Literature DB >> 25725260

Next-generation pathology--surveillance of tumor microecology.

Björn Koos1, Masood Kamali-Moghaddam1, Leonor David2, Manuel Sobrinho-Simões2, Anna Dimberg1, Mats Nilsson3, Carolina Wählby4, Ola Söderberg5.   

Abstract

A tumor is a heterogeneous population of cells that provides an environment in which every cell resides in a microenvironmental niche. Microscopic evaluation of tissue sections, based on histology and immunohistochemistry, has been a cornerstone in pathology for decades. However, the dawn of novel technologies to investigate genetic aberrations is currently adopted in routine molecular pathology. We herein describe our view on how recent developments in molecular technologies, focusing on proximity ligation assay and padlock probes, can be applied to merge the two branches of pathology, allowing molecular profiling under histologic observation. We also discuss how the use of image analysis will be pivotal to obtain information at a cellular level and to interpret holistic images of tissue sections. By understanding the cellular communications in the microecology of tumors, we will be at a better position to predict disease progression and response to therapy.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  image analysis; molecular profiling; padlock probe; pathology; proximity ligation assay

Mesh:

Year:  2015        PMID: 25725260     DOI: 10.1016/j.jmb.2015.02.017

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

1.  Closing in on life: proximity dependent methods for life sciences.

Authors:  Björn Koos; Ola Söderberg
Journal:  Oncotarget       Date:  2015-07-20

2.  Mucins MUC16 and MUC1 are major carriers of SLe(a) and SLe(x) in borderline and malignant serous ovarian tumors.

Authors:  Sara Ricardo; Lara Marcos-Silva; Cristina Valente; Ricardo Coelho; Rosa Gomes; Leonor David
Journal:  Virchows Arch       Date:  2016-03-22       Impact factor: 4.064

3.  HER-3 targeting alters the dimerization pattern of ErbB protein family members in breast carcinomas.

Authors:  Michalis V Karamouzis; Georgia Dalagiorgou; Urania Georgopoulou; Afroditi Nonni; Michalis Kontos; Athanasios G Papavassiliou
Journal:  Oncotarget       Date:  2016-02-02

Review 4.  Glycomic Approaches for the Discovery of Targets in Gastrointestinal Cancer.

Authors:  Stefan Mereiter; Meritxell Balmaña; Joana Gomes; Ana Magalhães; Celso A Reis
Journal:  Front Oncol       Date:  2016-03-09       Impact factor: 6.244

Review 5.  Let There Be Light!

Authors:  Doroteya Raykova; Björn Koos; Anna Asplund; Márton Gelléri; Ylva Ivarsson; U Helena Danielson; Ola Söderberg
Journal:  Proteomes       Date:  2016-11-29

6.  Comparative analysis of tissue reconstruction algorithms for 3D histology.

Authors:  Kimmo Kartasalo; Leena Latonen; Jorma Vihinen; Tapio Visakorpi; Matti Nykter; Pekka Ruusuvuori
Journal:  Bioinformatics       Date:  2018-09-01       Impact factor: 6.937

Review 7.  Hypoxia-Induced Epithelial-Mesenchymal Transition in Cancers: HIF-1α and Beyond.

Authors:  Shing Yau Tam; Vincent W C Wu; Helen K W Law
Journal:  Front Oncol       Date:  2020-04-08       Impact factor: 6.244

Review 8.  Proximity assays for sensitive quantification of proteins.

Authors:  Christina Greenwood; David Ruff; Sara Kirvell; Gemma Johnson; Harvinder S Dhillon; Stephen A Bustin
Journal:  Biomol Detect Quantif       Date:  2015-05-20
  8 in total

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