Literature DB >> 25753710

JCGGDB: Japan Consortium for Glycobiology and Glycotechnology Database.

Masako Maeda1, Noriaki Fujita, Yoshinori Suzuki, Hiromichi Sawaki, Toshihide Shikanai, Hisashi Narimatsu.   

Abstract

The biological significance of glycans has been widely studied and reported in the past. However, most achievements of our predecessors are not readily available in existing databases. JCGGDB is a meta-database involving 15 original databases in AIST and 5 cooperative databases in alliance with JCGG: Japan Consortium for Glycobiology and Glycotechnology. It centers on a glycan structure database and accumulates information such as glycan preferences of lectins, glycosylation sites in proteins, and genes related to glycan syntheses from glycoscience and related fields. This chapter illustrates how to use three major search interfaces (Keyword Search, Structure Search, and GlycoChem Explorer) available in JCGGDB to search across multiple databases.

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Year:  2015        PMID: 25753710     DOI: 10.1007/978-1-4939-2343-4_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

1.  Updates to the Symbol Nomenclature for Glycans guidelines.

Authors:  Sriram Neelamegham; Kiyoko Aoki-Kinoshita; Evan Bolton; Martin Frank; Frederique Lisacek; Thomas Lütteke; Noel O'Boyle; Nicolle H Packer; Pamela Stanley; Philip Toukach; Ajit Varki; Robert J Woods
Journal:  Glycobiology       Date:  2019-08-20       Impact factor: 4.313

2.  Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins.

Authors:  Ian Walsh; Sophie Zhao; Katherine Wongtrakul-Kish; Matthew Choo; Shi Jie Tay; Christopher H Taron; Pauline M Rudd; Terry Nguyen-Khuong
Journal:  Methods Mol Biol       Date:  2022

Review 3.  The Glycoscience of Immunity.

Authors:  Julie Y Zhou; Douglas M Oswald; Kelsey D Oliva; Lori S C Kreisman; Brian A Cobb
Journal:  Trends Immunol       Date:  2018-05-11       Impact factor: 16.687

4.  Development and application of an algorithm to compute weighted multiple glycan alignments.

Authors:  Masae Hosoda; Yukie Akune; Kiyoko F Aoki-Kinoshita
Journal:  Bioinformatics       Date:  2017-05-01       Impact factor: 6.937

Review 5.  Annotation of Peptide Structures Using SMILES and Other Chemical Codes-Practical Solutions.

Authors:  Piotr Minkiewicz; Anna Iwaniak; Małgorzata Darewicz
Journal:  Molecules       Date:  2017-11-27       Impact factor: 4.411

Review 6.  Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.

Authors:  Jean-Philippe F Gourdine; Matthew H Brush; Nicole A Vasilevsky; Kent Shefchek; Sebastian Köhler; Nicolas Matentzoglu; Monica C Munoz-Torres; Julie A McMurry; Xingmin Aaron Zhang; Peter N Robinson; Melissa A Haendel
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

Review 7.  Emerging glycobiology tools: A renaissance in accessibility.

Authors:  Douglas M Oswald; Brian A Cobb
Journal:  Cell Immunol       Date:  2018-04-25       Impact factor: 4.178

8.  Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts.

Authors:  Philip V Toukach; Ksenia S Egorova
Journal:  Nucleic Acids Res       Date:  2015-08-18       Impact factor: 16.971

Review 9.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

Review 10.  Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics.

Authors:  Xing Li; Zhijue Xu; Xiaokun Hong; Yan Zhang; Xia Zou
Journal:  Int J Mol Sci       Date:  2020-09-14       Impact factor: 5.923

  10 in total

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