Literature DB >> 25712620

Dosimetry determines the initial OH radical concentration in fast photochemical oxidation of proteins (FPOP).

Ben Niu1, Hao Zhang, Daryl Giblin, Don L Rempel, Michael L Gross.   

Abstract

Fast photochemical oxidation of proteins (FPOP) employs laser photolysis of hydrogen peroxide to give OH radicals that label amino acid side-chains of proteins on the microsecond time scale. A method for quantitation of hydroxyl radicals after laser photolysis is of importance to FPOP because it establishes a means to adjust the yield of •OH, offers the opportunity of tunable modifications, and provides a basis for kinetic measurements. The initial concentration of OH radicals has yet to be measured experimentally. We report here an approach using isotope dilution gas chromatography/mass spectrometry (GC/MS) to determine quantitatively the initial •OH concentration (we found ~0.95 mM from 15 mM H2O2) from laser photolysis and to investigate the quenching efficiencies for various •OH scavengers.

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Year:  2015        PMID: 25712620      PMCID: PMC5613943          DOI: 10.1007/s13361-015-1087-0

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  19 in total

1.  New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry.

Authors:  Jiawei Chen; Weidong Cui; Daryl Giblin; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

2.  Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry.

Authors:  Joshua S Sharp; Jeffrey M Becker; Robert L Hettich
Journal:  Anal Chem       Date:  2004-02-01       Impact factor: 6.986

3.  Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry.

Authors:  S C Pomerantz; J A McCloskey
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

Review 4.  Hydroxyl radical-mediated modification of proteins as probes for structural proteomics.

Authors:  Guozhong Xu; Mark R Chance
Journal:  Chem Rev       Date:  2007-08       Impact factor: 60.622

5.  Fast events in protein folding: relaxation dynamics and structure of the I form of apomyoglobin.

Authors:  R Gilmanshin; S Williams; R H Callender; W H Woodruff; R B Dyer
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

6.  Rate constants for the reactions of OH radicals with the enzyme proteins as determined by the p-nitrosodimethylaniline method.

Authors:  T Masuda; S Nakano; M Kondo
Journal:  J Radiat Res       Date:  1973-12       Impact factor: 2.724

7.  Sulfate radical anion as a new reagent for fast photochemical oxidation of proteins.

Authors:  Brian C Gau; Hao Chen; Yun Zhang; Michael L Gross
Journal:  Anal Chem       Date:  2010-09-15       Impact factor: 6.986

8.  Fast photochemical oxidation of proteins for comparing structures of protein-ligand complexes: the calmodulin-peptide model system.

Authors:  Hao Zhang; Brian C Gau; Lisa M Jones; Ilan Vidavsky; Michael L Gross
Journal:  Anal Chem       Date:  2010-12-13       Impact factor: 6.986

9.  Fast photochemical oxidation of proteins for epitope mapping.

Authors:  Lisa M Jones; Justin B Sperry; James A Carroll; Michael L Gross
Journal:  Anal Chem       Date:  2011-09-21       Impact factor: 6.986

10.  Radiolytic modification of acidic amino acid residues in peptides: probes for examining protein-protein interactions.

Authors:  Guozhong Xu; Mark R Chance
Journal:  Anal Chem       Date:  2004-03-01       Impact factor: 6.986

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  24 in total

1.  A Fast Photochemical Oxidation of Proteins (FPOP) platform for free-radical reactions: the carbonate radical anion with peptides and proteins.

Authors:  Mengru Mira Zhang; Don L Rempel; Michael L Gross
Journal:  Free Radic Biol Med       Date:  2018-11-28       Impact factor: 7.376

Review 2.  Fast photochemical oxidation of proteins (FPOP): A powerful mass spectrometry-based structural proteomics tool.

Authors:  Danté T Johnson; Luciano H Di Stefano; Lisa M Jones
Journal:  J Biol Chem       Date:  2019-07-01       Impact factor: 5.157

3.  Incorporation of a Reporter Peptide in FPOP Compensates for Adventitious Scavengers and Permits Time-Dependent Measurements.

Authors:  Ben Niu; Brian C Mackness; Don L Rempel; Hao Zhang; Weidong Cui; C Robert Matthews; Jill A Zitzewitz; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2016-12-06       Impact factor: 3.109

4.  Protein Footprinting and X-ray Crystallography Reveal the Interaction of PD-L1 and a Macrocyclic Peptide.

Authors:  Ben Niu; Todd C Appleby; Ruth Wang; Mariya Morar; Johannes Voight; Armando G Villaseñor; Sheila Clancy; Sarah Wise; Jean-Philippe Belzile; Giuseppe Papalia; Melanie Wong; Katherine M Brendza; Latesh Lad; Michael L Gross
Journal:  Biochemistry       Date:  2019-12-31       Impact factor: 3.162

5.  Compensated Hydroxyl Radical Protein Footprinting Measures Buffer and Excipient Effects on Conformation and Aggregation in an Adalimumab Biosimilar.

Authors:  Sandeep K Misra; Ron Orlando; Scot R Weinberger; Joshua S Sharp
Journal:  AAPS J       Date:  2019-07-11       Impact factor: 4.009

6.  Variation in FPOP Measurements Is Primarily Caused by Poor Peptide Signal Intensity.

Authors:  Niloofar Abolhasani Khaje; Charles K Mobley; Sandeep K Misra; Lindsey Miller; Zixuan Li; Evgeny Nudler; Joshua S Sharp
Journal:  J Am Soc Mass Spectrom       Date:  2018-06-25       Impact factor: 3.109

7.  Modifications generated by fast photochemical oxidation of proteins reflect the native conformations of proteins.

Authors:  Emily E Chea; Lisa M Jones
Journal:  Protein Sci       Date:  2018-04-14       Impact factor: 6.725

8.  Laser-Initiated Radical Trifluoromethylation of Peptides and Proteins: Application to Mass-Spectrometry-Based Protein Footprinting.

Authors:  Ming Cheng; Bojie Zhang; Weidong Cui; Michael L Gross
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-05       Impact factor: 15.336

9.  Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane.

Authors:  Que N Van; Cesar A López; Marco Tonelli; Troy Taylor; Ben Niu; Christopher B Stanley; Debsindhu Bhowmik; Timothy H Tran; Peter H Frank; Simon Messing; Patrick Alexander; Daniel Scott; Xiaoying Ye; Matt Drew; Oleg Chertov; Mathias Lösche; Arvind Ramanathan; Michael L Gross; Nicolas W Hengartner; William M Westler; John L Markley; Dhirendra K Simanshu; Dwight V Nissley; William K Gillette; Dominic Esposito; Frank McCormick; S Gnanakaran; Frank Heinrich; Andrew G Stephen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

10.  Probing the Time Scale of FPOP (Fast Photochemical Oxidation of Proteins): Radical Reactions Extend Over Tens of Milliseconds.

Authors:  Siavash Vahidi; Lars Konermann
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-11       Impact factor: 3.109

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