Literature DB >> 25777625

HLA typing using next generation sequencing: An overview.

Henry A Erlich1.   

Abstract

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Year:  2015        PMID： 25777625     DOI： 10.1016/j.humimm.2015.03.001

Source DB:  PubMed          Journal:  Hum Immunol        ISSN： 0198-8859            Impact factor:   2.850


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  14 in total

1.  Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.

Authors:  Steven J Mack; Robert P Milius; Benjamin D Gifford; Jürgen Sauter; Jan Hofmann; Kazutoyo Osoegawa; James Robinson; Mathijs Groeneweg; Gregory S Turenchalk; Alex Adai; Cherie Holcomb; Erik H Rozemuller; Maarten T Penning; Michael L Heuer; Chunlin Wang; Marc L Salit; Alexander H Schmidt; Peter R Parham; Carlheinz Müller; Tim Hague; Gottfried Fischer; Marcelo Fernandez-Viňa; Jill A Hollenbach; Paul J Norman; Martin Maiers
Journal:  Hum Immunol       Date:  2015-09-25       Impact factor: 2.850

2.  Genotyping of canine MHC gene DLA-88 by next-generation sequencing reveals high frequencies of new allele discovery and gene duplication.

Authors:  Chul-Woo Pyo; Michael A Harkey; Beverly Torok-Storb; Rainer Storb; Ruihan Wang; Alexander S Thomas; Wyatt C Nelson; Daniel E Geraghty
Journal:  HLA       Date:  2022-08-09       Impact factor: 8.762

3.  HLA Haplotype Validator for quality assessments of HLA typing.

Authors:  Kazutoyo Osoegawa; Steven J Mack; Julia Udell; David A Noonan; Steven Ozanne; Elizabeth Trachtenberg; Matthew Prestegaard
Journal:  Hum Immunol       Date:  2015-11-10       Impact factor: 2.850

4.  HLA imputation in an admixed population: An assessment of the 1000 Genomes data as a training set.

Authors:  Kelly Nunes; Xiuwen Zheng; Margareth Torres; Maria Elisa Moraes; Bruno Z Piovezan; Gerlandia N Pontes; Lilian Kimura; Juliana E P Carnavalli; Regina C Mingroni Netto; Diogo Meyer
Journal:  Hum Immunol       Date:  2015-11-12       Impact factor: 2.850

Review 5.  Quality control project of NGS HLA genotyping for the 17th International HLA and Immunogenetics Workshop.

Authors:  Kazutoyo Osoegawa; Tamara A Vayntrub; Sabine Wenda; Dianne De Santis; Konstantinos Barsakis; Milena Ivanova; Susan Hsu; Jonathan Barone; Rhonda Holdsworth; Mary Diviney; Medhat Askar; Amanda Willis; Dawn Railton; Sophie Laflin; Ketevan Gendzekhadze; Arisa Oki; Nicoletta Sacchi; Michela Mazzocco; Marco Andreani; Reem Ameen; Catherine Stavropoulos-Giokas; Amalia Dinou; Margareth Torres; Rodrigo Dos Santos Francisco; Carles Serra-Pages; Damian Goodridge; Sandra Balladares; Maria P Bettinotti; Brian Iglehart; Zahra Kashi; Russell Martin; Chee Loong Saw; Jiannis Ragoussis; Jonathan Downing; Cristina Navarrete; Winnie Chong; Katsuyuki Saito; Martin Petrek; Stana Tokic; Karin Padros; Ma Beatriz Rodriguez; Viktoria Zakharova; Olga Shragina; Susana R Marino; Nicholas K Brown; Takashi Shiina; Shingo Suzuki; Eric Spierings; Qiuheng Zhang; Yuxin Yin; Gerald P Morris; Ana Hernandez; Phillip Ruiz; Seik-Soon Khor; Katsushi Tokunaga; Aviva Geretz; Rasmi Thomas; Fumiko Yamamoto; Kalyan C Mallempati; Sridevi Gangavarapu; Uma Kanga; Shweta Tyagi; Steven G E Marsh; Will P Bultitude; Xiangjun Liu; Dajiang Cao; Maarten Penning; Carolyn K Hurley; Anne Cesbron; Claudia Mueller; Joannis Mytilineos; Eric T Weimer; Mats Bengtsson; Gottfried Fischer; John A Hansen; Chia-Jung Chang; Steven J Mack; Lisa E Creary; Marcelo A Fernandez-Viña
Journal:  Hum Immunol       Date:  2019-02-06       Impact factor: 2.850

6.  High-resolution HLA allele and haplotype frequencies in several unrelated populations determined by next generation sequencing: 17th International HLA and Immunogenetics Workshop joint report.

Authors:  Lisa E Creary; Nicoletta Sacchi; Michela Mazzocco; Gerald P Morris; Gonzalo Montero-Martin; Winnie Chong; Colin J Brown; Amalia Dinou; Catherine Stavropoulos-Giokas; Clara Gorodezky; Saranya Narayan; Srinivasan Periathiruvadi; Rasmi Thomas; Dianne De Santis; Jennifer Pepperall; Gehad E ElGhazali; Zain Al Yafei; Medhat Askar; Shweta Tyagi; Uma Kanga; Susana R Marino; Dolores Planelles; Chia-Jung Chang; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2021-05-24       Impact factor: 2.211

Review 7.  A long road/read to rapid high-resolution HLA typing: The nanopore perspective.

Authors:  Chang Liu
Journal:  Hum Immunol       Date:  2020-05-01       Impact factor: 2.211

8.  Accuracy of Programs for the Determination of Human Leukocyte Antigen Alleles from Next-Generation Sequencing Data.

Authors:  Antti Larjo; Robert Eveleigh; Elina Kilpeläinen; Tony Kwan; Tomi Pastinen; Satu Koskela; Jukka Partanen
Journal:  Front Immunol       Date:  2017-12-13       Impact factor: 7.561

9.  Deciphering the fine nucleotide diversity of full HLA class I and class II genes in a well-documented population from sub-Saharan Africa.

Authors:  T Goeury; L E Creary; L Brunet; M Galan; M Pasquier; B Kervaire; A Langaney; J-M Tiercy; M A Fernández-Viña; J M Nunes; A Sanchez-Mazas
Journal:  HLA       Date:  2018-01       Impact factor: 4.513

10.  Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany.

Authors:  C J Hernández-Frederick; N Cereb; A S Giani; J Ruppel; A Maraszek; J Pingel; J Sauter; A H Schmidt; S Y Yang
Journal:  HLA       Date:  2016-01       Impact factor: 4.513
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