| Literature DB >> 25715779 |
Masanao Matayoshi1, Takashi Kitano, Tetsu Sasaki, Masaji Nakamura.
Abstract
A total of 349 Salmonella enterica subspecies enterica serovar Choleraesuis (S. Choleraesuis) strains, which were isolated between 2008 and 2012 from 349 pigs at two slaughterhouses in Okinawa Prefecture, Japan, were investigated for antimicrobial susceptibility and the presence of antimicrobial resistance genes. All isolates were resistant to at least four antimicrobial agents. The antimicrobial agents for which isolates showed a high incidence of resistance were as follows: ampicillin (100%) and streptomycin (100%), followed by gentamicin (99.7%), oxytetracycline (99.7%), sulfamethoxazole/trimethoprim (99.4%), nalidixic acid (40.1%) and oxolinic acid (40.1%). All isolates were sensitive to cefuroxime, ceftiofur, colistin, fosfomycin, enrofloxacin, orbifloxacin and danofloxacin. The predominant resistance phenotypes and genotypes were: resistance to ampicillin, streptomycin, gentamicin, oxytetracycline and sulfamethoxazole/trimethoprim (58.5%, 204/349) and blaTEM-strA-strB-aadA1-aadA2-aacC2-tet (B)-sul1-sul2-dhfrXII-dhfrXIII (36.1%, 126/349). The quinolone resistance-determining regions (QRDRs) of gyrA, gyrB, parC and parE of the quinolone-resistant isolates (n=12) showed amino acid substitutions of Ser-83→Phe or Asp-87→Tyr in GyrA and Ser-107→Ala in ParC. To our knowledge, this is the first report on the molecular characterization of antimicrobial resistance among S. Choleraesuis strains in Japan.Entities:
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Year: 2015 PMID: 25715779 PMCID: PMC4488408 DOI: 10.1292/jvms.14-0683
Source DB: PubMed Journal: J Vet Med Sci ISSN: 0916-7250 Impact factor: 1.267
Trends in antimicrobial resistance genes in Salmonella Choleraesuis isolates (n=349)
| Resistance phenotype | Resistance genes | No. (%) of resistant isolates by isolation period | |||||
|---|---|---|---|---|---|---|---|
| 2008 | 2009 | 2010 | 2011 | 2012 | Total | ||
| Ampicillin | 128 (100) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 349 (100) | |
| (349) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | |
| Streptomycin | 126 (98.4) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (99.4) | |
| (349) | 126 (98.4) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (99.4) | |
| 71 (55.5) | 16 (61.5) | 78 (83.9) | 37 (43.0) | 7 (43.8) | 209 (59.9) | ||
| 127 (99.2) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 348 (99.7) | ||
| Kanamycin | 0 (0) | 1 (100) | 0 (0) | 0 (0) | 0 (0) | 1 (100) | |
| (1) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | |
| Gentamicin | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | |
| (348) | 127 (99.2) | 25 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (99.4) | |
| Tetracycline | 0 (0) | 1 (3.8) | 0 (0) | 0 (0) | 0 (0) | 1 (0.3) | |
| (348) | 127 (100) | 25 (96.2) | 93 (100) | 85 (98.8) | 16 (100) | 346 (99.4) | |
| 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | ||
| Phenicols | 0 (0) | 1 (100) | 0 (0) | 0 (0) | 0 (0) | 1 (100) | |
| (1) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | |
| 124 (98.4) | 26 (100) | 90 (96.8) | 85 (98.8) | 16 (100) | 341 (98.3) | ||
| 126 (100) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (100) | ||
| Sulfonamides/trimethoprim | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | |
| (347) | 126 (100) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (100) | |
| 126 (100) | 26 (100) | 93 (100) | 86 (100) | 16 (100) | 347 (100) | ||
PCR primers used for antimicrobial resistance genes and sequencing of QRDR
| Antimicrobial family | Resistance gene | Forward PCR primer sequence (5´-3´) | Reverse PCR primer sequence (5´-3´) | Reference |
|---|---|---|---|---|
| Beta-lactams | GAGTATTCAACATTTTCGT | ACCAATGCTTAATCAGTGA | [ | |
| TCGCCTGTGTATTATCTCCC | CGCAGATAAATCACCACAATG | [ | ||
| TCAACTTTCAAGATCGCA | GTGTGTTTAGAATGGTGA | [ | ||
| GCAAGTAGGGCAGGCAATCA | GAGCTAGATAGATGCTCACAA | [ | ||
| GACAGCCTCTTTCTCCACA | TGGAACGAAGGCTACGTA | [ | ||
| Aminoglycosides | TGGCAGGAGGAACAGGAGG | AGGTCGATCAGACCCGTGC | [ | |
| GCGGACACCTTTTCCAGCCT | TCCGCCATCTGTGCAATGCG | [ | ||
| TATCAGAGGTAGTTGGCGTCAT | GTTCCATAGCGTTAAGGTTTCATT | [ | ||
| TGTTGGTTACTGTGGCCGTA | GATCTCGCCTTTCACAAAGC | [ | ||
| GAGCGAAATCTGCCGCTCTGG | CTGTTACAACGGACTGGCCGC | [ | ||
| ATGGGCTCGCGATAATGTC | CTCACCGAGGCAGTTCCAT | [ | ||
| GAACAAGATGGATTGCACGC | GCTCTTCAGCAATATCACGG | [ | ||
| GTGTGCTGCTGGTCCACAGC | AGTTGACCCAGGGCTGTCGC | [ | ||
| CGGAAGGCAATAACGGAG | TCGAACAGGTAGCACTGAG | [ | ||
| Tetracycline | GTGAAACCCAACATACCCC | GAAGGCAAGCAGGATGTAG | [ | |
| CCTTATCATGCCAGTCTTGC | ACTGCCGTTTTTTCGCC | [ | ||
| ACTTGGAGCCACTATCGAC | CTACAATCCATGCCAACCC | [ | ||
| TGGGCAGATGGTCAGATAAG | CAGCACACCCTGTAGTTTTC | [ | ||
| TTAATGGCAACAGCCAGC | TCCATACCCATCCATTCCAC | [ | ||
| CCGGTCTTATGGGTGCTCTA | CCAGAAGAACGAAGCCAGTC | [ | ||
| Phenicols | CGCCGTCATTCCTCACCTTC | GATCACGGGCCACGCTGTGTC | [ | |
| CCGCCACGGTGTTGTTGTTATC | CACCTTGCCTGCCCATCATTAG | [ | ||
| AGTTGCTCAATGTACCTATAACC | TTGTAATTCATTAAGCATTCTGCC | [ | ||
| Sulfonamides/ trimethoprim | TTCGGCATTCTGAATCTCAC | ATGATCTAACCCTCGGTCTC | [ | |
| CGGCATCGTCAACATAACC | GTGTGCGGATGAAGTCAG | [ | ||
| AAGAATGGAGTTATCGGGAATG | GGGTAAAAACTGGCCTAAAATTG | [ | ||
| CTGCAAAAGCGAAAAACGG | AGCAATAGTTAATGTTTGAGCTAAAG | [ | ||
| GGTAATGGCCCTGATATCCC | TGTAGATTTGACCGCCACC | [ | ||
| TCTAAACATGATTGTCGCTGTC | TTGTTTTCAGTAATGGTCGGG | [ | ||
| ACCAGAGCATTCGGTAATCA | TTGGATCACCTACCCATAGA | [ | ||
| AAATTCCGGGTGAGCAGAAG | CCCGTTGACGGAATGGTTAG | [ | ||
| CAGGTGAGCAGAAGATTTTT | CCTCAAAGGTTTGATGTACC | [ | ||
| QRDR | GCTGAAGAGCTCCTATCTGG | GGTCGGCATGACGTCCGG | [ | |
| GCGCGCTCGATTTAGCCG | TGATAGCGCAGCTTGTCCG | [ | ||
| GTACGTGATCATGGATCGTG | TTCCTGCATGGTGCCGTCG | [ | ||
| GCGATCGCGAATATCAGGCG | CAGTTGTTCCAGTACGCCC | [ |
Antimicrobial resistance phenotypes and genotypes of Salmonella Choleraesuis from slaughter pigs
| Resistance phenotype | No. of isolates (%) | Resistance genotype |
|---|---|---|
| ABPC·SM·KM·OTC·CP·ST | 1 (0.3) | |
| ABPC·SM·GM·OTC·ST·NA/OA | 74 (21.2) | |
| 62 (17.8) | ||
| 3 (0.9) | ||
| 1 (0.3) | ||
| 1 (0.3) | ||
| ABPC·SM·GM·OTC·ST | 126 (36.1) | |
| 73 (20.9) | ||
| 1 (0.3) | ||
| 2 (0.6) | ||
| 1 (0.3) | ||
| 1 (0.3) | ||
| ABPC·SM·GM·OTC | 1 (0.3) | |
| 1 (0.3) | ||
| ABPC·SM·GM·ST | 1 (0.3) | |
| Total | 349 (100) | |