Literature DB >> 25720865

Analysis of the conformational profiles of fenamates shows route towards novel, higher accuracy, force-fields for pharmaceuticals.

Ogaga G Uzoh1, Peter T A Galek, Sarah L Price.   

Abstract

In traditional molecular mechanics force fields, intramolecular non-bonded interactions are modelled as intermolecular interactions, and the form of the torsion potential is based on the conformational profiles of small organic molecules. We investigate how a separate model for the intramolecular forces in pharmaceuticals could be more realistic by analysing the low barrier to rotation of the phenyl ring in the fenamates (substituted N-phenyl-aminobenzoic acids), that results in a wide range of observed angles in the numerous fenamate crystal structures. Although the conformational energy changes by significantly less than 10 kJ mol(-1) for a complete rotation of the phenyl ring for fenamic acid, the barrier is only small because of small correlated changes in the other bond and torsion angles. The maxima for conformations where the two aromatic rings approach coplanarity arise from steric repulsion, but the maxima when the two rings are approximately perpendicular arise from a combination of an electronic effect and intramolecular dispersion. Representing the ab initio conformational energy profiles as a cosine series alone is ineffective; however, combining a cos 2ξ term to represent the electronic barrier with an intramolecular atom-atom exp-6 term for all atom pairs separated by three or more bonds (1-4 interactions) provides a very effective representation. Thus we propose a new, physically motivated, generic analytical model of conformational energy, which could be combined with an intermolecular model to form more accurate force-fields for modelling the condensed phases of pharmaceutical-like organic molecules.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25720865     DOI: 10.1039/c4cp05525j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

Review 1.  Force field development phase II: Relaxation of physics-based criteria… or inclusion of more rigorous physics into the representation of molecular energetics.

Authors:  A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

2.  Quantum Chemical Study on Mefenamic Acid Polymorphic Forms.

Authors:  Svitlana V Shishkina; Yevhenii A Vaksler; Irina S Konovalova; Victoriya V Dyakonenko; Victoriya V Varchenko
Journal:  ACS Omega       Date:  2022-05-16

3.  Packing Preferences of Chalcones: A Model Conjugated Pharmaceutical Scaffold.

Authors:  Louise S Price; Sarah L Price
Journal:  Cryst Growth Des       Date:  2022-02-11       Impact factor: 4.010

4.  Generation of crystal structures using known crystal structures as analogues.

Authors:  Jason C Cole; Colin R Groom; Murray G Read; Ilenia Giangreco; Patrick McCabe; Anthony M Reilly; Gregory P Shields
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-07-16

5.  Can the study of self-assembly in solution lead to a good model for the nucleation pathway? The case of tolfenamic acid.

Authors:  W Du; A J Cruz-Cabeza; S Woutersen; R J Davey; Q Yin
Journal:  Chem Sci       Date:  2015-04-17       Impact factor: 9.825

Review 6.  Control and prediction of the organic solid state: a challenge to theory and experiment.

Authors:  Sarah L Price
Journal:  Proc Math Phys Eng Sci       Date:  2018-09-19       Impact factor: 2.704

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.