Literature DB >> 25757784

Software-assisted stacking of gene modules using GoldenBraid 2.0 DNA-assembly framework.

Marta Vazquez-Vilar1, Alejandro Sarrion-Perdigones, Peio Ziarsolo, Jose Blanca, Antonio Granell, Diego Orzaez.   

Abstract

GoldenBraid (GB) is a modular DNA assembly technology for plant multigene engineering based on type IIS restriction enzymes. GB speeds up the assembly of transcriptional units from standard genetic parts and facilitates the stacking of several genes within the same T-DNA in few days. GBcloning is software-assisted with a set of online tools. The GBDomesticator tool assists in the adaptation of DNA parts to the GBstandard. The combination of GB-adapted parts to build new transcriptional units is assisted by the GB TU Assembler tool. Finally, the assembly of multigene modules is simulated by the GB Binary Assembler. All the software tools are available at www.gbcloning.org . Here, we describe in detail the assembly methodology to create a multigene construct with three transcriptional units for polyphenol metabolic engineering in plants.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25757784     DOI: 10.1007/978-1-4939-2444-8_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  GB3.0: a platform for plant bio-design that connects functional DNA elements with associated biological data.

Authors:  Marta Vazquez-Vilar; Alfredo Quijano-Rubio; Asun Fernandez-Del-Carmen; Alejandro Sarrion-Perdigones; Rocio Ochoa-Fernandez; Peio Ziarsolo; José Blanca; Antonio Granell; Diego Orzaez
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

2.  Golden Mutagenesis: An efficient multi-site-saturation mutagenesis approach by Golden Gate cloning with automated primer design.

Authors:  Pascal Püllmann; Chris Ulpinnis; Sylvestre Marillonnet; Ramona Gruetzner; Steffen Neumann; Martin J Weissenborn
Journal:  Sci Rep       Date:  2019-07-29       Impact factor: 4.379

3.  A modular toolbox for gRNA-Cas9 genome engineering in plants based on the GoldenBraid standard.

Authors:  Marta Vazquez-Vilar; Joan Miquel Bernabé-Orts; Asun Fernandez-Del-Carmen; Pello Ziarsolo; Jose Blanca; Antonio Granell; Diego Orzaez
Journal:  Plant Methods       Date:  2016-02-01       Impact factor: 4.993

4.  Identification of Transgene-Free CRISPR-Edited Plants of Rice, Tomato, and Arabidopsis by Monitoring DsRED Fluorescence in Dry Seeds.

Authors:  Norma Aliaga-Franco; Cunjin Zhang; Silvia Presa; Anjil K Srivastava; Antonio Granell; David Alabadí; Ari Sadanandom; Miguel A Blázquez; Eugenio G Minguet
Journal:  Front Plant Sci       Date:  2019-09-18       Impact factor: 5.753

5.  A memory switch for plant synthetic biology based on the phage ϕC31 integration system.

Authors:  Joan Miquel Bernabé-Orts; Alfredo Quijano-Rubio; Marta Vazquez-Vilar; Javier Mancheño-Bonillo; Victor Moles-Casas; Sara Selma; Silvia Gianoglio; Antonio Granell; Diego Orzaez
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.