Literature DB >> 25708632

Experimental characterization of adsorbed protein orientation, conformation, and bioactivity.

Aby A Thyparambil1, Yang Wei1, Robert A Latour1.   

Abstract

Protein adsorption on material surfaces is a common phenomenon that is of critical importance in many biotechnological applications. The structure and function of adsorbed proteins are tightly interrelated and play a key role in the communication and interaction of the adsorbed proteins with the surrounding environment. Because the bioactive state of a protein on a surface is a function of the orientation, conformation, and accessibility of its bioactive site(s), the isolated determination of just one or two of these factors will typically not be sufficient to understand the structure-function relationships of the adsorbed layer. Rather a combination of methods is needed to address each of these factors in a synergistic manner to provide a complementary dataset to characterize and understand the bioactive state of adsorbed protein. Over the past several years, the authors have focused on the development of such a set of complementary methods to address this need. These methods include adsorbed-state circular dichroism spectropolarimetry to determine adsorption-induced changes in protein secondary structure, amino-acid labeling/mass spectrometry to assess adsorbed protein orientation and tertiary structure by monitoring adsorption-induced changes in residue solvent accessibility, and bioactivity assays to assess adsorption-induced changes in protein bioactivity. In this paper, the authors describe the methods that they have developed and/or adapted for each of these assays. The authors then provide an example of their application to characterize how adsorption-induced changes in protein structure influence the enzymatic activity of hen egg-white lysozyme on fused silica glass, high density polyethylene, and poly(methyl-methacrylate) as a set of model systems.

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Year:  2015        PMID: 25708632      PMCID: PMC4312349          DOI: 10.1116/1.4906485

Source DB:  PubMed          Journal:  Biointerphases        ISSN: 1559-4106            Impact factor:   2.456


  64 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Authors:  Xuguang Yan; Jeffrey Watson; P Shing Ho; Max L Deinzer
Journal:  Mol Cell Proteomics       Date:  2003-11-16       Impact factor: 5.911

4.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  Using circular dichroism spectra to estimate protein secondary structure.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  Determination of the orientation of adsorbed cytochrome C on carboxyalkanethiol self-assembled monolayers by in situ differential modification.

Authors:  Jishou Xu; Edmond F Bowden
Journal:  J Am Chem Soc       Date:  2006-05-31       Impact factor: 15.419

7.  Assessing the influence of adsorbed-state conformation on the bioactivity of adsorbed enzyme layers.

Authors:  Kenan P Fears; Robert A Latour
Journal:  Langmuir       Date:  2009-12-15       Impact factor: 3.882

8.  Fluorescence probe techniques to monitor protein adsorption-induced conformation changes on biodegradable polymers.

Authors:  Johan Benesch; Graham Hungerford; Klaus Suhling; Carolyn Tregidgo; João F Mano; Rui L Reis
Journal:  J Colloid Interface Sci       Date:  2007-04-27       Impact factor: 8.128

9.  Effect of surface concentration on secondary and tertiary conformational changes of lysozyme adsorbed on silica nanoparticles.

Authors:  Xiaoyu Wu; Ganesan Narsimhan
Journal:  Biochim Biophys Acta       Date:  2008-06-20

10.  SFG analysis of surface bound proteins: a route towards structure determination.

Authors:  Tobias Weidner; David G Castner
Journal:  Phys Chem Chem Phys       Date:  2013-08-14       Impact factor: 3.676

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  14 in total

1.  Parameterization of an interfacial force field for accurate representation of peptide adsorption free energy on high-density polyethylene.

Authors:  Tigran M Abramyan; James A Snyder; Jeremy A Yancey; Aby A Thyparambil; Yang Wei; Steven J Stuart; Robert A Latour
Journal:  Biointerphases       Date:  2015-06-27       Impact factor: 2.456

2.  Application of advanced sampling and analysis methods to predict the structure of adsorbed protein on a material surface.

Authors:  Tigran M Abramyan; David L Hyde-Volpe; Steven J Stuart; Robert A Latour
Journal:  Biointerphases       Date:  2017-05-17       Impact factor: 2.456

3.  The effects of tether placement on antibody stability on surfaces.

Authors:  Rebecca W Grawe; Thomas A Knotts
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

4.  Differential orientation and conformation of surface-bound keratinocyte growth factor on (hydroxyethyl)methacrylate, (hydroxyethyl)methacrylate/methyl methacrylate, and (hydroxyethyl)methacrylate/methacrylic acid hydrogel copolymers.

Authors:  Shohini Sen-Britain; Wesley L Hicks; Robert Hard; Joseph A Gardella
Journal:  Biointerphases       Date:  2018-10-25       Impact factor: 2.456

Review 5.  Polarimetric Measurements of Surface Chirality Based on Linear and Nonlinear Light Scattering.

Authors:  Ankur Gogoi; Surajit Konwer; Guan-Yu Zhuo
Journal:  Front Chem       Date:  2021-02-10       Impact factor: 5.221

6.  Correlation between Tribological Properties and the Quantified Structural Changes of Lysozyme on Poly (2-hydroxyethyl methacrylate) Contact Lens.

Authors:  You-Cheng Chang; Chen-Ying Su; Chia-Hua Chang; Hsu-Wei Fang; Yang Wei
Journal:  Polymers (Basel)       Date:  2020-07-23       Impact factor: 4.329

7.  Quantify the Protein-Protein Interaction Effects on Adsorption Related Lubricating Behaviors of α-Amylase on a Glass Surface.

Authors:  Nareshkumar Baskaran; You-Cheng Chang; Chia-Hua Chang; Shun-Kai Hung; Chuan-Tse Kao; Yang Wei
Journal:  Polymers (Basel)       Date:  2020-07-25       Impact factor: 4.329

Review 8.  Fundamental Principles of the Thermodynamics and Kinetics of Protein Adsorption to Material Surfaces.

Authors:  Robert A Latour
Journal:  Colloids Surf B Biointerfaces       Date:  2020-04-01       Impact factor: 5.268

9.  PCDDB: new developments at the Protein Circular Dichroism Data Bank.

Authors:  Lee Whitmore; Andrew John Miles; Lazaros Mavridis; Robert W Janes; B A Wallace
Journal:  Nucleic Acids Res       Date:  2016-09-08       Impact factor: 16.971

10.  Fibronectin Adsorption on Electrospun Synthetic Vascular Grafts Attracts Endothelial Progenitor Cells and Promotes Endothelialization in Dynamic In Vitro Culture.

Authors:  Ruben Daum; Dmitri Visser; Constanze Wild; Larysa Kutuzova; Maria Schneider; Günter Lorenz; Martin Weiss; Svenja Hinderer; Ulrich A Stock; Martina Seifert; Katja Schenke-Layland
Journal:  Cells       Date:  2020-03-23       Impact factor: 6.600

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