Literature DB >> 25721271

Fungal genome sequencing: basic biology to biotechnology.

Krishna Kant Sharma1.   

Abstract

The genome sequences provide a first glimpse into the genomic basis of the biological diversity of filamentous fungi and yeast. The genome sequence of the budding yeast, Saccharomyces cerevisiae, with a small genome size, unicellular growth, and rich history of genetic and molecular analyses was a milestone of early genomics in the 1990s. The subsequent completion of fission yeast, Schizosaccharomyces pombe and genetic model, Neurospora crassa initiated a revolution in the genomics of the fungal kingdom. In due course of time, a substantial number of fungal genomes have been sequenced and publicly released, representing the widest sampling of genomes from any eukaryotic kingdom. An ambitious genome-sequencing program provides a wealth of data on metabolic diversity within the fungal kingdom, thereby enhancing research into medical science, agriculture science, ecology, bioremediation, bioenergy, and the biotechnology industry. Fungal genomics have higher potential to positively affect human health, environmental health, and the planet's stored energy. With a significant increase in sequenced fungal genomes, the known diversity of genes encoding organic acids, antibiotics, enzymes, and their pathways has increased exponentially. Currently, over a hundred fungal genome sequences are publicly available; however, no inclusive review has been published. This review is an initiative to address the significance of the fungal genome-sequencing program and provides the road map for basic and applied research.

Entities:  

Keywords:  Bioenergy; biotechnology; database; fungus; gene; genome; pathogen

Mesh:

Substances:

Year:  2015        PMID: 25721271     DOI: 10.3109/07388551.2015.1015959

Source DB:  PubMed          Journal:  Crit Rev Biotechnol        ISSN: 0738-8551            Impact factor:   8.429


  14 in total

Review 1.  Coccidioides ecology and genomics.

Authors:  Bridget M Barker; Anastasia P Litvintseva; Meritxell Riquelme; Lluvia Vargas-Gastélum
Journal:  Med Mycol       Date:  2019-02-01       Impact factor: 4.076

Review 2.  Diverse Metabolic Capacities of Fungi for Bioremediation.

Authors:  Radhika Deshmukh; Anshuman A Khardenavis; Hemant J Purohit
Journal:  Indian J Microbiol       Date:  2016-04-23       Impact factor: 2.461

3.  Schultriene and nigtetraene: two sesterterpenes characterized from pathogenetic fungi via genome mining approach.

Authors:  Lan Jiang; Huanting Yang; Xue Zhang; Xiaoying Li; Kangjie Lv; Weiyan Zhang; Guoliang Zhu; Chengwei Liu; Yongheng Wang; Tom Hsiang; Lixin Zhang; Xueting Liu
Journal:  Appl Microbiol Biotechnol       Date:  2022-08-30       Impact factor: 5.560

4.  New Insights on Cyclization Specificity of Fungal Type III Polyketide Synthase, PKSIIINc in Neurospora crassa.

Authors:  Amreesh Parvez; Samir Giri; Renu Bisht; Priti Saxena
Journal:  Indian J Microbiol       Date:  2018-05-12       Impact factor: 2.461

5.  Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.

Authors:  Ole Christian Hagestad; Lingwei Hou; Jeanette H Andersen; Espen H Hansen; Bjørn Altermark; Chun Li; Eric Kuhnert; Russell J Cox; Pedro W Crous; Joseph W Spatafora; Kathleen Lail; Mojgan Amirebrahimi; Anna Lipzen; Jasmyn Pangilinan; William Andreopoulos; Richard D Hayes; Vivian Ng; Igor V Grigoriev; Stephen A Jackson; Thomas D S Sutton; Alan D W Dobson; Teppo Rämä
Journal:  IMA Fungus       Date:  2021-08-09       Impact factor: 3.515

6.  Gel-Based Purification and Biochemical Study of Laccase Isozymes from Ganoderma sp. and Its Role in Enhanced Cotton Callogenesis.

Authors:  Amit Kumar; Deepti Singh; Krishna K Sharma; Sakshi Arora; Amarjeet K Singh; Sarvajeet S Gill; Barkha Singhal
Journal:  Front Microbiol       Date:  2017-04-20       Impact factor: 5.640

7.  Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics.

Authors:  Tao Geng; Erin L Bredeweg; Craig J Szymanski; Bingwen Liu; Scott E Baker; Galya Orr; James E Evans; Ryan T Kelly
Journal:  Sci Rep       Date:  2015-11-04       Impact factor: 4.379

8.  Mechanistic Modeling of Dose and Dose Rate Dependences of Radiation-Induced DNA Double Strand Break Rejoining Kinetics in Saccharomyces cerevisiae.

Authors:  Igor Shuryak
Journal:  PLoS One       Date:  2016-01-07       Impact factor: 3.240

9.  A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication.

Authors:  Enzo Neu; Jonathan Featherston; Jasper Rees; Thomas Debener
Journal:  PLoS One       Date:  2017-10-05       Impact factor: 3.240

10.  Patterns of Conservation and Diversification in the Fungal Polarization Network.

Authors:  Eveline T Diepeveen; Thies Gehrmann; Valérie Pourquié; Thomas Abeel; Liedewij Laan
Journal:  Genome Biol Evol       Date:  2018-07-01       Impact factor: 3.416

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