| Literature DB >> 25742477 |
M Lund1, M Melbye2, L J Diaz1, M Duno3, J Wohlfahrt1, J Vissing4.
Abstract
BACKGROUND: Mitochondrial mutations are commonly reported in tumours, but it is unclear whether impaired mitochondrial function per se is a cause or consequence of cancer. To elucidate this, we examined the risk of cancer in a nationwide cohort of patients with mitochondrial dysfunction.Entities:
Mesh:
Substances:
Year: 2015 PMID: 25742477 PMCID: PMC4366902 DOI: 10.1038/bjc.2015.66
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Figure 1Selection of patients with mitochondrial dysfunction for study inclusion. aWe included patients with functional maternally inherited mDNA mutations, de novo mDNA mutations or nDNA mutations in genes encoding mitochondrial functions (as defined in the methods section). bIdentified through the Danish Family Relations Database, established at Statens Serum Institut, Copenhagen. We included only relatives who under the assumption of matrilineal inheritance of mDNA mutations would be expected to carry the mutation (defined in the methods section). Abbreviations: mDNA=mitochondrial DNA; nDNA=nuclear DNA.
Characteristics of a nationwide cohort of patients with mitochondrial dysfunction by mode of ascertainment
| Maternally inherited mDNA | 32 (52.5) | 112 (96.6) | 134 (100) | 278 (89.4) |
| 8 (13.1) | 0 (0) | 0 (0) | 8 (2.57) | |
| nDNA | 21 (34.4) | 4 (3.45) | 0 (0) | 25 (8.04) |
| Male | 29 (47.5) | 39 (33.6) | 69 (51.5) | 137 (44.1) |
| Female | 32 (52.5) | 77 (66.4) | 65 (48.5) | 174 (56.0) |
| Before 1950 | 12 (19.7) | 29 (25.0) | 22 (16.4) | 63 (20.3) |
| 1950–1969 | 23 (37.7) | 49 (42.2) | 21 (15.7) | 93 (29.9) |
| 1970–1989 | 13 (21.3) | 27 (23.3) | 44 (32.8) | 84 (27.0) |
| 1990–2011 | 13 (21.3) | 11 (9.48) | 47 (35.1) | 71 (22.8) |
| 1968–1972 | 0 (0) | 64 (55.2) | 45 (33.6) | 109 (35.1) |
| 1973–1982 | 0 (0) | 13 (11.2) | 22 (16.4) | 35 (11.3) |
| 1983–1992 | 0 (0) | 16 (13.8) | 28 (20.9) | 44 (14.2) |
| 1993–2002 | 19 (31.2) | 10 (8.62) | 27 (20.2) | 56 (18.0) |
| 2003–2011 | 42 (68.9) | 13 (11.2) | 12 (8.96) | 67 (21.5) |
Abbreviations: mDNA=mitochondrial DNA; nDNA=nuclear DNA.
Probands were classified as the first individual diagnosed in a family, tested relatives as relatives that had tested positive for the mutation found in the family proband and untested relatives as relatives with a direct maternal relationship identified through the family relations database (as defined in the methods section).
The majority of the cohort members who had undergone genetic testing were older at study entry, whereas the untested relatives were generally younger: median (inter quartile interval) age at study entry, probands=36.1 (18.7–50.9) years, tested relatives= 6.63 (0.0–26.5) years, untested relatives=0.0 (0.0–6.61) years. The differences reflect that time for entry into the study differed for the three groups in order to avoid survivor bias (see methods section).
Specific types of mDNA and nDNA mutations in a nationwide cohort of 311 patientsa with mitochondrial dysfunction
| A | 1 | c.659C>T +/+ | p.A220V +/+ | |
| A | 1 | c.248delT +/+ | p.Val83Glyfs*2 +/+ | |
| A | 2 | c.137A>G +/+ | p.N46S +/+ | |
| A | 1 | c.178C>T +/+ | p. R60* +/+ | |
| A | 1 | del ex 2-4 +/+ | - | |
| A | 2 | c.2827C>T +/− | p.R943C +/- | |
| A | 1 | c.752C>T/c.1399G>A | p.T251I/p.A467T | |
| A | 1 | c.[752C>T;1760C>T]/c.2591A>G | p.[T251I;p587L]/p.N864S | |
| A | 1 | c.911T>G +/+ | p.L304R +/+ | |
| A | 1 | c.2529G>C/c.2828G>A | p.W748S/p.G848S | |
| A | 2 | c.752C>T/c.1760C>T | p.T251I/p.P587L | |
| A | 1 | c.133G>A +/+ | p.G45R +/+ | |
| A | 1 | c.312del10insAT/c.901_902delTG | — | |
| A | 3 | c.1110C>A +/+ | p.F370L +/+ | |
| A | 6 | multiple mDNA deletions | — | — |
| A | 1 | m.14453G>A | — | — |
| A | 1 | m.15579A>G | — | — |
| A | 1 | m.3256C>T | — | — |
| A | 1 | m.4409T>C | — | — |
| A | 1 | m.4450G>A | — | — |
| A | 1 | m.8156dupG | — | — |
| A | 1 | m.8340G>A | — | — |
| A | 1 | m.8989G>C | — | — |
| A | 110 | m.3243A>G | — | — |
| A | 4 | m.4078A>G | — | — |
| A | 21 | m.8344A>G | — | — |
| A | 7 | m.8993T>C | — | — |
| A | 2 | m.9176T>C | — | — |
| B | 108 | m.3243A>G | — | — |
| B | 5 | m.4078A>G | — | — |
| B | 10 | m.8344A>G | — | — |
| B | 8 | m.8993T>C | — | — |
| B | 3 | m.9176T>C | — | — |
Abbreviations: mDNA=mitochondrial DNA; nDNA=nuclear DNA.
In the present table, the 311 cohort members are grouped according to four mutation subgroups and membership of Subcohort A or Subcohort B as defined in the methods section. The number of cohort members in the four categories of mutation subgroups thus sum to the total number of cohort members in the main cohort (25+8+144+134=311).
For the subcohort of untested cohort members identified through the family relations database, the indicated mDNA point mutation is the mutation of the family proband.
Standardised incidence ratios of cancer in a nationwide cohort of patients with mitochondrial dysfunction, overall and according to proband status, subgroup of mitochondrial mutation, sex and current age
| Main cohort (all mutations) | 311 | 19 | 18.0 | 1.06 | 0.68 to 1.63 |
| All genetically certain cases | 162 | 10 | 9.51 | 1.05 | 0.60 to 1.85 |
| Probands | 61 | 0 | 1.76 | — | — |
| Non-probands | 250 | 19 | 16.2 | 1.17 | 0.76 to 1.81 |
| Maternally inherited mDNA mutation | 278 | 19 | 17.4 | 1.09 | 0.71 to 1.69 |
| Register based | 134 | 8 | 6.52 | 1.23 | 0.70 to 2.17 |
| Clinic based | 144 | 11 | 10.9 | 1.01 | 0.58 to 1.76 |
| m.3243A>G mutation | 218 | 13 | 13.8 | 0.94 | 0.53 to 1.67 |
| Non-m.3243A>G mutation | 60 | 6 | 3.61 | 1.66 | 0.98 to 2.83 |
| Other mutations | 33 | 0 | 0.60 | — | — |
| | 8 | 0 | 0.13 | — | — |
| Nuclear DNA mutation | 25 | 0 | 0.47 | — | — |
| Female | 174 | 15 | 14.0 | 1.07 | 0.66 to 1.74 |
| Male | 137 | 4 | 4.03 | 0.99 | 0.39 to 2.51 |
| Current age<50 | 282 | 5 | 5.72 | 0.87 | 0.38 to 1.98 |
| Current age≥50 | 103 | 14 | 12.3 | 1.14 | 0.72 to 1.80 |
Abbreviations: CI=confidence interval; exp=expected number of primary cancers during follow-up; mDNA=mitochondrial DNA; nDNA=nuclear DNA; obs=observed number of primary cancers during follow-up; SIR=standardised incidence ratio.
P-homogeneity: proband vs non-proband (P-value not evaluated), maternally inherited mDNA mutation vs other mutations (P-value not evaluated), female vs male= 0.88 and current age less than 50 vs current age 50 or older =0.52, register-based vs clinic-based=0.60 and m.3243A>G vs non-m.3243A>G =0.19.
Genetically, certain cases denotes cohort members with a genetically confirmed diagnosis, that is, in this subanalysis, the following cohort members were excluded: (i) cohort members identified only through the Danish Family Relations Database, (ii) 12 tested cohort members from families with the m.3243A>G-mutation in whom the degree of mDNA heteroplasmy was very low, that is, below the detection limit of the assay of 1% and (iii) 3 tested cohort members from a family where the m.8344A>G mutation was detected in the proband but neither in the mother nor in the tested siblings. This proband was diagnosed at the beginning of the study period, where the assay (direct sequencing) had an estimated sensitivity of approximately 15%, that is, a low level of heteroplasmy for the tested relatives cannot be ruled out.
As asymptotic and exact confidence intervals may differ when having few cancer cases, we also estimated exact confidence intervals for mutation groups with less than 10 cancer cases: register-based (0.53 to 2.42), non-m.3243A>G mutation (0.61 to 3.61), male (0.27 to 2.54) and current age<50 (0.28 to 2.04). Use of exact confidence intervals did not change the study conclusions.
The non-m.3243A>G-group (register-based and clinic-based cohort members) consisted of the following mutations (cohort members eligible for follow-up, obs/exp): m.8344A>G (31, 4/1.99), m.4078A>G (9, 0/0.07), m.9176T>C (5, 0/0.35), m.8993T>C (15, 2/1.20).
As current age is a time-dependent variable, the same cohort member can contribute to both categories as exposed and explaining why the number of cohort members in the two categories exceeds 311.