Literature DB >> 25719824

dSysMap: exploring the edgetic role of disease mutations.

Roberto Mosca1, Jofre Tenorio-Laranga1, Roger Olivella1, Victor Alcalde1, Arnaud Céol2, Montserrat Soler-López1, Patrick Aloy3.   

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Year:  2015        PMID： 25719824     DOI： 10.1038/nmeth.3289

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Interactome3D: adding structural details to protein networks.

Authors:  Roberto Mosca; Arnaud Céol; Patrick Aloy
Journal:  Nat Methods       Date:  2012-12-16       Impact factor: 28.547

2.  Three-dimensional reconstruction of protein networks provides insight into human genetic disease.

Authors:  Xiujuan Wang; Xiaomu Wei; Bram Thijssen; Jishnu Das; Steven M Lipkin; Haiyuan Yu
Journal:  Nat Biotechnol       Date:  2012-01-15       Impact factor: 54.908

Review 3.  Edgotype: a fundamental link between genotype and phenotype.

Authors:  Nidhi Sahni; Song Yi; Quan Zhong; Noor Jailkhani; Benoit Charloteaux; Michael E Cusick; Marc Vidal
Journal:  Curr Opin Genet Dev       Date:  2013-11-26       Impact factor: 5.578

4.  Edgetic perturbation models of human inherited disorders.

Authors:  Quan Zhong; Nicolas Simonis; Qian-Ru Li; Benoit Charloteaux; Fabien Heuze; Niels Klitgord; Stanley Tam; Haiyuan Yu; Kavitha Venkatesan; Danny Mou; Venus Swearingen; Muhammed A Yildirim; Han Yan; Amélie Dricot; David Szeto; Chenwei Lin; Tong Hao; Changyu Fan; Stuart Milstein; Denis Dupuy; Robert Brasseur; David E Hill; Michael E Cusick; Marc Vidal
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

5.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962
  5 in total
  47 in total

1.  Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Authors:  Eduard Porta-Pardo; Atanas Kamburov; David Tamborero; Tirso Pons; Daniela Grases; Alfonso Valencia; Nuria Lopez-Bigas; Gad Getz; Adam Godzik
Journal:  Nat Methods       Date:  2017-07-17       Impact factor: 28.547

2.  Mutation Drivers of Immunological Responses to Cancer.

Authors:  Eduard Porta-Pardo; Adam Godzik
Journal:  Cancer Immunol Res       Date:  2016-07-11       Impact factor: 11.151

Review 3.  Functional variomics and network perturbation: connecting genotype to phenotype in cancer.

Authors:  Song Yi; Shengda Lin; Yongsheng Li; Wei Zhao; Gordon B Mills; Nidhi Sahni
Journal:  Nat Rev Genet       Date:  2017-03-27       Impact factor: 53.242

4.  GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets.

Authors:  Mikhail G Dozmorov; Lukas R Cara; Cory B Giles; Jonathan D Wren
Journal:  Bioinformatics       Date:  2016-04-01       Impact factor: 6.937

5.  Comprehensive assessment of cancer missense mutation clustering in protein structures.

Authors:  Atanas Kamburov; Michael S Lawrence; Paz Polak; Ignaty Leshchiner; Kasper Lage; Todd R Golub; Eric S Lander; Gad Getz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

6.  Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites.

Authors:  Donghyo Kim; Seong Kyu Han; Kwanghwan Lee; Inhae Kim; JungHo Kong; Sanguk Kim
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

Review 7.  Gain-of-Function Mutations: An Emerging Advantage for Cancer Biology.

Authors:  Yongsheng Li; Yunpeng Zhang; Xia Li; Song Yi; Juan Xu
Journal:  Trends Biochem Sci       Date:  2019-04-29       Impact factor: 13.807

8.  StructMAn: annotation of single-nucleotide polymorphisms in the structural context.

Authors:  Alexander Gress; Vasily Ramensky; Joachim Büch; Andreas Keller; Olga V Kalinina
Journal:  Nucleic Acids Res       Date:  2016-05-05       Impact factor: 16.971

9.  Protein interaction perturbation profiling at amino-acid resolution.

Authors:  Jonathan Woodsmith; Luise Apelt; Victoria Casado-Medrano; Ziya Özkan; Bernd Timmermann; Ulrich Stelzl
Journal:  Nat Methods       Date:  2017-10-16       Impact factor: 28.547

Review 10.  The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine.

Authors:  Kivilcim Ozturk; Michelle Dow; Daniel E Carlin; Rafael Bejar; Hannah Carter
Journal:  J Mol Biol       Date:  2018-06-15       Impact factor: 5.469
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