| Literature DB >> 25713290 |
Jonathan C Schisler1, Trisha J Grevengoed2, Florencia Pascual2, Daniel E Cooper2, Jessica M Ellis2, David S Paul2, Monte S Willis3, Cam Patterson1, Wei Jia4, Rosalind A Coleman2.
Abstract
BACKGROUND: Long chain acyl-CoA synthetases (ACSL) catalyze long-chain fatty acids (FA) conversion to acyl-CoAs. Temporal ACSL1 inactivation in mouse hearts (Acsl1(H-/-)) impaired FA oxidation and dramatically increased glucose uptake, glucose oxidation, and mTOR activation, resulting in cardiac hypertrophy. We used unbiased metabolomics and gene expression analyses to elucidate the cardiac cellular response to increased glucose use in a genetic model of inactivated FA oxidation. METHODS ANDEntities:
Keywords: acyl‐CoA synthetase; fuel switching; glutathione; mTOR; oxidative stress
Mesh:
Substances:
Year: 2015 PMID: 25713290 PMCID: PMC4345858 DOI: 10.1161/JAHA.114.001136
Source DB: PubMed Journal: J Am Heart Assoc ISSN: 2047-9980 Impact factor: 5.501
DNA Oligonucleotide Primer Sequences Used for qPCR Analysis of mRNA Expression in Mouse Heart
| cDNA | Forward Primer | Reverse Primer |
|---|---|---|
|
| GGAGGGGAGCCCAAGCCTCA | TTCCCAGCCCTTGAATCAGCAC |
|
| GCGCGGCTGTTTGTACCTCC | CATCGGGCTCGTGTCCGTCC |
|
| GCGGCCTCCAACCGGTCTTGTC | GCTACAGGCGGACTGCAGGCA |
|
| CTGCTCAGGGCAGCCAAGCC | CCAGGGACCTGGGAGGAGCC |
|
| GGTGCTGAGTATGTCGTGGA | ACTGTGGTCATGAGCCCTTC |
|
| GCTATGCTGCCCTCTGGCGG | TCGCCCACGCACATGCTCAG |
|
| AGATCGTGCTGGGGCTTGGCA | CTGCCGTTCTCGTCGTTCCCG |
|
| CCGTGCTTCACTACTTCAAT | GCATCCATGGGAGGCTTTCT |
|
| TCAAGTCGTGAATAATACC | CCACAGGACAGTACAGGATG |
|
| CAGTGCGAAATGAAGCCGTT | GCTGCCCTGGTTTTGTTGAG |
|
| GTTGGAAACCCCGCAGACAG | ATAGGGCTGTACGGAGTCGT |
|
| CCGCTGTCCATGAAGCA | GCAGAAAAGCAAAGGACGTT |
|
| CCACCGGACCTGCTTTGGGG | GGCCTCCATGTTGTCTGGGCG |
|
| CCGCTGACCCTGCGACACAGA | TTCCCCCAAAGCAGCCCGTC |
|
| AGTGCCTCAAGGGGACCGCA | GACTTCAGGGCGGCGAGAGC |
|
| GTAGGTCACCGTTTCTTTGTGGAC | TGGGCTGAGCAATACAGTTCAAC |
|
| GCGACCTCAAGCTGCGTCGC | TGGTCCCACGTAGGCAGGGCA |
|
| GCGACCTCAAGCTGCGTCGC | TGGTCCCACGTAGGCAGGGCA |
Sequences are listed in the 5′ to 3′ orientation.
Figure 1.Global changes in gene expression in Acsl1H−/− hearts. A, Principal component analysis (PCA) of global changes in cardiac gene expression was performed using the levels of 7581 genes in Acsl1flox/flox (red closed circles) and Acsl1H−/− (green closed circles) mice after 10 weeks of rapamycin treatment, represented by a scatter plot of the first (PC1) vs second principal component (PC2). Four eigenvectors were calculated for PCA and data represented in the scatter plot are scaled to unit standard deviation. Confidence ellipses categorized by genotype represent 2 standard deviations. B, Significance analysis of microarrays (SAM) plot of observed scores plotted against the expected scores. The solid line represents observed=expected, whereas the hashed lines indicate the significance threshold based on Δ=0.851. The genes identified as differentially expressed are indicated by red and blue open circles, indicating higher and lower expression, respectively, of these genes in Acsl1H−/− mouse hearts. The number of differentially expressed genes, predicted false positives, and the false discovery rate (FDR) are provided (also see Figure 2A and 2B).
Figure 2.Unsupervised gene clustering. A, Unsupervised hierarchical clustering was used to reveal natural categories in gene expression data sets. Expression values from the 7162 genes detected via microarray analysis were analyzed by sample clustering using Pearson's Dissimilarity matrix with average linkage (Partek Genomics Suite, v6.6). Two primary clusters of microarray samples were comprised solely of either Acsl1flox/flox (red) or Acsl1H−/− (green) biological replicates. The scale for the dendrogram represents the distance of clusters by Pearson's correlation coefficient. B, Unsupervised clustering of the 568 SAM positive genes. The expression values from the 568 genes (rows) from 7 samples (columns) detected as differentially expressed via microarray analysis were analyzed with hierarchical clustering using the Euclidian matrix with average linkage (Partek Genomics Suite, v6.6). As expected based on the 2 class SAM analysis used to identify differentially expressed genes, we identified 2 primary clusters of microarray samples comprised solely of either Acsl1flox/flox (red) or Acsl1H−/− (green) biological replicates. Additionally, the genes portioned into 2 groups of higher (maroon) or lower (blue) expression across the 2 genotypes. SAM indicates significance analysis of microarrays.
Figure 3.mTOR activation and expression of selected genes in ventricles from control and Acsl1H−/− mice treated with vehicle or rapamycin for 10 weeks. A, Representative immunoblots from ventricles of male mice 10 weeks after tamoxifen treatment. The levels of total and phosphorylated (P‐p70 S6K [Thr389], P‐4E‐BP1 [Thr37/46]) p70 S6K and 4E‐BP1 were quantified with ImageJ software, and the ratio of phosphorylated to total protein is shown (bottom). The values are mean±SEM. n=3, *P<0.05. B, Rapamycin treatment normalized the expression of the amino acid responsive genes Fgf21, Gdf15, Mthfd2, Trib3, Asns, as well as Gsta1 and the hypertrophy marker, Myc. C, Hif1α and Slc7a5 were also normalized with rapamycin treatment, whereas other genes altered by the loss of Acsl1 expression were insensitive to rapamycin. Data are represented by the mean±SEM from 6 biological replicates per condition. The resulting P values from the 2‐way ANOVA based on genotype (G), treatment (Tx), and of the interaction (∩) are indicated: post‐hoc test, *P<0.05, **P<0.01, ***P<0.001, ****P<0.0001 Acsl1flox/flox vs Acsl1H−/− within vehicle; †P<0.05, ††P<0.01, †††P<0.001, ††††P<0.0001 vehicle vs rapamycin within genotype. ANOVA indicates analysis of variance; mTOR, mechanistic target of rapamycin; S6K, S6 kinase.
Gene Expression Changes in Acsl1H−/− Hearts
| mRNA | Description | Fold Change Microarray | Fold Change qPCR |
|---|---|---|---|
|
| Sterol regulatory element binding transcription factor 1 | 2.33 | 2.91** |
| Hypoxia inducible factor 1, alpha subunit | 2.22 | 1.63* | |
|
| Tribbles homolog 3 | 13.10 | 13.17** |
|
| Pyruvate dehydrogenase kinase, isoenzyme 4 | 5.20 | 6.10**** |
|
| Myelocytomatosis oncogene, transcript variant 1 | 5.11 | 6.54** |
|
| Growth differentiation factor 15 | 37.78 | 76.93**** |
|
| Fibroblast growth factor 21 | 30.02 | 153.17*** |
|
| Methylene tetrahydrofolate dehydrogenase | 17.79 | 32.80*** |
|
| Asparagine synthetase | 4.26 | 17.49** |
|
| Glutathione S‐transferase, alpha | 20.81 | 14.65** |
The relative fold change in gene expression identified via microarray analysis and subsequently validated via qPCR analysis, *P<0.05, **P<0.01, ***P<0.001, ****P<0.0001.
Functional Clustering of Gene Expression Changes in Acsl1H−/− Hearts
| Functional Cluster | Genes | ES | FE |
|---|---|---|---|
| Increased expression in | |||
| Aminoacyl‐tRNA synthetases |
| 3.2 | 8.6 |
| Ribosome |
| 2.9 | 3.7 |
| Flavoproteins |
| 2.5 | 4.8 |
| Peroxisome |
| 2.2 | 5.5 |
| Sarcomere |
| 2.2 | 5.0 |
| Regulation of apoptosis |
| 2.0 | 2.1 |
| Alanine, aspartate, glutamine, and glutamate metabolism |
| 1.5 | 8.3 |
| Regulation of fatty acid and lipid metabolism |
| 1.5 | 8.8 |
| Decreased expression in | |||
| Transcription regulation |
| 5.8 | 2.0 |
| Zinc finger region |
| 4.0 | 4.3 |
| Membrane‐enclosed lumen |
| 3.9 | 2.2 |
| Ion binding |
| 2.9 | 1.4 |
| Zinc finger |
| 2.9 | 2.2 |
| Fibronectin, type III |
| 2.3 | 3.4 |
| Negative regulation of transcription |
| 1.6 | 2.1 |
| Regulation of apoptosis |
| 1.4 | 1.8 |
| Phosphate metabolic process and phosphorylation |
| 1.4 | 1.6 |
| Striated muscle tissue development |
| 1.3 | 3.1 |
Genes that were upregulated or down regulated (Figure 1B) were analyzed for functional clustering using DAVID.[19,57–58] Each functional cluster is listed with the genes comprising the cluster, as well as the enrichment score (ES), a measure of significance using a modified Fisher Exact,[19,57–58] and the fold enrichment (FE), which represents the increase in the number of genes present in the differential gene list for a given pathway compared to the expected frequency of genes associated with that pathway in the entire mouse genome.
Figure 4.Normalization of metabolite concentrations results in Gaussian distributions. Prior to statistical analysis, the metabolite counts from the LC‐TOFMS and GS‐TOFMS were log transformed and mean‐centered. A, The frequency distributions were plotted with a bin width of 0.5 (green bars) and subsequently fit to a Gaussian distribution curve (solid black line, equation and R2 value as indicated). B, To remove any potential bin size bias, the same data were analyzed with a cumulative frequency distribution plot. If the data follow a Gaussian distribution, the cumulative distribution has a sigmoidal shape, as shown here (green line). The non‐linear fit is also plotted (dotted line) with the corresponding R2 value provided. C, Outlier analysis of GC‐TOFMS metabolites. Principal component analysis (PCA) of metabolite concentrations from 13 heart samples measured on the GC‐TOFMS platform. There was a single sample that did not cluster with either genotype (highlighted by the blue circle) and contributed to over 35% of the variance as measured via PCA. This sample was removed from the GC‐TOFMS statistical analysis. GC‐ and LC‐TOFMS indicates gas chromatography and liquid chromatography‐time of flight mass spectrometry.
Figure 5.Metabolomic profiling reveals that loss of Acsl1 expression alters the cardiac metabolite profile. Levels of 115 or 157 metabolites measured by either LC‐TOFMS (left) or GC‐TOFMS (right), respectively, were subjected to both unsupervised (PCA, upper) and supervised (PLS‐DA, lower) multivariate data analysis. Data are represented using scatter plots of the first 2 components and confidence ellipses categorized by genotype represent 2 standard deviations. GC‐ and LC‐TOFMS indicates gas chromatography and liquid chromatography‐time of flight mass spectrometry; PCA, principal component analysis; PLS‐DA, partial least squares discriminant analysis.
Figure 6.Differential metabolite analysis in Acsl1‐deficient hearts. A and B, Significance analysis of metabolites (SAMet) plot of observed scores plotted against the expected scores in heart extracts from either control or Acsl1H−/− mice obtained from the LC‐TOFMS (A) or GS‐TOFMS (B). The solid line represents observed=expected, whereas the hashed lines indicate the significance threshold based on Δ=1.2. The metabolites identified as significantly different are indicated by red and blue open circles, indicating higher and lower concentrations, respectively, of these genes in Acsl1H−/− relative to control mouse hearts. The number of differential metabolite concentrations, the number of predicted false positives, and the false discovery rate (FDR) are provided. C, Unsupervised hierarchical clustering of the combined LC‐ GC‐TOFMS data set using the differential metabolites identified by SAMet in Acsl1H−/− and control mouse hearts. GC‐TOFMS indicates gas chromatography‐time of flight mass spectrometry.
Figure 7.Cardiac‐specific Acsl1 deficiency leads to increased glucose metabolism. A and B, Representative immunoblots against PDK4, deglycosylated GLUT1 and GAPDH (loading control) from ventricles of male control and Acsl1H−/− mice 10 weeks after tamoxifen treatment. The ratio of GLUT1 to GAPDH is shown (B, bottom). The values are mean±SEM. n=3 to 4, *P<0.05. C and D, [1‐14C]‐ and [2‐14C]pyruvate oxidation to CO2 from control and Acsl1H−/− ventricular homogenates 10 weeks after tamoxifen injection. The values are mean±SEM. n=5 to 6, *P<0.05. TCA indicates tricarboxylic acid.
Figure 8.Loss of Acsl1 results in elevated oxidative stress markers in the heart. A, Representative immunoblots against GSK‐3β, VDAC1 (mitochondrial marker) and GAPDH (cytosolic marker) from ventricles of male control and Acsl1H−/− mice 10 weeks after tamoxifen treatment. The levels of GSK‐3β and VDAC1 were quantified with ImageJ software, the ratio of GSK‐3β to VDAC1 calculated and the percentage of GSK‐3β in the mitochondrial fraction of control and Acsl1H−/− mice is shown (right). The values are mean±SEM. n=4, *P<0.05. B, 8‐hydroxy‐2′deoxyguanosine levels were measured as indication of DNA and RNA damage in left ventricles of male control and Acsl1H−/− mice 10 weeks after tamoxifen treatment. C, Oxidized (GSSG) and reduced (GSH) levels of glutathione were measured using a colorimetric kit. The values are mean±SEM. n=5 to 6, *P<0.05.
Figure 9.Acsl1‐dependent changes in metabolites in the biochemical pathway involving cysteine and glutathione metabolism. Metabolite concentrations are identified as either increased (red) or decreased (blue) in Acsl1H−/− hearts relative to control hearts. Upregulated (yellow) and downregulated (green) genes in this pathway are also shown (see Table S1).