Literature DB >> 25753716

Glyco3D: a portal for structural glycosciences.

Serge Pérez1, Anita Sarkar, Alain Rivet, Christelle Breton, Anne Imberty.   

Abstract

The present work describes, in a detailed way, a family of databases covering the three-dimensional features of monosaccharides, disaccharides, oligosaccharides, polysaccharides, glycosyltransferases, lectins, monoclonal antibodies against carbohydrates, and glycosaminoglycan-binding proteins. These databases have been developed with non-proprietary software, and they are open freely to the scientific community. They are accessible through the common portal called "Glyco3D" http://www.glyco3d.cermav.cnrs.fr. The databases are accompanied by a user-friendly graphical user interface (GUI) which offers several search options. All three-dimensional structures are available for visual consultations (with basic measurements possibilities) and can be downloaded in commonly used formats for further uses.

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Year:  2015        PMID: 25753716     DOI: 10.1007/978-1-4939-2343-4_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

1.  Structural studies on a non-toxic homologue of type II RIPs from bitter gourd: Molecular basis of non-toxicity, conformational selection and glycan structure.

Authors:  Thyageshwar Chandran; Alok Sharma; M Vijayan
Journal:  J Biosci       Date:  2015-12       Impact factor: 1.826

2.  Combining 3D structure with glycan array data provides insight into the origin of glycan specificity.

Authors:  Oliver C Grant; Matthew B Tessier; Lawrence Meche; Lara K Mahal; Bethany L Foley; Robert J Woods
Journal:  Glycobiology       Date:  2016-02-23       Impact factor: 4.313

Review 3.  Glycosaminoglycanomics: where we are.

Authors:  Sylvie Ricard-Blum; Frédérique Lisacek
Journal:  Glycoconj J       Date:  2016-11-30       Impact factor: 2.916

4.  Crystallization and biochemical characterization of an archaeal lectin from Methanococcus voltae A3.

Authors:  N Sivaji; K V Abhinav; M Vijayan
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-04-28       Impact factor: 1.056

5.  Updates to the Symbol Nomenclature for Glycans guidelines.

Authors:  Sriram Neelamegham; Kiyoko Aoki-Kinoshita; Evan Bolton; Martin Frank; Frederique Lisacek; Thomas Lütteke; Noel O'Boyle; Nicolle H Packer; Pamela Stanley; Philip Toukach; Ajit Varki; Robert J Woods
Journal:  Glycobiology       Date:  2019-08-20       Impact factor: 4.313

Review 6.  Proteoglycans: Potential Agents in Mammographic Density and the Associated Breast Cancer Risk.

Authors:  Michael S Shawky; Carmela Ricciardelli; Megan Lord; John Whitelock; Vito Ferro; Kara Britt; Erik W Thompson
Journal:  J Mammary Gland Biol Neoplasia       Date:  2015-12       Impact factor: 2.673

7.  Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank.

Authors:  Sang-Jun Park; Jumin Lee; Dhilon S Patel; Hongjing Ma; Hui Sun Lee; Sunhwan Jo; Wonpil Im
Journal:  Bioinformatics       Date:  2017-10-01       Impact factor: 6.937

Review 8.  Decoding glycans: deciphering the sugary secrets to be coherent on the implication.

Authors:  Shreya Sharma; Shashank Shekhar; Bhasha Sharma; Purnima Jain
Journal:  RSC Adv       Date:  2020-09-15       Impact factor: 4.036

9.  GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases.

Authors:  Rahil Taujale; Saber Soleymani; Amitabh Priyadarshi; Aarya Venkat; Wayland Yeung; Krzysztof J Kochut; Natarajan Kannan
Journal:  Glycobiology       Date:  2021-12-18       Impact factor: 5.954

Review 10.  Emerging glycobiology tools: A renaissance in accessibility.

Authors:  Douglas M Oswald; Brian A Cobb
Journal:  Cell Immunol       Date:  2018-04-25       Impact factor: 4.178

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