Literature DB >> 25750022

The effect of ligands on the thermal stability of sulfotransferases: a molecular dynamics simulation study.

Pu-pu Zhang1, Li Zhao, Shi-yang Long, Pu Tian.   

Abstract

Human cytosolic sulfotransferases (hSULTs) are important phase II metabolic enzymes. They catalyze transfer of the sulfuryl-group (-SO3) from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to the hydroxyl or primary amine moieties of a large number of endogenous and xenobiotic substrates. Broad selectivity and specificity of binding and activity within the sulfortransferases family could be detected by thermal denaturation assays, which have been made more and more suitable for high throughput screening based on recent technical advances. Here molecular dynamics simulations were used to explore the effect of the cofactor (PAPS) and substrate (LCA) on the thermal stability of the enzyme. It was found that the apo-enzyme unfolded fastest upon heating. The holo-enzyme with bound substrate LCA unfolded slowest. This thermo-denaturation order is consistent with that observed in experiments. Further it was found that the cofactor and substrate will pronouncedly increase the thermal stability of the active pocket regions that interact directly with the ligands. In addition, cofactor and substrate show noticeable synergy effect on the thermal stability of the enzyme.

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Year:  2015        PMID: 25750022     DOI: 10.1007/s00894-015-2625-1

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  31 in total

1.  Increasing temperature accelerates protein unfolding without changing the pathway of unfolding.

Authors:  Ryan Day; Brian J Bennion; Sihyun Ham; Valerie Daggett
Journal:  J Mol Biol       Date:  2002-09-06       Impact factor: 5.469

Review 2.  Sulfotransferases: structure, mechanism, biological activity, inhibition, and synthetic utility.

Authors:  Eli Chapman; Michael D Best; Sarah R Hanson; Chi-Huey Wong
Journal:  Angew Chem Int Ed Engl       Date:  2004-07-05       Impact factor: 15.336

Review 3.  Thermal denaturation assays in chemical biology.

Authors:  Guillermo Senisterra; Irene Chau; Masoud Vedadi
Journal:  Assay Drug Dev Technol       Date:  2011-11-08       Impact factor: 1.738

Review 4.  Structure, dynamics and selectivity in the sulfotransferase family.

Authors:  Thomas S Leyh; Ian Cook; Ting Wang
Journal:  Drug Metab Rev       Date:  2013-09-11       Impact factor: 4.518

Review 5.  Structure, function and polymorphism of human cytosolic sulfotransferases.

Authors:  Julian Lindsay; Lin-Lin Wang; Yong Li; Shu-Feng Zhou
Journal:  Curr Drug Metab       Date:  2008-02       Impact factor: 3.731

6.  Analysis of oligomeric proteins during unfolding by pH and temperature.

Authors:  Pradip Bhattacharya; Tamil Ganeshan; Soumiyadeep Nandi; Alok Srivastava; Prashant Singh; Mohommad Rehan; Reshmi Rashkush; Naidu Subbarao; Andrew Lynn
Journal:  J Mol Model       Date:  2009-02-11       Impact factor: 1.810

Review 7.  The role of drug metabolizing enzymes in clearance.

Authors:  Li Di
Journal:  Expert Opin Drug Metab Toxicol       Date:  2014-01-07       Impact factor: 4.481

8.  Regulation of MCF-7 breast cancer cell growth by beta-estradiol sulfation.

Authors:  Josie L Falany; Nancy Macrina; Charles N Falany
Journal:  Breast Cancer Res Treat       Date:  2002-07       Impact factor: 4.872

Review 9.  Structure and function of sulfotransferases.

Authors:  M Negishi; L G Pedersen; E Petrotchenko; S Shevtsov; A Gorokhov; Y Kakuta; L C Pedersen
Journal:  Arch Biochem Biophys       Date:  2001-06-15       Impact factor: 4.013

10.  Structural and chemical profiling of the human cytosolic sulfotransferases.

Authors:  Abdellah Allali-Hassani; Patricia W Pan; Ludmila Dombrovski; Rafael Najmanovich; Wolfram Tempel; Aiping Dong; Peter Loppnau; Fernando Martin; Janet Thornton; Janet Thonton; Aled M Edwards; Alexey Bochkarev; Alexander N Plotnikov; Masoud Vedadi; Cheryl H Arrowsmith
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029

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  2 in total

1.  Investigating the substrate binding mechanism of sulfotransferase 2A1 based on substrate tunnel analysis: a molecular dynamics simulation study.

Authors:  Li Zhao; Pupu Zhang; Shiyang Long; Linlin Wang; Hanyong Jin; Weiwei Han; Pu Tian
Journal:  J Mol Model       Date:  2016-07-08       Impact factor: 1.810

2.  The impact of ligands on the structure and flexibility of sulfotransferases: a molecular dynamics simulation study.

Authors:  Li Zhao; Pupu Zhang; Shiyang Long; Linlin Wang; Pu Tian
Journal:  J Mol Model       Date:  2015-07-08       Impact factor: 1.810

  2 in total

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