Literature DB >> 25763493

Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis.

Xiao-Ning Zhang1, Cecilia Mo, Wesley M Garrett, Bret Cooper.   

Abstract

RNA splicing is crucial to the production of mature mRNAs (mRNA). In Arabidopsis thaliana, the protein Arginine/Serine-rich 45 (SR45) acts as an RNA splicing activator and initiates the spliceosome assembly. SR45 is alternatively spliced into 2 isoforms. Isoform 1 (SR45.1) plays an important role in the flower petal development whereas isoform 2 (SR45.2) is important for root growth. In this study, we used immunoprecipitation to isolate an SR45.1-GFP fusion protein from transgenic plants complementing a null mutant, sr45-1. Mass spectrometry suggested a single phosphorylation event in a peptide from the alternatively spliced region unique to SR45.1. Substituting alanine for threonine 218, a candidate site for phosphorylation, did not complement the sr45-1 mutant with narrow flower petals whereas substituting aspartic acid or glutamic acid for threonine 218 did complement the sr45-1 mutant. Mass spectrometry also revealed that other proteins involved in the spliceosome co-precipitated with SR45.1, and RT-qPCR revealed that phosphorylation of threonine 218 promotes the function of SR45.1 in promoting the constitutive splicing of SR30 mRNA. This is the first demonstration of a specific phosphorylation site that differentially regulates the function of a plant splicing activator in physiologically and morphologically distinct plant tissues.

Entities:  

Keywords:  Co-immunoprecipitation; U5 small nuclear ribonucleoprotein; flower petal development; protein phosphorylation; regulation of RNA splicing

Mesh:

Substances:

Year:  2014        PMID: 25763493      PMCID: PMC4203572          DOI: 10.4161/psb.29134

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  30 in total

1.  Purification and characterization of human RNPS1: a general activator of pre-mRNA splicing.

Authors:  A Mayeda; J Badolato; R Kobayashi; M Q Zhang; E M Gardiner; A R Krainer
Journal:  EMBO J       Date:  1999-08-16       Impact factor: 11.598

2.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

3.  An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein.

Authors:  M Golovkin; A S Reddy
Journal:  J Biol Chem       Date:  1999-12-17       Impact factor: 5.157

4.  The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis.

Authors:  Israel Ausin; Maxim V C Greenberg; Carey Fei Li; Steven E Jacobsen
Journal:  Epigenetics       Date:  2012-01-01       Impact factor: 4.528

5.  Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using collision induced dissociation-MS/MS and MS3.

Authors:  Amanda M Palumbo; Gavin E Reid
Journal:  Anal Chem       Date:  2008-12-15       Impact factor: 6.986

6.  Stalled spliceosomes are a signal for RNAi-mediated genome defense.

Authors:  Phillip A Dumesic; Prashanthi Natarajan; Changbin Chen; Ines A Drinnenberg; Benjamin J Schiller; James Thompson; James J Moresco; John R Yates; David P Bartel; Hiten D Madhani
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

7.  Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1.

Authors:  J Lykke-Andersen; M D Shu; J A Steitz
Journal:  Science       Date:  2001-09-07       Impact factor: 47.728

8.  Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing.

Authors:  Irene S Day; Maxim Golovkin; Saiprasad G Palusa; Alicia Link; Gul S Ali; Julie Thomas; Dale N Richardson; Anireddy S N Reddy
Journal:  Plant J       Date:  2012-06-28       Impact factor: 6.417

9.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Authors:  Yamile Marquez; John W S Brown; Craig Simpson; Andrea Barta; Maria Kalyna
Journal:  Genome Res       Date:  2012-03-05       Impact factor: 9.043

10.  Analyses of in vivo interaction and mobility of two spliceosomal proteins using FRAP and BiFC.

Authors:  Gul Shad Ali; K V S K Prasad; M Hanumappa; A S N Reddy
Journal:  PLoS One       Date:  2008-04-16       Impact factor: 3.240

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  12 in total

1.  The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.

Authors:  Raquel F Carvalho; Dóra Szakonyi; Craig G Simpson; Inês C R Barbosa; John W S Brown; Elena Baena-González; Paula Duque
Journal:  Plant Cell       Date:  2016-07-19       Impact factor: 11.277

2.  Dynamic Distribution and Interaction of the Arabidopsis SRSF1 Subfamily Splicing Factors.

Authors:  Nancy Stankovic; Marie Schloesser; Marine Joris; Eric Sauvage; Marc Hanikenne; Patrick Motte
Journal:  Plant Physiol       Date:  2015-12-23       Impact factor: 8.340

3.  Insights into sweet potato SR proteins: from evolution to species-specific expression and alternative splicing.

Authors:  Shanlan Chen; Yujian Mo; Yingjie Zhang; Hongbao Zhu; Yu Ling
Journal:  Planta       Date:  2022-09-09       Impact factor: 4.540

4.  Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing.

Authors:  Denghui Xing; Yajun Wang; Michael Hamilton; Asa Ben-Hur; Anireddy S N Reddy
Journal:  Plant Cell       Date:  2015-11-24       Impact factor: 11.277

5.  The Arabidopsis splicing regulator SR45 confers salt tolerance in a splice isoform-dependent manner.

Authors:  Mohammed Albaqami; K Laluk; Anireddy S N Reddy
Journal:  Plant Mol Biol       Date:  2019-04-09       Impact factor: 4.076

6.  Ferret: a sentence-based literature scanning system.

Authors:  Padmini Srinivasan; Xiao-Ning Zhang; Roxane Bouten; Caren Chang
Journal:  BMC Bioinformatics       Date:  2015-06-20       Impact factor: 3.169

Review 7.  Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants.

Authors:  Xudong Shang; Ying Cao; Ligeng Ma
Journal:  Int J Mol Sci       Date:  2017-02-20       Impact factor: 5.923

8.  Quantitative Proteomics Reveals a Role for SERINE/ARGININE-Rich 45 in Regulating RNA Metabolism and Modulating Transcriptional Suppression via the ASAP Complex in Arabidopsis thaliana.

Authors:  Samuel L Chen; Timothy J Rooney; Anna R Hu; Hunter S Beard; Wesley M Garrett; Leann M Mangalath; Jordan J Powers; Bret Cooper; Xiao-Ning Zhang
Journal:  Front Plant Sci       Date:  2019-09-19       Impact factor: 5.753

Review 9.  Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process.

Authors:  Katja Meyer; Tino Koester; Dorothee Staiger
Journal:  Biomolecules       Date:  2015-07-24

10.  Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana.

Authors:  Xiao-Ning Zhang; Yifei Shi; Jordan J Powers; Nikhil B Gowda; Chong Zhang; Heba M M Ibrahim; Hannah B Ball; Samuel L Chen; Hua Lu; Stephen M Mount
Journal:  BMC Genomics       Date:  2017-10-11       Impact factor: 3.969

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