Literature DB >> 25739389

An Integrative Breakage Model of genome architecture, reshuffling and evolution: The Integrative Breakage Model of genome evolution, a novel multidisciplinary hypothesis for the study of genome plasticity.

Marta Farré1, Terence J Robinson, Aurora Ruiz-Herrera.   

Abstract

Our understanding of genomic reorganization, the mechanics of genomic transmission to offspring during germ line formation, and how these structural changes contribute to the speciation process, and genetic disease is far from complete. Earlier attempts to understand the mechanism(s) and constraints that govern genome remodeling suffered from being too narrowly focused, and failed to provide a unified and encompassing view of how genomes are organized and regulated inside cells. Here, we propose a new multidisciplinary Integrative Breakage Model for the study of genome evolution. The analysis of the high-level structural organization of genomes (nucleome), together with the functional constrains that accompany genome reshuffling, provide insights into the origin and plasticity of genome organization that may assist with the detection and isolation of therapeutic targets for the treatment of complex human disorders.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  epigenome; evolution; genome reshuffling; nucleome; recombination; selection

Mesh:

Year:  2015        PMID: 25739389     DOI: 10.1002/bies.201400174

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  21 in total

1.  The Cyclically Seasonal Drosophila subobscura Inversion O7 Originated From Fragile Genomic Sites and Relocated Immunity and Metabolic Genes.

Authors:  Charikleia Karageorgiou; Rosa Tarrío; Francisco Rodríguez-Trelles
Journal:  Front Genet       Date:  2020-10-09       Impact factor: 4.599

Review 2.  Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease.

Authors:  Janine E Deakin; Maya Kruger-Andrzejewska
Journal:  Chromosoma       Date:  2016-06-03       Impact factor: 4.316

Review 3.  Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution.

Authors:  Hannah K Long; Sara L Prescott; Joanna Wysocka
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

4.  The impact of chromosomal fusions on 3D genome folding and recombination in the germ line.

Authors:  Covadonga Vara; Andreu Paytuví-Gallart; Yasmina Cuartero; Lucía Álvarez-González; Laia Marín-Gual; Francisca Garcia; Beatriu Florit-Sabater; Laia Capilla; Rosa Ana Sanchéz-Guillén; Zaida Sarrate; Riccardo Aiese Cigliano; Walter Sanseverino; Jeremy B Searle; Jacint Ventura; Marc A Marti-Renom; François Le Dily; Aurora Ruiz-Herrera
Journal:  Nat Commun       Date:  2021-05-20       Impact factor: 14.919

5.  Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation.

Authors:  Priscila Biller; Laurent Guéguen; Carole Knibbe; Eric Tannier
Journal:  Genome Biol Evol       Date:  2016-05-22       Impact factor: 3.416

6.  Mammalian Comparative Genomics Reveals Genetic and Epigenetic Features Associated with Genome Reshuffling in Rodentia.

Authors:  Laia Capilla; Rosa Ana Sánchez-Guillén; Marta Farré; Andreu Paytuví-Gallart; Roberto Malinverni; Jacint Ventura; Denis M Larkin; Aurora Ruiz-Herrera
Journal:  Genome Biol Evol       Date:  2016-12-01       Impact factor: 3.416

7.  Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies.

Authors:  Sally Potter; Jason G Bragg; Mozes P K Blom; Janine E Deakin; Mark Kirkpatrick; Mark D B Eldridge; Craig Moritz
Journal:  Front Genet       Date:  2017-02-10       Impact factor: 4.599

Review 8.  Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

Authors:  Cibele G Sotero-Caio; Roy N Platt; Alexander Suh; David A Ray
Journal:  Genome Biol Evol       Date:  2017-01-01       Impact factor: 3.416

Review 9.  Chromosome Evolution in Marsupials.

Authors:  Janine E Deakin
Journal:  Genes (Basel)       Date:  2018-02-06       Impact factor: 4.096

10.  Sister chromatid telomere fusions, but not NHEJ-mediated inter-chromosomal telomere fusions, occur independently of DNA ligases 3 and 4.

Authors:  Kate Liddiard; Brian Ruis; Taylor Takasugi; Adam Harvey; Kevin E Ashelford; Eric A Hendrickson; Duncan M Baird
Journal:  Genome Res       Date:  2016-03-03       Impact factor: 9.043

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