Literature DB >> 25758231

Holes in the Nuclear Membrane as an Illustration of Gaps in the Understanding of the Biology by Biologists.

Vasily Kuvichkin1.   

Abstract

At the moment, the conditions are in place to describe how to construct nuclear pores and how they work, missing only real understanding of process. The DNA-RNA-protein paradigm proposed by Crick 53 years ago (Symp Soc Exp Biol 12:138-163, 1958; Nature 227:561-563, 1970) severely hampers our understanding of nuclear pore structure and assembly because the problem lies outside paradigm. DNA in this scheme only plays the role of information storage from which information is transferred to RNA, then from RNA to proteins after which proteins perform all of the functions in the cell. Although it is known that DNA is able to build nucleosomes in vivo, many in vitro structures types of origami (Rothemund, Nature 440:297-302, 2006), the DNA is considered to be exotic as structural material for cells. The structural role of RNA is difficult to ignore, in connections with their participation in structures of ribosomes, ribonucleoproteins, and ribozymes, but imagine that DNA performs an important structural role in the cell is impossible in opinion of many authors. So, when there was a problem in explaining the origin of the nuclear pore, all efforts of biologists were directed to proteins such as nucleoporins, especially when taking into account that there are 30 nucleoporins and only one DNA. Here, I try to explain the typical mistakes of the old approach to such a complex problem as nuclear pore structure and assembly.

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Year:  2015        PMID: 25758231     DOI: 10.1007/s00232-015-9786-9

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  25 in total

1.  Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome.

Authors:  Annakaisa Elo; Anna Lyznik; Delkin O Gonzalez; Stephen D Kachman; Sally A Mackenzie
Journal:  Plant Cell       Date:  2003-07       Impact factor: 11.277

2.  On protein synthesis.

Authors:  F H CRICK
Journal:  Symp Soc Exp Biol       Date:  1958

Review 3.  The nuclear pore complex: a jack of all trades?

Authors:  Birthe Fahrenkrog; Joachim Köser; Ueli Aebi
Journal:  Trends Biochem Sci       Date:  2004-04       Impact factor: 13.807

4.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  Exon-intron circular RNAs regulate transcription in the nucleus.

Authors:  Zhaoyong Li; Chuan Huang; Chun Bao; Liang Chen; Mei Lin; Xiaolin Wang; Guolin Zhong; Bin Yu; Wanchen Hu; Limin Dai; Pengfei Zhu; Zhaoxia Chang; Qingfa Wu; Yi Zhao; Ya Jia; Ping Xu; Huijie Liu; Ge Shan
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

6.  Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes.

Authors:  Azusa Inoue; Yi Zhang
Journal:  Nat Struct Mol Biol       Date:  2014-06-08       Impact factor: 15.369

7.  Involvement of phosphatidylinositol 4,5-bisphosphate in RNA polymerase I transcription.

Authors:  Sukriye Yildirim; Enrique Castano; Margarita Sobol; Vlada V Philimonenko; Rastislav Dzijak; Tomás Venit; Pavel Hozák
Journal:  J Cell Sci       Date:  2013-04-16       Impact factor: 5.285

8.  DNA-induced aggregation and fusion of phosphatidylcholine liposomes in the presence of multivalent cations observed by the cryo-TEM technique.

Authors:  Vasily V Kuvichkin; Radostin S Danev; Hideki Shigematsu; Kuniaki Nagayama
Journal:  J Membr Biol       Date:  2009-01-03       Impact factor: 1.843

9.  Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor.

Authors:  Jeffrey A DeGrasse; Kelly N DuBois; Damien Devos; T Nicolai Siegel; Andrej Sali; Mark C Field; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2009-06-13       Impact factor: 5.911

10.  Continued colonization of the human genome by mitochondrial DNA.

Authors:  Miria Ricchetti; Fredj Tekaia; Bernard Dujon
Journal:  PLoS Biol       Date:  2004-09-07       Impact factor: 8.029

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