Literature DB >> 25772964

Evolution of DNA sequencing.

Hamid Nawaz Tipu1, Ambreen Shabbir2.   

Abstract

Sanger and coworkers introduced DNA sequencing in 1970s for the first time. It principally relied on termination of growing nucleotide chain when a dideoxythymidine triphosphate (ddTTP) was inserted in it. Detection of terminated sequences was done radiographically on Polyacrylamide Gel Electrophoresis (PAGE). Improvements that have evolved over time in original Sanger sequencing include replacement of radiography with fluorescence, use of separate fluorescent markers for each nucleotide, use of capillary electrophoresis instead of polyacrylamide gel electrophoresis and then introduction of capillary array electrophoresis. However, this technique suffered from few inherent limitations like decreased sensitivity for low level mutant alleles, complexities in analyzing highly polymorphic regions like Major Histocompatibility Complex (MHC) and high DNA concentrations required. Several Next Generation Sequencing (NGS) technologies have been introduced by Roche, Illumina and other commercial manufacturers that tend to overcome Sanger sequencing limitations and have been reviewed. Introduction of NGS in clinical research and medical diagnostics is expected to change entire diagnostic approach. These include study of cancer variants, detection of minimal residual disease, exome sequencing, detection of Single Nucleotide Polymorphisms (SNPs) and their disease association, epigenetic regulation of gene expression and sequencing of microorganisms genome.

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Year:  2015        PMID: 25772964     DOI: 03.2015/JCPSP.210215

Source DB:  PubMed          Journal:  J Coll Physicians Surg Pak        ISSN: 1022-386X            Impact factor:   0.711


  2 in total

Review 1.  Next Generation Sequencing in Clinical Oncology: Applications, Challenges and Promises: A Review Article.

Authors:  Faezeh Shabani Azim; Hamidreza Houri; Zohreh Ghalavand; Bahram Nikmanesh
Journal:  Iran J Public Health       Date:  2018-10       Impact factor: 1.429

Review 2.  Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.

Authors:  Yohannis Wondwosen Ahmed; Berhan Ababaw Alemu; Sisay Addisu Bekele; Solomon Tebeje Gizaw; Muluken Fekadie Zerihun; Endriyas Kelta Wabalo; Maria Degef Teklemariam; Tsehayneh Kelemu Mihrete; Endris Yibru Hanurry; Tensae Gebru Amogne; Assaye Desalegne Gebrehiwot; Tamirat Nida Berga; Ebsitu Abate Haile; Dessiet Oma Edo; Bizuwork Derebew Alemu
Journal:  Clin Epigenetics       Date:  2022-08-27       Impact factor: 7.259

  2 in total

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