Literature DB >> 25757501

Splicing defects caused by exonic mutations in PKD1 as a new mechanism of pathogenesis in autosomal dominant polycystic kidney disease.

Felix Claverie-Martin1, Francisco J Gonzalez-Paredes, Elena Ramos-Trujillo.   

Abstract

The correct splicing of precursor-mRNA depends on the actual splice sites plus exonic and intronic regulatory elements recognized by the splicing machinery. Surprisingly, an increasing number of examples reveal that exonic mutations disrupt the binding of splicing factors to these sequences or generate new splice sites or regulatory elements, causing disease. This contradicts the general assumption that missense mutations disrupt protein function and that synonymous mutations are merely polymorphisms. Autosomal dominant polycystic kidney disease (ADPKD) is a common inherited disorder caused mainly by mutations in the PKD1 gene. Recently, we analyzed a substantial number of PKD1 missense or synonymous mutations to further characterize their consequences on pre-mRNA splicing. Our results showed that one missense and 2 synonymous mutations induce significant defects in pre-mRNA splicing. Thus, it appears that aberrant splicing as a result of exonic mutations is a previously unrecognized cause of ADPKD.

Entities:  

Keywords:  ADPKD; ESE; ESS; ISE; ISS; NMD; PKD1; RT-PCR; SR proteins; SRE; autosomal dominant polycystic kidney disease; disease-causing variant; exonic mutations; exonic splicing enhancer; exonic splicing silencer; intronic splicing enhancer; intronic splicing silencer; mRNA analysis; minigene assay; missense mutation; nonsense-mediated mRNA decay; pre-mRNA splicing; reverse-transcribed polymerase chain reaction; serine/arginine-rich proteins; splice site mutation; splicing regulatory element; synonymous mutation

Mesh:

Substances:

Year:  2015        PMID: 25757501      PMCID: PMC4615196          DOI: 10.1080/15476286.2015.1014291

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  54 in total

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2.  Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers.

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

Review 3.  Silencers regulate both constitutive and alternative splicing events in mammals.

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Journal:  Cell Mol Life Sci       Date:  2005-07       Impact factor: 9.261

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Journal:  J Comput Biol       Date:  1997       Impact factor: 1.479

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Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

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Authors:  Zefeng Wang; Michael E Rolish; Gene Yeo; Vivian Tung; Matthew Mawson; Christopher B Burge
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

7.  Lowering of Pkd1 expression is sufficient to cause polycystic kidney disease.

Authors:  Irma S Lantinga-van Leeuwen; Johannes G Dauwerse; Hans J Baelde; Wouter N Leonhard; Annemieke van de Wal; Christopher J Ward; Sjef Verbeek; Marco C Deruiter; Martijn H Breuning; Emile de Heer; Dorien J M Peters
Journal:  Hum Mol Genet       Date:  2004-10-20       Impact factor: 6.150

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Journal:  Genes Dev       Date:  1998-07-01       Impact factor: 11.361

9.  Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution.

Authors:  Franco Pagani; Michela Raponi; Francisco E Baralle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-19       Impact factor: 11.205

Review 10.  Genomic variants in exons and introns: identifying the splicing spoilers.

Authors:  Franco Pagani; Francisco E Baralle
Journal:  Nat Rev Genet       Date:  2004-05       Impact factor: 53.242

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  9 in total

1.  Somatic Mutations in Renal Cyst Epithelium in Autosomal Dominant Polycystic Kidney Disease.

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2.  Functional analysis by minigene assay of putative splicing variants found in Bardet-Biedl syndrome patients.

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3.  Splicing Analysis of Exonic OCRL Mutations Causing Lowe Syndrome or Dent-2 Disease.

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Journal:  Genes (Basel)       Date:  2018-01-04       Impact factor: 4.096

4.  Molecular and functional characterization of the BMPR2 gene in Pulmonary Arterial Hypertension.

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Journal:  Sci Rep       Date:  2017-05-15       Impact factor: 4.379

5.  A Comprehensive Analysis and Splicing Characterization of Naturally Occurring Synonymous Variants in the ATP7B Gene.

Authors:  Xiaoying Zhou; Wei Zhou; Chunli Wang; Lan Wang; Yu Jin; Zhanjun Jia; Zhifeng Liu; Bixia Zheng
Journal:  Front Genet       Date:  2021-02-25       Impact factor: 4.599

6.  Twelve exonic variants in the SLC12A1 and CLCNKB genes alter RNA splicing in a minigene assay.

Authors:  Qing Xin; Qihua Liu; Zhiying Liu; Xiaomeng Shi; Xuyan Liu; Ruixiao Zhang; Yefeng Hong; Xiangzhong Zhao; Leping Shao
Journal:  Front Genet       Date:  2022-08-25       Impact factor: 4.772

7.  A discarded synonymous variant in NPHP3 explains nephronophthisis and congenital hepatic fibrosis in several families.

Authors:  Eric Olinger; Intisar Al Alawi; Mohammed S Al Riyami; Isa Al Salmi; Elisa Molinari; Eissa Ali Faqeih; Mohamed H Al-Hamed; Miguel Barroso-Gil; Laura Powell; Abdulrahman A Al-Hussaini; Khawla A Rahim; Naif A M Almontashiri; Colin Miles; Shirlee Shril; Friedhelm Hildebrandt; Genomics England Research Consortium; Ian J Wilson; John A Sayer
Journal:  Hum Mutat       Date:  2021-07-26       Impact factor: 4.700

8.  Human urine-derived renal epithelial cells provide insights into kidney-specific alternate splicing variants.

Authors:  Elisa Molinari; Eva Decker; Holly Mabillard; James Tellez; Shalabh Srivastava; Shreya Raman; Katrina Wood; Caroline Kempf; Sumaya Alkanderi; Simon A Ramsbottom; Colin G Miles; Colin A Johnson; Friedhelm Hildebrandt; Carsten Bergmann; John A Sayer
Journal:  Eur J Hum Genet       Date:  2018-07-12       Impact factor: 4.246

9.  Use of patient derived urine renal epithelial cells to confirm pathogenicity of PKHD1 alleles.

Authors:  Elisa Molinari; Shalabh Srivastava; Rebecca M Dewhurst; John A Sayer
Journal:  BMC Nephrol       Date:  2020-10-15       Impact factor: 2.388

  9 in total

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