Kathleen E Dennis1, William M Valentine1. 1. †Department of Pathology, Microbiology and Immunology, ‡Center in Molecular Toxicology, §Vanderbilt Brain Institute, Vanderbilt University Medical Center, 1161 21st Avenue South, Nashville, Tennessee 37232-2561, United States.
Abstract
Ubiquitin activating enzyme E1 plays a pivotal role in ubiquitin based protein signaling through regulating the initiating step of the cascade. Previous studies demonstrated that E1 is inhibited by covalent modification of reactive cysteines contained within the ubiquitin-binding groove and by conditions that increase oxidative stress and deplete cellular antioxidants. In this study, we determined the relative contribution of covalent adduction and oxidative stress to E1 inhibition produced by ziram and sodium N,N-dimethyldithiocarbamate (DMDC) in HEK293 cells. Although no dithiocarbamate-derived E1 adducts were identified on E1 using shotgun LC/MS/MS for either ziram or DMDC, both dithiocarbamates significantly decreased E1 activity, with ziram demonstrating greater potency. Ziram increased intracellular levels of zinc and copper, DMDC increased intracellular levels of only copper, and both dithiocarbamates enhanced oxidative injury evidenced by elevated levels of protein carbonyls and expression of heme oxygenase-1. To assess the contribution of intracellular copper transport to E1 inhibition, coincubations were performed with the copper chelator triethylenetetramine hydrochloride (TET). TET significantly protected E1 activity for both of the dithiocarbamates and decreased the associated oxidative injury in HEK293 cells as well as prevented dithiocarbamate-mediated lipid peroxidation assayed using an ethyl aracidonate micelle system. Because TET did not completely ameliorate intracellular transport of copper or zinc for ziram, TET apparently maintained E1 activity through its ability to diminish dithiocarbamate-mediated oxidative stress. Experiments to determine the relative contribution of elevated intracellular zinc and copper were performed using a metal free incubation system and showed that increases in either metal were sufficient to inhibit E1. To evaluate the utility of the HEK293 in vitro system for screening environmental agents, a series of additional pesticides and metals was assayed, and eight agents that produced a significant decrease and five that produced a significant increase in activated E1 were identified. These studies suggest that E1 is a sensitive redox sensor that can be modulated by exposure to environmental agents and can regulate downstream cellular processes.
Ubiquitin activating enzyme E1 plays a pivotal role in ubiquitin based protein signaling through regulating the initiating step of the cascade. Previous studies demonstrated that E1 is inhibited by covalent modification of reactivecysteines contained within the ubiquitin-binding groove and by conditions that increase oxidative stress and deplete cellular antioxidants. In this study, we determined the relative contribution of covalent adduction and oxidative stress to E1 inhibition produced by ziram and sodium N,N-dimethyldithiocarbamate (DMDC) in HEK293 cells. Although no dithiocarbamate-derived E1 adducts were identified on E1 using shotgun LC/MS/MS for either ziram or DMDC, both dithiocarbamates significantly decreased E1 activity, with ziram demonstrating greater potency. Ziram increased intracellular levels of zinc and copper, DMDC increased intracellular levels of only copper, and both dithiocarbamates enhanced oxidative injury evidenced by elevated levels of protein carbonyls and expression of heme oxygenase-1. To assess the contribution of intracellular copper transport to E1 inhibition, coincubations were performed with the copper chelator triethylenetetramine hydrochloride (TET). TET significantly protected E1 activity for both of the dithiocarbamates and decreased the associated oxidative injury in HEK293 cells as well as prevented dithiocarbamate-mediated lipid peroxidation assayed using an ethyl aracidonate micelle system. Because TET did not completely ameliorate intracellular transport of copper or zinc for ziram, TET apparently maintained E1 activity through its ability to diminish dithiocarbamate-mediated oxidative stress. Experiments to determine the relative contribution of elevated intracellular zinc and copper were performed using a metal free incubation system and showed that increases in either metal were sufficient to inhibit E1. To evaluate the utility of the HEK293 in vitro system for screening environmental agents, a series of additional pesticides and metals was assayed, and eight agents that produced a significant decrease and five that produced a significant increase in activated E1 were identified. These studies suggest that E1 is a sensitive redox sensor that can be modulated by exposure to environmental agents and can regulate downstream cellular processes.
Genetic and genome
analyses demonstrate that neurodevelopmental
and neurodegenerative disorders are multifactorial in nature and include
gene–environment interactions.[1,2] These studies
define specific molecular mechanisms and cellular pathways that, when
perturbed by multiple gene variants, contribute to neuronal disease
or dysfunction. One such essential molecular pathway involves protein
ubiquitination, which regulates protein trafficking and activity within
the cell and protein degradation through the ubiquitin proteasome
system (UPS).[3−5] Protein ubiquitination is particularly important
in regulating key activities in the brain, including cellular proliferation,
synapse development, neuronal transmission, and synaptic plasticity.[5−7] Genetic mutations and gene variants of proteins in the ubiquitin
cascade have been identified as contributing to multifactorial disorders
such as Parkinson’s disease (PD), suggesting that the nervous
system is susceptible to impaired or altered function of protein ubiquitination.[7−10] One singularly important protein is ubiquitin-activating enzyme
(E1).[11,12] E1 is the apical enzyme in the enzymatic
cascade necessary for protein ubiquitination. E1 catalyzes the initial
ATP-dependent thioester formation of ubiquitin to E1 (ub-E1) required
for passing ubiquitin on to an E2 conjugase prior to final substrate
ubiquitination by either an E2 conjugase or an E3 ligase. Thus, it
stands to reason that perturbation of E1 function either through aberrant
cellular processes or effects of environmental factors may disrupt
a multitude of downstream events dependent upon protein ubiquitination
and potentially contribute to the pathogenesis of nervous system disorders.[6,7]Epidemiological studies support environmental toxin exposure
as
a risk factor for neurodevelopmental and neurodegenerative diseases.[2,13−15] One recent report suggests that exposure to certain
pesticides, including some dithiocarbamates, increases the risk for
PD and that specific genetic variants in genes associated with the
UPS can potentiate this risk significantly.[15] Furthermore, animal and cell culture models demonstrate that exposure
to environmental toxins can perturb ubiquitin-based protein processing
and can be associated with aberrant neurological outcome.[16−18] Importantly, specific deleterious effects of pesticide exposure
on activation of E1 in vitro and in vivo have been reported. For example,
cultured ventral mesencephalic neurons exposed to ziram, a dithiocarbamate
widely used as a fungicide, produced inhibition of E1, loss of tyrosine
hydroxylase positive neurons, and elevated α-synuclein levels.[19] Mice administered ziram demonstrated loss of
tyrosine hydroxylase positive neurons in the striatum and motor deficits,
suggesting that similar effects on E1 may be occurring in vivo. Thus,
E1 presents a putative molecular target through which environmental
factors can contribute to neurodevelopmental and neurodegenerative
diseases.One potential mechanism of ziram-mediated inhibition
of E1 is covalent
adduction, a previous study identified E1 as a susceptible target
for adduction through both Michael addition and SN2 mechanisms
in HEK293 cell extracts.[20] E1 was specifically
adducted on cysteine 234, a cysteine located in the first catalytic
cysteine domain (FCCH) of the ubiquitin-binding groove. Subsequent
in vivo proteomic studies of rats exposed to N,N-diethlyldithiocarbamate (DEDC) identified S-ethylaminocarbonyl adducts on brain E1 at Cys234 and Cys179 accompanied
by inhibition of E1. Furthermore, rats exposed to DEDC exhibited markers
of neurodegenerative change within the nigrostriatal system similar
to those present in PD.[21]While those
previous proteomic studies are consistent with inhibition
of E1 through electrophilic adduction, other studies report that E1
activity is dependent on the redox status of the cell, suggesting
that dithiocarbamates may also inhibit E1 through elevated oxidative
stress.[20,21] Dithiocarbamates form metal complexes that
vary in their solubility and redox activity depending upon the polarity
of the nitrogen substituents and the redox potential of the metal,
respectively.[22,23] Dithiocarbamates readily bind
copper and dithiocarbamates with nonpolar nitrogen substituents, including
DEDC and N,N-dimethyldithiocarbamate (DMDC), form
redox active copper complexes that cross cell membranes, partition
into lipid compartments, and promote oxidative injury.[23−25] This property has been demonstrated in animal models through elevations
of copper, lipid peroxidation, protein oxidative injury, and increased
apoptosis.[24−26] In the study presented here, we investigated the
relative contribution of covalent adduction and oxidative stress in
the dithiocarbamate-mediated inhibition of E1 in HEK293 cells.
Materials and Methods
Cell Culture and Treatments
HEK293 cells were obtained
from American Type Culture Collection (ATCC) bioresource (Manassas,
VA) and cultured at 37 °C in 5% CO2 in Eagle’s
minimum essential media (EMEM) (ATCC, Manassas, VA) supplemented with
10% fetal calf serum, 100 μg/mL gentamycin, and 2 mM l-glutamine (Gemini Bioproducts, Sacramento, CA) in 75 cm2 culture flasks until they were 70–80% confluent. Cells were
washed once with phosphate buffered saline (PBS), incubated at 37
°C in 1 mL of Accutase (Millipore, Temecula, CA) to detach the
cells from the flask surface, and resuspended in 10 mL of media, and
the cell concentration was determined with a Scepter 2.0 automated
cell counter (Millipore, Temecula, CA). Cells were plated at 1.0 ×
106 cells/plate in 100 mm × 20 mm cell culture plates
(ThermoScientific, Waltham, MA) and incubated as described above until
they were 70–80% confluent. Cultures were supplemented with
media as required, and fresh media was added 12 h prior to experimental
treatment. Exposure of cells to test compounds was performed as follows:
compounds were dissolved in DMSO or distilled water, depending on
solubility, and a 1/1000 dilution of each was added to EMEM supplemented
as described above. The main compounds utilized in the study were
10 μM ziram (dissolved in DMSO) (Sigma-Aldrich, St. Louis, MO),
20 μM dimethyldithiocarbamate (DMDC) (dissolved in DMSO) (Thermo-Fisher
Scientific, Waltham MA), and either 60 or 120 μM triethylenetetramine
hydrochloride (TET) (dissolved in water) (Sigma-Aldrich, St. Louis,
MO). All controls contained the equivalent amount of DMSO (0.1%) as
experimental cultures, and preliminary experiments were done to confirm
that cell viability was unaffected at this concentration. Other compounds
utilized are summarized in Table 1, including
information on acquisition of the compound. Culture plates were obtained
from the incubator, spent media was aspirated, the cells were washed
once with 5 mL of PBS, and 8 mL of fresh media containing the designated
compound or control was added to the cultures. Plates were returned
to the incubator for 6 h and then processed for sample collection.
Table 1
Compounds Tested in HEK293 Cell Culture
Assaya
category
compound
ub-E1/E1
levelsb
dimethyldithiocarbamate
10 μM ziram
0.27***
20 μM DMDC
0.25**
10 μM thiram
0.67*
thiocarbamate
10 μM molinate
2.5**
dithiocarbamates
20 μM PYDTC
0.57***
10 μM ZnDEDC
0.32**
10 μM NaDEDC
0.32**
10 μM mancozeb
ns
10 μM maneb
0.22**
10 μM Me-DETC
ns
10 μM metam
1.5**
10 μM Na-DETCSO
ns
20 μM EPTC
ns
10 μM disulfiram
ns
10 μM zineb
ns
20 μM SADC
ns
10 μM EITC
ns
benzimadazole
10 μM benomyl
2.3*
triazines
10 μM DACT
3.2***
metal
20 μM Fe(ClO4)2
1.8*
20 μM MnCl2
0.36**
E1
inhibiter
20 μM Pyr-41
0.40**
other
4-hydroxynonenal
3.2*
HEK293 cells were incubated in the
presence of the above compounds for 6 h as described in the Materials and Methods. The mean ratio of ub-E1/E1
values (+SE) for each treatment group was calculated and compared
to control, using one-way ANOVA and Tukey’s multiple comparison
test (*, p < 0.05; **, p <
0.01; ***, p < 0.0001; n = 5
for all groups).
The level
of ub-E1 inhibition is
calculated as follows: (OD ub-E1/E1compound)/(OD ubE1/E1control). PYDTC, pyrrolidine dithiocarbamate; ZnDEDC, zinc
diethlydithiocarbamate; NaDEDC, sodium diethyldithiocarbamate; EPTC, s-ethyl dipropylthiocarbamate; SADC, sarcosine dithiocarbamate;
DACT, diaminochlorotriazine; ns, not significant
HEK293 cells were incubated in the
presence of the above compounds for 6 h as described in the Materials and Methods. The mean ratio of ub-E1/E1
values (+SE) for each treatment group was calculated and compared
to control, using one-way ANOVA and Tukey’s multiple comparison
test (*, p < 0.05; **, p <
0.01; ***, p < 0.0001; n = 5
for all groups).The level
of ub-E1 inhibition is
calculated as follows: (OD ub-E1/E1compound)/(OD ubE1/E1control). PYDTC, pyrrolidine dithiocarbamate; ZnDEDC, zinc
diethlydithiocarbamate; NaDEDC, sodium diethyldithiocarbamate; EPTC, s-ethyl dipropylthiocarbamate; SADC, sarcosine dithiocarbamate;
DACT, diaminochlorotriazine; ns, not significant
Preparation of Protein Extracts and Determination
of Protein
Concentrations
Individual plates were washed once with PBS,
and 0.5 mL of Accutase was applied to detach cells from the plate’s
surface. Following a short incubation at 37 °C in 5% CO2, the plates were retrieved, and the cells were resuspended in 10
mL of PBS, triturated to a single cell suspension, and transferred
to a 15 mL conical tube. An aliquot of the cell suspension was removed
to determine cell viability using the Sceptor 2.0. Cells were exposed
to compounds for 6 h, and cultures were used only when no significant
differences in viability existed between controls and treated samples
and only when their viability was 85% or better. The cell suspension
was subjected to centrifugation at 400g for 5 min.
The supernatant was aspirated from the tube, and the cell pellet was
lysed with the addition of a protein extraction buffer containing
50 mM citrate, 150 mM NaCl, 0.2% NP-40, 3 mM EDTA, pH 4.6, and protease
and phosphatase inhibitor cocktail tablets (Roche Diagnostics, Manneheim,
Germany) at recommended concentrations. Extracts were subjected to
centrifugation at 21 000g for 30 min to pellet
cell membrane debris, and the supernatant containing cytosolic and
nuclear proteins was retrieved and transferred to a clean tube. Extracts
were snap-frozen on dry ice and placed at −80 °C for storage.
Protein concentrations were determined using the modified Lowry protein
or BSA assay kits (Thermo Scientific, Waltham, MA).
Analysis of
Activated E1 Protein
The levels of ub-E1
were detected using an established method.[21] Five micrograms of protein extracts from treated and untreated cell
lysates was subjected to SDS-PAGE gel electrophoresis under nondenaturing
conditions, and the separated proteins were transferred to PVDF membranes.
Membranes were blocked in phosphate buffered saline containing 0.05%
Tween-20 (PBST) and 5% bovine serum albumin (BSA) and subsequently
incubated with a primary rabbit polyclonal antibody against E1 (PW8385,
Enzo Life Sciences, Plymouth Meeting, PA). Membranes were washed three
times with PBST and incubated with an anti-rabbit polyclonal secondary
antibody conjugated to horseradish peroxidase (HRP) diluted in PBST
with 1% BSA for 1 to 2 h (Sigma-Aldrich, St. Louis, MO). Final washes
were performed, and ubE1/E1 was visualized as two bands of approximate
molecular weights of 110 and 117 kDa using Pierce enhanced chemiluminescence
(ECL) western blotting substrate for chemiluminescence detection (ThermoScientific,
Waltham, MA) as directed. HyBlot CL autoradiography films (Danville
Scientific, Matuchen, NJ) were exposed to the treated blots, and developed
films were scanned with a GS-700 densitometer. The data was analyzed
using the Quantity One 1D analysis program, version 4.1 (Bio-Rad,
Hercules, CA). The ratio of the activated higher molecular weight
ub-E1 species to the nonactivated lower molecular weight species was
calculated using densitometry. Comparisons of the mean ratios for
the two groups were performed using the unpaired t-test.
Immunoblot Procedures for Detection of Heme-oxygenase 1 (HO-1)
and Total E1
The appropriate amount of protein extract necessary
for detection of each protein was determined empirically using western
blot analysis. Briefly, protein extract (5–30 μg) was
diluted in LDS sample buffer (Life Technologies, Carlsbad, CA) containing
50 mM dithiothreitol (DTT), heated at 70 °C for 10 min, and subjected
to SDS-PAGE gel electrophoresis. The separated proteins were transferred
to PVDF membranes (Millipore, Temecula, CA) using the semidry blotting
method (Invitrogen, Carlsbad, CA), and the membranes were blocked
in PBS containing 0.05% Tween-20 (PBST) and 5% BSA. The blots were
subsequently incubated with primary antibodies for the protein of
interest, including rabbit anti-E1 and mouse anti-HO-1 (Enzo Life
Sciences, Plymouth Meeting, PA). Membranes were washed three times
with PBST and incubated with the appropriate secondary antibodies
(goat anti-rabbit-HRP or goat anti-mouse-HRP, 1/1000 dilution, Sigma-Aldrich,
St. Louis, MO) diluted in PBST with 1% BSA for 1 to 2 h. Final washes
were performed, and proteins were visualized and analyzed as described
above.
Isolation of E1 and Characterization of Covalent Modifications
by LC/MS/MS
Affinity binding and cross-linking of E1 protein
to Dynabeads with protein G (Dynabeads) (Life Technologies, Carlsbad,
CA) was accomplished as follows: Dynabeads were resuspended, and 7.5
mg of the bead slurry was transferred to a microfuge tube. The beads
were washed three times with 500 μL of 0.1 M citrate/phosphate
buffer, and a solution of 50 μg of a rabbit polyclonal antibody
(Bethyl Laboratories, Montgomery, TX) in 200 μL of citrate/phosphate
buffer was prepared and added to the beads following the washes. The
mixture was incubated for 3 h at 4 °C to allow for affinity binding
of the antibody to the beads. Following the incubation, the bead/antibody
mixture was washed three times with citrate/phosphate buffer and with
two subsequent washes with 20 mM triethanolamine, pH 8.2 (TEA). Subsequently,
250 μL of a 20 mM solution of the imidoester cross-linker dimethyl
pimelimidate·2HCl (DMP) (ThermoScientific) in 20 mM TEA was added,
and the mixture was incubated for 30 min at room temperature with
rocking. The DMP solution was removed, and the cross-linked bead/antibody
mixture was washed for 15 min in 50 mM Tris, pH 7.5, at room temperature
followed by three washes with PBST and then incubation in 250 μL
of 0.1 M glycine for 5 min at room temperature. Three more washes
with PBST were applied, and the bead/antibody mixture was collected,
resupended in 250 μL of PBST, and stored until use at 4 °C.
For the immunoprecipitation procedure, the prepared antibody/bead
mixture was resuspended, and 25 μL of the slurry was transferred
into microfuge tubes for each sample and washed three times with 500
μL of PBST. The last wash was removed from the beads, and 100
μg of cell protein extract in 250 μL of PBST was added
to the beads. The mixture was incubated at 4 °C for 3 h with
rotation. The beads were washed three times with PBST and resuspended
in 20 μL of 1% formic acid, the solution was evaporated using
the SpeedVac (GMI, Ramsey, MN), and the dried proteins were stored
at 4 °C until processed. To determine covalent protein modifications,
the dried proteins were first resuspended in a solution of 8 M urea
and 100 mM Tris, pH 8.5, and reduced with TCEP (10 mM). Sample was
diluted back to 2 M urea, trypsin was added, and digestion was allowed
to proceed overnight at 37 °C. Data on resulting peptides were
acquired by first separating them on a 20 cm × 0.1 mm RP analytical
column packed into a nanospray emitter tip directly coupled to an
Q-Exactive mass spectrometry (ThermoFisher) using an aqueous (A: 0.1%
formic acid) to organic (B: acetonitrile, 0.1% formic acid) gradient
delivered by an Eksigent HPLC pump at 400 nL/min. Starting gradient
conditions were 98% A and 2% B, and after a 10 min load phase, B was
ramped to 40% over 70 min and was then further ramped to 95% over
5 min, held for 1 min, and then returned to 98% A for the remainder
of the 90 min cycle. Peptides were ionized directly into the mass
spectrometry, where both intact masses (MS) and fragmentation patterns
(MS/MS) of the peptides were collected. Peptide MS/MS spectral data
were searched against the protein database using Sequest,[27] and identifications were collated and filtered
using Scaffold (Proteosome Software Inc., Portland, OR).
Determination
of Protein Carbonyl Content
Carbonylated
proteins were quantified using a published method.[28] Protein (2.5–5.0 μg) in 5 μL of lysis
buffer was added to 5 μL of 12% sodium dodecyl sulfate and 10
μL of 20 mM 2,4-dinitrophenylhydrazine (DNPH) in 1,1,1-trichloroacetic
acid. The solution was vortexed and incubated at 25 °C for 20
min, and then 7.5 μL of neutralizing solution was added (2 M
Tris, 30% glycerol, 19% 2-mercaptoethanol). Negative protein controls
were prepared similarly except that 1,1,1-trichloroacetic acid without
DNPH was used. Equal amounts of DNPH derivatized and negative control
protein samples were loaded, separated by SDS-PAGE, and transferred
to Immobilon-P membrane using an XCell II Blot Module (Invitrogen,
Carlsbad, CA). After blocking nonspecific binding sites, the membranes
were probed with a 1:10000 dilution of a rabbit monoclonal anti-glyceraldehyde
3-phosphate dehydrogenase (GAPDH) (2118S, Cell Signaling Technology
Inc., Danvers, MA), and GAPDH was measured by densitometry after incubation
using horseradish peroxidase conjugated secondary antibody (A-8275,
anti-rabbit-HRP, Sigma, St. Louis, MO, dilution 1:20000) and chemiluminescence.
The membranes were then probed using polyclonal rabbit anti-DNPH antibody
(A-6430: Molecular Probes, Eugene, OR, dilution 1:10000), and the
carbonylated proteins were measured using densitometry after incubation
with HRP-conjugated anti-rabbit secondary antibody and chemiluminescence.
The optical density of carbonylated proteins for each sample was normalized
to the optical density of GAPDH within the same sample.
In Vitro Dithiocarbamate
Incubations and Malondialdehyde (MDA)
Analysis
An emulsion of ethyl arachidonate in 0.1 M phosphate
buffer containing 0.2% SDS (pH 7.4) was prepared by removing the solvent
from a 100 mM solution in chloroform (80 μL) and sonicating
the residue in the same buffer (1 mL) for 5 min. An aliquot (150 μL)
of the suspension was mixed with 1 mM CuCl2 20 mM ascorbic
acid and phosphate buffer (pH 7.4) with ziram or DMDC alone or combined
with triethylenetetramine hydrochloride (TET) in the same buffer.
The final concentrations were 4 mM ethyl arachidonate, 4 mM ascorbic
acid, 100 μM Cu2+, 50 μM ziram, 100 μM
DMDC, and 600 μM TET. Controls were incubated without dithiocarbamate
or TET. The samples were incubated at 37 °C for 2 h and centrifuged
at 10 000g for 10 min. Next, 100 μL
aliquots of supernatant were mixed with 100 μL of 2,6-di-tert-butyl-4-methylphenol (BHT) in ethanol (20 mM) and 800
μL of diethyl thiobarbiturate acid (DETBA) reagent (100 mg of
DETBA was dissolved in 10 mL of warm ethanol and mixed with 40 mL
of 0.125 M phosphate buffer (pH 3.0)) and incubated at 95 °C
for 1 h. The solutions were cooled to room temperature, then purified
by passing through 1 mL Supelclean LC-18 SPE cartridges (Supelco,
Inc., Bellefonte, PA), eluted with methanol, and dried. The residue
was reconstituted with 100 μL of a 1:1 mix of eluent A and B.
Eluent A was 10% acetonitrile with 0.1% triethanolamine and eluent
B was 100% acetonitrile. After filtration through 0.22 μm SPIN-X
filters (Corning Inc., Corning, NY), the samples were analyzed using
a LichroCART 125 × 4 mm Lichrosphere 100 RP-18 (5 μm) column
(EM Science, Gibbstown, NJ) running at 1 mL/min. The elution profile
was 100% A going to 90% B in 7 min, holding for 5 min, and returning
to A in 1 min. A Shimadzu LC-10AD pump connected to a SIL-10AD autosampler
and SPD-10A UV/vis detector controlled by a SLC-10A controller and
EZStart 7.4 software were used for the analysis. Under these conditions,
the MDA adduct was detected at 530 nm and eluted at 8.5 min. Standard
solutions of 1,1,3,3-tetramethyoxypropane (TMP), precursor to MDA,
in a 1:1 mixture of ethanol and water were made and reacted with DETBA
reagent to generate a MDA standard curve.
ICPMS Measurement of Intracellular
Metals
One hundred
and twenty micrograms of protein extract was digested overnight in
1 mL of 50% OmniTrace Ultra nitric acid in metal-free
conical tubes (VWR, Radnor, PA) and then diluted with 9 mL of Millipore
high-resistance purified water. Element quantification analysis was
performed with Thermo Element 2 HR-ICPMS (Thermo Fisher Scientific,
Bremen, Germany) equipped with the ESI autosampler (Elemental Scientific,
Omaha, NE). The diluted acid digested samples were taken up through
automated aspiration via a 0.50 mm i.d. sample probe and capillary.
Elements of interest were measured on isotopes 55Mn, 56Fe, 63Cu, and 66Zn at medium resolution
(R = 4300) to separate any potential molecular interference.
Statistical Analyses
One-tailed and two-tailed Student’s t tests, one-way ANOVA, Tukey’s multiple comparison
test, and Dunnett’s test were performed using Prism 4 (GraphPad
Software, Inc.). For proteomics expression comparisons, Decyder software,
version 6.5 (GE Healthcare Bio-Sciences) was used. Statistical significance
was taken to be p < 0.05 unless otherwise noted.
Treatment groups consisted of n = 5 unless otherwise
noted.
Results and Discussion
Previous
studies demonstrated that E1 was covalently modified at
reactivecysteines within the ubiquitin-binding groove in brain tissues
of rats treated with DEDC and in HEK293 cell extracts exposed to thiol-reactive
electrophiles.[20,21] To determine if E1 is a target
for electrophilic adduction by other dithiocarbamates, we used an
in vitro cell culture exposure assay followed by western blot analysis
to quantify ub-E1. We used HEK293 cells because they offer a robust
human cell line amenable to studying the multiple incubation conditions
employed in this study and because they are a previously established
model for evaluating covalent adduction of E1 by thiol-reactive electrophiles
and ziram-mediated inhibition of E1.[19,20] Subsequent
to establishing a decrease in ub-E1 in our samples, E1–enriched
cell extracts were subjected to LC/MS/MS for detection of dithiocarbamate-derived
adducts.We utilized two dithiocarbamates, ziram and DMDC (Scheme 1), in these studies, as the structure and potential
adducts formed by these compounds would be comparable to those for
DEDC.[21] Ziram at 10 μM produced a
75% reduction in ub-E1, and 20 μM DMDC significantly decreased
ub-E1 to almost half that of the controls (Figure 1); ziram also significantly inhibited E1 at 1 μM (Supporting Information). To assess whether altered
expression of E1 contributed to the changes in the ratio of ub-E1
to E1, we determined total E1 levels in our treated cells and found
that they remained unchanged (data not shown). To determine if covalent
modification occurred on the reactive E1 cysteines identified for
DEDC in vivo, we searched for covalent modifications in E1-enriched
HEK293 extracts using LC/MS/MS. On the basis of the structures of
ziram and DMDC and the previous adduct identified for DEDC, we analyzed
for an S-methylaminocarbonyl adduct corresponding
to a mass of +58 Da on all peptides identified in the digests (typically,
70–80% sequence coverage was obtained). However, in contrast
to our in vivo studies, this adduct was not detected in the cell extracts
of the treated HEK293 cells (data not shown). To evaluate the potential
of glutathiotinylation, we also searched for +305 Da modifications,
but no evidence for this modification was observed. This suggests
that significant E1 inhibition was produced by ziram and DMDC either
at levels of E1 adduction that were not detectable by LC/MS/MS or
through a mechanism independent of cysteine adduction. The shorter
exposure duration used in the cell cultures or a difference in the
capacity of the HEK293 cells to bioactivate these dithiocarbamates
may have contributed to this observation. Additionally, although DMDC
and DEDC are structurally very similar and subject to the same metabolic
pathways, a smaller contribution from the bioactivation pathway leading
to adduct formation in DMDC’s biotransformation cannot be ruled
out from this study. While these experimental limitations may be responsible
for the lack of detectable adducts, the results highlight the possibility
that other cellular mechanisms contribute to our observed inhibition
of E1. Earlier studies in cell models suggest that E1 activation is
redox sensitive, and in vivo studies have demonstrated that dithiocarbamates
complex metals and cross cell membranes, potentially increasing intracellular
levels of redox active metals.[16,23,24,29] Thus, we reasoned that exposure
to ziram and DMDC may be contributing to the observed E1 inhibition
by promoting intracellular oxidation, a mechanism that could potentially
be shared by many environmental agents and disease conditions. Therefore,
our results prompted us to investigate this alternative mechanism.
Scheme 1
Figure 1
Inhibition of E1 activation by 10 μM ziram (A) and 20 μM
DMDC (B) in the presence and absence of 60 μM TET. Representative
western blots show activated (ub-E1) and nonactivated (E1) species
of E1 ubiquitin activating enzyme separated by SDS-PAGE. Graphs depict
the mean ratio of ub-E1/E1 values (+SE) for each treatment group.
Statistical comparisons were performed using one-way ANOVA followed
by Tukey’s multiple comparison test.
Inhibition of E1 activation by 10 μM ziram (A) and 20 μM
DMDC (B) in the presence and absence of 60 μM TET. Representative
western blots show activated (ub-E1) and nonactivated (E1) species
of E1 ubiquitin activating enzyme separated by SDS-PAGE. Graphs depict
the mean ratio of ub-E1/E1 values (+SE) for each treatment group.
Statistical comparisons were performed using one-way ANOVA followed
by Tukey’s multiple comparison test.Previous studies reported E1 activity to be reduced in states
of
oxidative stress, and certain dithiocarbamates have been shown to
complex and transport redox active copper into cells.[22,25,26,30] To explore the possibility that decreased ub-E1 levels in our cell
culture assay resulted from an increase in intracellular copper, we
exposed cells to 10 μM ziram or 20 μM DMDC in the presence
of a known copper chelator, TET, and determined ub-E1 levels (Figure 1). Sixty micromolar TET significantly mitigated
the decrease of ub-E1 due to ziram exposure but did not completely
prevent decreased ub-E1 levels when coincubated with DMDC. Subsequent
studies using coincubation with 120 μM TET did maintain ub-E1
levels similar to that of the control in DMDC-treated samples (data
not shown). Thus, we chose to continue our experiments utilizing 60
μM TET, as this was sufficient to maintain ub-E1 levels with
ziram treatment and minimize loss of ub-E1 in DMDC-treated samples.
We next determined the changes in intracellular levels of copper and
zinc, produced by ziram or DMDC, with and without TET. Our results
show that copper levels were significantly elevated in cells treated
with either dithiocarbamate alone, albeit to different extents (Figure 2). In ziram-treated samples, copper levels were
3-fold higher than that in control, whereas DMDC produced a smaller
but significant increase. Zinc measurements revealed an approximately
2-fold increase in intracellular zinc for ziram, with no significant
change for DMDC treatment. Thus, although the incubation conditions
exposed the cells to molar equivalents of N,N-dimethyldithiocarbamate, the zinc complexed formulation
was more effective in transporting copper and zinc intracellularly
and inhibiting E1 than the sodium salt.
Figure 2
Intracellular zinc and
copper levels in samples treated with 10
μM ziram (A) and 20 μM DMDC (B) in the presence and absence
of 60 μM TET. Mean values (+SE) are shown. Statistical comparisons
were performed using one-way ANOVA followed by Dunnett’s multiple
comparison test.
Intracellular zinc and
copper levels in samples treated with 10
μM ziram (A) and 20 μM DMDC (B) in the presence and absence
of 60 μM TET. Mean values (+SE) are shown. Statistical comparisons
were performed using one-way ANOVA followed by Dunnett’s multiple
comparison test.Although 60 μM
TET prevented intracellular copper transport
by DMDC, it had no effect on intracellular copper levels in ziram-treated
cells. Zinc also remained significantly elevated in ziram-treated
cells. Therefore, it appeared that the ability of TET to decrease
ziram-mediated inhibition of E1 was not entirely dependent on preventing
intracellular transport of copper or zinc. To address the possibility
that TET maintains E1 activity through moderating dithiocarbamate-promoted
oxidative injury, we determined the ability of TET to decrease ziram-
and DMDC-mediated lipid peroxidation, protein oxidative damage, and
expression of heme oxygenase-1 (HO-1). For lipid peroxidation, we
utilized a previously established in vitro system composed of an emulsion
of ethyl arachidonate incubated with CuCl2 in the presence
of either ziram or DMDC, with or without TET, and measured production
of MDA.[23] Both ziram and DMDC significantly
increased MDA, and similar to intracellular transport of copper, ziram
was more effective in generating MDA (Figure 3). Coincubation with TET prevented MDA production for both compounds.
To evaluate protein oxidative damage, we measured protein carbonyls
in HEK293 cells. Both ziram and DMDC produced a significant increase
in the levels of protein carbonyls relative to controls, and TET was
effective in preventing the elevated protein carbonylation produced
by both dithiocarbamates (Figure 4). Thus,
although TET did not completely prevent the intracellular transport
of copper, it did diminish the oxidative stress associated with dithiocarbamate
exposure, possibly through sequestering copper and reducing the level
of dithiocarbamate copper complexes.
Figure 3
MDA production by ziram and DMDC in the
presence and absence of
TET. MDA levels were determined in an emulsion of 4 mM ethyl arachidonate,
4 mM ascorbic acid, 100 μM CuCl2 treated with 50
μM ziram, or 100 μM DMDC with and without 600 μM
TET as well as in controls incubated similarly without dithiocarbamate
or TET. Statistical comparisons were performed using one-way ANOVA
followed by Dunnett’s multiple comparison test.
Figure 4
Carbonylated protein determinations in samples treated
with 10
μM ziram and 20 μM DMDC in the presence and absence of
60 μM TET. Protein samples were obtained from control cells
incubated with DMSO vehicle and exposed cells incubated with either
10 μM ziram or 20 μM DMDC in the presence and absence
of 60 μM TET, reacted with 2,4-dinitrophenylhydrazine, and quantified
by western blot using an anti 2,4-DNP antibody. Mean optical density
(OD) values (+SE), expressed as a ratio to GAPDH as an intra sample
standard and then normalized to control mean values, are shown. Statistical
comparisons were performed using one-way ANOVA and Dunnett’s
multiple comparison test or two-way unpaired Student’s t test (control vs TET).
MDA production by ziram and DMDC in the
presence and absence of
TET. MDA levels were determined in an emulsion of 4 mM ethyl arachidonate,
4 mM ascorbic acid, 100 μM CuCl2 treated with 50
μM ziram, or 100 μM DMDC with and without 600 μM
TET as well as in controls incubated similarly without dithiocarbamate
or TET. Statistical comparisons were performed using one-way ANOVA
followed by Dunnett’s multiple comparison test.Carbonylated protein determinations in samples treated
with 10
μM ziram and 20 μM DMDC in the presence and absence of
60 μM TET. Protein samples were obtained from control cells
incubated with DMSO vehicle and exposed cells incubated with either
10 μM ziram or 20 μM DMDC in the presence and absence
of 60 μM TET, reacted with 2,4-dinitrophenylhydrazine, and quantified
by western blot using an anti 2,4-DNP antibody. Mean optical density
(OD) values (+SE), expressed as a ratio to GAPDH as an intra sample
standard and then normalized to control mean values, are shown. Statistical
comparisons were performed using one-way ANOVA and Dunnett’s
multiple comparison test or two-way unpaired Student’s t test (control vs TET).HO-1 protein expression levels are regulated by the antioxidant
response element, have been shown to increase from dithiocarbamate
exposure, and can be used as a marker for the cellular response to
oxidative stress.[24] Both DMDC and ziram
significantly increased HO-1 protein expression (Figure 5). TET prevented the increased HO-1 expression produced by
DMDC. However, while the addition of 60 μM TET did not significantly
reduce this effect for ziram, coincubation with 120 μM TET did
significantly decrease HO-1 levels relative to ziram alone. Because
transcriptional regulation of HO-1 includes participation of a metal
response element present in the 5′ regulatory region of the
gene in addition to the antioxidant response element, the observed
HO-1 expression for ziram likely reflects the elevated levels of copper
and zinc that remained in the TET and ziram-treated cells.
Figure 5
Protein expression
levels of heme oxygenase-1 (HO-1) in cells treated
with 10 μM ziram (A) and 20 μM DMDC (B) in the presence
and absence of TET. The expression level of HO-1 was determined by
western blot. Results are shown as the mean (+SE) ratio to GAPDH within
the same samples. Statistical comparisons were performed by one-way
ANOVA and Tukey’s multiple comparison test; n = 5 for all groups.
Protein expression
levels of heme oxygenase-1 (HO-1) in cells treated
with 10 μM ziram (A) and 20 μM DMDC (B) in the presence
and absence of TET. The expression level of HO-1 was determined by
western blot. Results are shown as the mean (+SE) ratio to GAPDH within
the same samples. Statistical comparisons were performed by one-way
ANOVA and Tukey’s multiple comparison test; n = 5 for all groups.To delineate the relative contributions of copper and zinc
to E1
inhibition, we performed experiments under metal-free media incubation
conditions in which copper and zinc levels could be modulated independently.
Cells maintained in EMEM were washed with PBS, incubated in Hank’s
balanced salt solution (HBSS), and exposed to ziram or DMDC in the
presence and absence of added ZnCl2 or CuCl2 and to either ZnCl2 or CuCl2 alone. Under
these conditions, all test compounds significantly decreased ub-E1
levels relative to that in controls, and combining DMDC with either
ZnCl2 or CuCl2 resulted in a further decrease
of ub-E1 relative to that in cells treated with DMDC alone (Figure 6). In the lysates obtained from cells incubated
with ziram combined with CuCl2, neither a band for ub-E1
nor E1 could be detected by western blot. Under these metal-free incubation
conditions, ziram still significantly increased intracellular zinc
and copper, whereas DMDC did not significantly change either metal
(Figure 7). The zinc contained in ziram can
account for the elevation of zinc in this incubation system, but the
ability of ziram to elevate copper demonstrates the greater efficiency
of ziram relative to DMDC to either scavenge trace quantities of copper
or to mobilize copper located within the cell membrane. The ability
of ZnCl2 or CuCl2 alone to inhibit E1 and to
enhance the effect of both dithiocarbamates is consistent with the
elevation of either zinc or copper contributing to inhibition of E1.
Thus, the relative efficacy of ziram and DMDC to elevate intracellular
levels of these metals could account for their relative potency for
E1 inhibition. However, considering the data obtained from coincubation
of the dithiocarbamates with TET, the elevation of zinc or copper
alone is not sufficient but also requires that the metals be in a
redox-active form accompanied by increased oxidative stress. An unexpected
finding was the lack of a significant change in intracellular copper
for DMDC even though it produced a significant decrease in ub-E1.
Although it cannot be determined from the current study, DMDC may
have produced a small but biologically relevant increase in copper
that was not detectable in our methodology or it may have shifted
a fraction of the protein-associated intracellular copper to a more
redox-active form, e.g., a DMDCcopper complex.
Figure 6
Inhibition of E1 activation
in HBSS under metal-free culture conditions.
Cells were exposed to 10 μM ziram, 20 μM CuCl2, 20 μM ZnCl2, 20 μM DMDC, 20 μM DMDC
plus 20 μM CuCl2, or 20 μM DMDC plus 20 μM
ZnCl2. Graphs depict the mean ratio of ub-E1/E1 values
(+SE) for each treatment group as the percent of control. Statistical
comparisons were performed using one-way ANOVA followed by Tukey’s
multiple comparison test. In samples incubated with 10 μM ziram
plus 20 μM CuCl2, bands were not detectable for either
ub-E1 or E1.
Figure 7
Intracellular copper
and zinc levels in HBSS under metal-free culture
conditions. Cells were exposed to 10 μM ziram or 20 μM
DMDC, 20 μM CuCl2, 20 μM ZnCl2,
10 μM ziram plus 20 μM CuCl2, 20 μM DMDC
plus 20 μM CuCl2, or 20 μM DMDC plus 20 μM
ZnCl2. Mean values (+SE) are shown. Statistical comparisons
were performed using one-way ANOVA followed by Tukey’s multiple
comparison test.
Inhibition of E1 activation
in HBSS under metal-free culture conditions.
Cells were exposed to 10 μM ziram, 20 μM CuCl2, 20 μM ZnCl2, 20 μM DMDC, 20 μM DMDC
plus 20 μM CuCl2, or 20 μM DMDC plus 20 μM
ZnCl2. Graphs depict the mean ratio of ub-E1/E1 values
(+SE) for each treatment group as the percent of control. Statistical
comparisons were performed using one-way ANOVA followed by Tukey’s
multiple comparison test. In samples incubated with 10 μM ziram
plus 20 μM CuCl2, bands were not detectable for either
ub-E1 or E1.Intracellular copper
and zinc levels in HBSS under metal-free culture
conditions. Cells were exposed to 10 μM ziram or 20 μM
DMDC, 20 μM CuCl2, 20 μM ZnCl2,
10 μM ziram plus 20 μM CuCl2, 20 μM DMDC
plus 20 μM CuCl2, or 20 μM DMDC plus 20 μM
ZnCl2. Mean values (+SE) are shown. Statistical comparisons
were performed using one-way ANOVA followed by Tukey’s multiple
comparison test.The studies presented
here support intracellular transport of copper
and zinc accompanied by oxidative stress as a mechanism for dithiocarbamate-mediated
E1 inhibition. These data suggest that E1 is a common target of other
environmental toxins that can perturb the redox status of the cell.
To further evaluate the potential of our cell culture assay and the
use of monitoring E1 function as a generalized response of exposure
to environmental toxins, we evaluated ub-E1/E1 ratios in samples treated
with a series of compounds, including additional dithiocarbamates,
thiocarbamates, triazines, benzimadazoles, and several metals (Table 1). Among the compounds tested, seven of the pesticides
produced a significant decrease in ub-E1, and four produced a significant
increase in activated E1 when compared to that in the control. We
also observed a significant increase in ub-E1 with exposure to Fe(ClO4)2 and 4-hydroxynonenal as well as a significant
decrease in ub-E1 by MnCl2 and the E1 specific inhibitor,
pyr-41, compared to that in control samples. It is interesting to
note that while the majority of the compounds that altered E1 function
did so by inhibiting its activity, some compounds and one metal increased
ub-E1. While, to date, our investigations have supported two putative
mechanisms by which E1 activity may be altered, the modulation of
E1 activity by the compounds in Table 1 suggests
that additional mechanisms may be elucidated through continued analysis
of altered E1 function.Collectively, our results are consistent
with E1 regulating downstream
targets, at least partially, in response to intracellular levels of
ROS. Two earlier studies also support this concept.[16,29,31] In those studies, E1 inhibition increased
when the antioxidant capacity was diminished in PC12 cells through
depletion of glutathione, and upon reestablishment of normal levels
of glutathione, E1 activity returned.[29,31] More recent
studies in yeast cultures also showed that reactivecysteines on E1
and the E2 conjugase Cdc34 were redox-sensitive and that, when oxidized,
they effectively sequestered the proteins’ catalytic cysteines,
leading to downregulation of cell cycle events dependent on E1 ubiquitination
and Cdc34 function.[29] Thus, it is possible
that the redox sensitivity of E1 observed in our studies is an integral
part of its function and promotes maintenance of cellular homeostasis
through its responsiveness to cellular oxidation states.Numerous
studies have demonstrated the importance of ubiquitin
regulation to the development and function of the central nervous
system. The importance of E1 activity in nervous system function is
underscored by the fact that mutations in E1 rarely result in viable
offspring and infants that survive do so briefly and suffer from X-linked
infantile spinal muscular atrophy (XL-SMA).[32] Identifying E1 as being susceptible to perturbation by environmental
toxins lends support to the premise established by multiple epidemiological
studies that environmental pesticides are potential contributors to
the etiology of neurodegenerative disease. In fact, the singular nature
and apical positioning of E1 in the cascade of ubiquitin-regulating
events make it a strong candidate as a gateway molecule for environmental
perturbation of cellular function. Furthermore, E1 susceptibility
in concert with increased sensitivity of gene variants of UPS-related
proteins, as reported in Rhodes et al., could potentiate or compound
the individual contribution of each of these biological factors.[15] The studies reported here support this premise
and suggest that the redox-sensitive nature of E1 may be an essential
part of its biological function as well as contribute to its vulnerability
to deregulation by environmental agents. Continued assessment using
both in vivo and in vitro models is essential to further our understanding
of how alterations in E1 activity produced by environmental factors
can influence biological systems and contribute to neurological disease.
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