Literature DB >> 25723926

Towards RIP using free-electron laser SFX data.

Lorenzo Galli1, Sang Kil Son1, Thomas A White1, Robin Santra1, Henry N Chapman1, Max H Nanao2.   

Abstract

Here, it is shown that simulated native serial femtosecond crystallography (SFX) cathepsin B data can be phased by rapid ionization of sulfur atoms. Utilizing standard software adopted for radiation-damage-induced phasing (RIP), the effects on both substructure determination and phasing of the number of collected patterns and fluences are explored for experimental conditions already available at current free-electron laser facilities.

Entities:  

Keywords:  SFX; X-ray FEL; phasing; radiation damage

Mesh：

Substances：

Year:  2015        PMID： 25723926     DOI： 10.1107/S1600577514027854

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN： 0909-0495            Impact factor:   2.616


  9 in total

Review 1.  Understanding pre-mRNA splicing through crystallography.

Authors:  Sara Espinosa; Lingdi Zhang; Xueni Li; Rui Zhao
Journal:  Methods       Date:  2017-05-12       Impact factor: 3.608

2.  Serial femtosecond crystallography opens new avenues for Structural Biology.

Authors:  Jesse Coe; Petra Fromme
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

Review 3.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

4.  X-ray and UV radiation-damage-induced phasing using synchrotron serial crystallography.

Authors:  Nicolas Foos; Carolin Seuring; Robin Schubert; Anja Burkhardt; Olof Svensson; Alke Meents; Henry N Chapman; Max H Nanao
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-06       Impact factor: 7.652

5.  Towards the theoretical limitations of X-ray nanocrystallography at high intensity: the validity of the effective-form-factor description.

Authors:  Malik Muhammad Abdullah; Sang-Kil Son; Zoltan Jurek; Robin Santra
Journal:  IUCrJ       Date:  2018-09-13       Impact factor: 4.769

6.  Towards phasing using high X-ray intensity.

Authors:  Lorenzo Galli; Sang-Kil Son; Thomas R M Barends; Thomas A White; Anton Barty; Sabine Botha; Sébastien Boutet; Carl Caleman; R Bruce Doak; Max H Nanao; Karol Nass; Robert L Shoeman; Nicusor Timneanu; Robin Santra; Ilme Schlichting; Henry N Chapman
Journal:  IUCrJ       Date:  2015-09-30       Impact factor: 4.769

7.  Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction.

Authors:  Bahige G Abdallah; Nadia A Zatsepin; Shatabdi Roy-Chowdhury; Jesse Coe; Chelsie E Conrad; Katerina Dörner; Raymond G Sierra; Hilary P Stevenson; Fernanda Camacho-Alanis; Thomas D Grant; Garrett Nelson; Daniel James; Guillermo Calero; Rebekka M Wachter; John C H Spence; Uwe Weierstall; Petra Fromme; Alexandra Ros
Journal:  Struct Dyn       Date:  2015-08-19       Impact factor: 2.920

8.  Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse.

Authors:  L Galli; S-K Son; M Klinge; S Bajt; A Barty; R Bean; C Betzel; K R Beyerlein; C Caleman; R B Doak; M Duszenko; H Fleckenstein; C Gati; B Hunt; R A Kirian; M Liang; M H Nanao; K Nass; D Oberthür; L Redecke; R Shoeman; F Stellato; C H Yoon; T A White; O Yefanov; J Spence; H N Chapman
Journal:  Struct Dyn       Date:  2015-04-29       Impact factor: 2.920

9.  Efficient electronic structure calculation for molecular ionization dynamics at high x-ray intensity.

Authors:  Yajiang Hao; Ludger Inhester; Kota Hanasaki; Sang-Kil Son; Robin Santra
Journal:  Struct Dyn       Date:  2015-05-07       Impact factor: 2.920
  9 in total

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