Literature DB >> 25764112

Single molecule studies of RNA polymerase II transcription in vitro.

Abigail E Horn1, James A Goodrich, Jennifer F Kugel.   

Abstract

Eukaryotic mRNA transcription by RNA polymerase II (RNAP II) is the first step in gene expression and a key determinant of cellular regulation. Elucidating the mechanism by which RNAP II synthesizes RNA is therefore vital to determining how genes are controlled under diverse biological conditions. Significant advances in understanding RNAP II transcription have been achieved using classical biochemical and structural techniques; however, aspects of the transcription mechanism cannot be assessed using these approaches. The application of single-molecule techniques to study RNAP II transcription has provided new insight only obtainable by studying molecules in this complex system one at a time.

Keywords:  FRET; RNA polymerase II; TIRF; fluorescence; optical tweezers; single-molecule; transcription

Mesh:

Substances:

Year:  2014        PMID: 25764112      PMCID: PMC4214229          DOI: 10.4161/trns.27608

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  35 in total

1.  A transcription reinitiation intermediate that is stabilized by activator.

Authors:  N Yudkovsky; J A Ranish; S Hahn
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

2.  Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Authors:  A L Gnatt; P Cramer; J Fu; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

3.  Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution.

Authors:  P Cramer; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

4.  Rational design of a super core promoter that enhances gene expression.

Authors:  Tamar Juven-Gershon; Susan Cheng; James T Kadonaga
Journal:  Nat Methods       Date:  2006-11       Impact factor: 28.547

Review 5.  Single-molecule studies of RNA polymerases.

Authors:  Jens Michaelis; Barbara Treutlein
Journal:  Chem Rev       Date:  2013-09-23       Impact factor: 60.622

6.  Recycling of the general transcription factors during RNA polymerase II transcription.

Authors:  L Zawel; K P Kumar; D Reinberg
Journal:  Genes Dev       Date:  1995-06-15       Impact factor: 11.361

7.  Evidence of DNA bending in transcription complexes imaged by scanning force microscopy.

Authors:  W A Rees; R W Keller; J P Vesenka; G Yang; C Bustamante
Journal:  Science       Date:  1993-06-11       Impact factor: 47.728

Review 8.  The general transcription machinery and general cofactors.

Authors:  Mary C Thomas; Cheng-Ming Chiang
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 May-Jun       Impact factor: 8.250

9.  A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains.

Authors:  A Goppelt; G Stelzer; F Lottspeich; M Meisterernst
Journal:  EMBO J       Date:  1996-06-17       Impact factor: 11.598

10.  Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching.

Authors:  Andrey Revyakin; Chenyu Liu; Richard H Ebright; Terence R Strick
Journal:  Science       Date:  2006-11-17       Impact factor: 47.728

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