribeiro; Vanesa Amarelle; Luana de Fátima Alves; Guilherme Marcelino Viana de Siqueira; Gabriel Lencioni Lovate; Tiago Cabral Borelli; María-Eugenia Guazzaroni
Journal:  Molecules       Date:  2019-08-08       Impact factor: 4.411

4.  Computational and nonglycosylated systems: a simpler approach for development of nanosized PEGylated proteins.

Authors:  Hadi Mirzaei; Bahram Kazemi; Mojgan Bandehpour; Alireza Shoari; Vahid Asgary; Mehdi Shafiee Ardestani; Armin Madadkar-Sobhani; Reza Ahangari Cohan
Journal:  Drug Des Devel Ther       Date:  2016-03-16       Impact factor: 4.162

Review 5.  Engineering Robust Cellulases for Tailored Lignocellulosic Degradation Cocktails.

Authors:  Francisca Contreras; Subrata Pramanik; Aleksandra M Rozhkova; Ivan N Zorov; Olga Korotkova; Arkady P Sinitsyn; Ulrich Schwaneberg; Mehdi D Davari
Journal:  Int J Mol Sci       Date:  2020-02-26       Impact factor: 5.923

  5 in total

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