Literature DB >> 25780733

Error estimation for reconstruction of neuronal spike firing from fast calcium imaging.

Xiuli Liu1, Xiaohua Lv1, Tingwei Quan2, Shaoqun Zeng1.   

Abstract

Calcium imaging is becoming an increasingly popular technology to indirectly measure activity patterns in local neuronal networks. Calcium transients reflect neuronal spike patterns allowing for spike train reconstructed from calcium traces. The key to judging spiking train authenticity is error estimation. However, due to the lack of an appropriate mathematical model to adequately describe this spike-calcium relationship, little attention has been paid to quantifying error ranges of the reconstructed spike results. By turning attention to the data characteristics close to the reconstruction rather than to a complex mathematic model, we have provided an error estimation method for the reconstructed neuronal spiking from calcium imaging. Real false-negative and false-positive rates of 10 experimental Ca(2+) traces were within the estimated error ranges and confirmed that this evaluation method was effective. Estimation performance of the reconstruction of spikes from calcium transients within a neuronal population demonstrated a reasonable evaluation of the reconstructed spikes without having real electrical signals. These results suggest that our method might be valuable for the quantification of research based on reconstructed neuronal activity, such as to affirm communication between different neurons.

Entities:  

Keywords:  (100.3190) Inverse problems; (170.2655) Functional monitoring and imaging; (170.3010) Image reconstruction techniques

Year:  2015        PMID: 25780733      PMCID: PMC4354587          DOI: 10.1364/BOE.6.000421

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  27 in total

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Authors:  Tingwei Quan; Xiuli Liu; Xiaohua Lv; Wei R Chen; Shaoqun Zeng
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Journal:  J Neurosci Methods       Date:  2006-02-03       Impact factor: 2.390

3.  Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging.

Authors:  Emre Yaksi; Rainer W Friedrich
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

4.  Population imaging of ongoing neuronal activity in the visual cortex of awake rats.

Authors:  David S Greenberg; Arthur R Houweling; Jason N D Kerr
Journal:  Nat Neurosci       Date:  2008-06-15       Impact factor: 24.884

Review 5.  Optical probing of neuronal ensemble activity.

Authors:  Benjamin F Grewe; Fritjof Helmchen
Journal:  Curr Opin Neurobiol       Date:  2009-10-23       Impact factor: 6.627

6.  Detection of spontaneous synaptic events with an optimally scaled template.

Authors:  J D Clements; J M Bekkers
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

7.  Ca2+ buffering and action potential-evoked Ca2+ signaling in dendrites of pyramidal neurons.

Authors:  F Helmchen; K Imoto; B Sakmann
Journal:  Biophys J       Date:  1996-02       Impact factor: 4.033

8.  Detecting action potentials in neuronal populations with calcium imaging.

Authors:  D Smetters; A Majewska; R Yuste
Journal:  Methods       Date:  1999-06       Impact factor: 3.608

9.  Quantifying bursting neuron activity from calcium signals using blind deconvolution.

Authors:  In Jun Park; Yuriy V Bobkov; Barry W Ache; Jose C Principe
Journal:  J Neurosci Methods       Date:  2013-05-24       Impact factor: 2.390

10.  Imaging large-scale neural activity with cellular resolution in awake, mobile mice.

Authors:  Daniel A Dombeck; Anton N Khabbaz; Forrest Collman; Thomas L Adelman; David W Tank
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

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  1 in total

1.  Reconstruction of burst activity from calcium imaging of neuronal population via Lq minimization and interval screening.

Authors:  Tingwei Quan; Xiaohua Lv; Xiuli Liu; Shaoqun Zeng
Journal:  Biomed Opt Express       Date:  2016-05-05       Impact factor: 3.732

  1 in total

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