| Literature DB >> 25719831 |
R T Bryan1, H L Regan1, S J Pirrie1, A J Devall1, K K Cheng2, M P Zeegers3, N D James4, M A Knowles5, D G Ward1.
Abstract
BACKGROUND: Better biomarkers must be found to develop clinically useful urine tests for bladder cancer. Proteomics can be used to identify the proteins released by cancer cell lines and generate candidate markers for developing such tests.Entities:
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Year: 2015 PMID: 25719831 PMCID: PMC4366887 DOI: 10.1038/bjc.2015.21
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
The UBC cell line secretome analysis
| UROtsa | NA | 5499 | 763 | 0 | 0.40 (0.03), 0.72 (0.08) | 43.7 (1.3), 61.4 (3.7) | 1.0 |
| MGH-U3 | 1 | 10 954 | 1041 | 5 | 4.29 (0.92), 4.46 (1.19) | 90.8 (4.7), 94.7 (8.9) | 4.7 |
| R-T4 | 1 | 8145 | 1160 | 1 | 1.30 (0.36), 2.62 (0.29) | 34.0 (18.0), 22.1 (11.8) | 9.6 |
| SW-780 | 1 | 4181 | 627 | 1 | 2.81 (0.32), 4.11 (0.62) | 49.3 (4.50), 62.2 (16.7) | 5.9 |
| RT112 | 2 | 5900 | 787 | 4 | 0.66 (0.07), 1.18 (0.17) | 82.4 (3.3), 62.0 (5.6) | 1.3 |
| VM-CUB-1 | 2 | 5915 | 765 | 16 | 10.8 (2.39), 9.40 (1.18) | 227 (3.79), 151 (41.7) | 5.5 |
| 5637 | 2 | 4188 | 628 | 3 | 0.41 (0.03), 0.68 (0.04) | 102 (3.81), 72.8 (0.87) | 0.7 |
| T-24 | 3 | 7087 | 916 | 0 | 1.19 (0.32), 2.37 (0.57) | 27.1 (1.36), 29.0 (3.18) | 6.3 |
| HB-CLS-2 | 3 | 7135 | 847 | 53 | 252 (92.8), 298 (22.3) | 2720 (161), 2646 (927) | 10.3 |
Abbreviations: EGFR=epidermal growth factor receptor; NA=not applicable; % Sec=percentage of secreted EGFR; UBC=urothelial bladder cancer.
The number of unique peptides identified by liquid chromatography-tandem mass spectrometry (LC-MS/MS) in each secretome and the resulting protein identifications are shown alongside the number of EGFR peptides identified. Proteomic analysis was performed once per cell line. The concentration of EGFR (determined by ELISA on biological triplicates) in paired secretomes and cell lysates is shown as ng EGFR per mg of cellular protein (determined by bicinchoninic acid assay); left value= −PMA, right value= +PMA. The percentage of secreted EGFR (% Sec) is relative to cellular EGFR.
Figure 1The effect of PMA on UBC cell line secretomes. (A) The log2 of median fold change for proteins quantitated in ≥4 UBC cell line secretomes±PMA (each data point is for a single protein and the proteins have been sorted from largest increase to largest decrease): 39 proteins show a >2-fold increase and 6 proteins a >2-fold decrease. The cell compartment for the 39 upregulated proteins is shown in (B).
Patient data and urinary EGFR summary
| Noncancer | 60 | 45/15 | NA | 75 (66–79) | 153 (91–261) | NA | NA | 4 (7%) |
| pTa | 184 | 140/44 | 79/84/21 | 74 (65–81) | 167 (124–236) | 0.395 | 0.536 | 3 (2%) |
| pT1 | 130 | 112/18 | 2/37/91 | 75 (67–80) | 224 (151–353) | 0.0003 | 0.650 | 13 (10%) |
| pT2+ | 122 | 97/25 | 0/6/116 | 78 (68–83) | 317 (215–658) | 0.0001 | 0.766 | 33 (27%) |
Abbreviations: EGFR=epidermal growth factor receptor; ROC=receiver operating characteristic.
The total numbers of patients in each stage group and the numbers of males and females and number of patients with grade 1, 2 or 3 urothelial bladder cancer (UBC) are shown. Age and urinary EGFR for each stage group are shown as median (interquartile range (IQR)). P-values and ROC areas are provided for each stage of UBC vs noncancer controls. The number of positive cases in each group is calculated using a threshold of 630 pg EGFR per mg creatinine (mean+2 s.d. of the urinary EGFR concentrations in the noncancer group).
Figure 2Urinary EGFR in UBC patients. The left-hand panel shows urinary EGFR data for patients stratified according to stage and the right-hand panel according to grade.
Figure 3The effect of ultracentrifugation on EGFR. The histogram shows the percentage of EGFR remaining in the supernatant following ultracentrifugation. Secretome data are shown as the mean±s.d. across all 9 cell lines (±PMA) and urine data as the mean±s.d. for urine from 12 patients with UBC and elevated EGFR. The western blot shows EGFR in HB-CLS-2 cell lysate and whole (W) and ultracentrifuged (U) HB-CLS-2 conditioned media.
Figure 4The prognostic value of urinary EGFR. Kaplan–Meier curves are shown for UBC-specific survival with patients stratified according to low/high urinary EGFR (>630 pg per mg creatinine).
Cox multivariable analysis of prognostic indicators
| Grade 3 (reference grade 1 or 2) | 0.982 | 0.395 | 2.670 | 0.013 | 1.231–5.792 |
| Stage pT2+ (reference pTa or pT1) | 1.997 | 0.306 | 7.369 | <0.001 | 4.043–13.429 |
| High EGFR (reference low EGFR) | 1.062 | 0.239 | 2.891 | <0.001 | 1.809–4.620 |
Abbreviations: CI=confidence interval; EGFR=epidermal growth factor receptor; HR=hazard ratio.
Figure 5Relationship between urinary EGFR and EpCAM in UBC: the creatinine-normalised concentrations of EGFR and EpCAM in the urine of patients with MIBC.
Cox multivariable analysis of prognostic indicators including EpCAM
| Grade 3 (reference grade 1 or 2) | 1.005 | 0.394 | 2.732 | 0.011 | 1.262–5.912 |
| Stage pT2+ (reference pTa or pT1) | 1.892 | 0.301 | 6.632 | <0.001 | 3.680–11.953 |
| High EGFR (reference low EGFR) | 1.900 | 0.344 | 6.691 | <0.001 | 3.411–13.124 |
| High EpCAM (reference low EpCAM) | 0.756 | 0.298 | 2.131 | 0.011 | 1.189–3.818 |
| EGFR and EpCAM interaction (high EGFR and EpCAM) | −1.689 | 0.487 | 0.185 | 0.001 | 0.071–0.480 |
Abbreviations: CI=confidence interval; EGFR=epidermal growth factor receptor; EpCAM=epithelial cell adhesion molecule; HR=hazard ratio.