Literature DB >> 25706507

A Complete Color Normalization Approach to Histopathology Images Using Color Cues Computed From Saturation-Weighted Statistics.

Xingyu Li, Konstantinos N Plataniotis.   

Abstract

GOAL: In digital histopathology, tasks of segmentation and disease diagnosis are achieved by quantitative analysis of image content. However, color variation in image samples makes it challenging to produce reliable results. This paper introduces a complete normalization scheme to address the problem of color variation in histopathology images jointly caused by inconsistent biopsy staining and nonstandard imaging condition. Method : Different from existing normalization methods that either address partial cause of color variation or lump them together, our method identifies causes of color variation based on a microscopic imaging model and addresses inconsistency in biopsy imaging and staining by an illuminant normalization module and a spectral normalization module, respectively. In evaluation, we use two public datasets that are representative of histopathology images commonly received in clinics to examine the proposed method from the aspects of robustness to system settings, performance consistency against achromatic pixels, and normalization effectiveness in terms of histological information preservation.
RESULTS: As the saturation-weighted statistics proposed in this study generates stable and reliable color cues for stain normalization, our scheme is robust to system parameters and insensitive to image content and achromatic colors.
CONCLUSION: Extensive experimentation suggests that our approach outperforms state-of-the-art normalization methods as the proposed method is the only approach that succeeds to preserve histological information after normalization. SIGNIFICANCE: The proposed color normalization solution would be useful to mitigate effects of color variation in pathology images on subsequent quantitative analysis.

Entities:  

Mesh:

Year:  2015        PMID: 25706507     DOI: 10.1109/TBME.2015.2405791

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  19 in total

1.  Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images.

Authors:  Luong Nguyen; Akif Burak Tosun; Jeffrey L Fine; Adrian V Lee; D Lansing Taylor; S Chakra Chennubhotla
Journal:  IEEE Trans Med Imaging       Date:  2017-03-16       Impact factor: 10.048

2.  Fast hybrid optomechanical scanning photoacoustic remote sensing microscopy for virtual histology.

Authors:  Brendon S Restall; Brendyn D Cikaluk; Matthew T Martell; Nathaniel J M Haven; Rohan Mittal; Sveta Silverman; Lashan Peiris; Jean Deschenes; Benjamin A Adam; Adam Kinnaird; Roger J Zemp
Journal:  Biomed Opt Express       Date:  2021-12-02       Impact factor: 3.732

3.  Towards Population-Based Histologic Stain Normalization of Glioblastoma.

Authors:  Caleb M Grenko; Angela N Viaene; MacLean P Nasrallah; Michael D Feldman; Hamed Akbari; Spyridon Bakas
Journal:  Brainlesion       Date:  2020-05-19

4.  Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation.

Authors:  Najah Alsubaie; Nicholas Trahearn; Shan E Ahmed Raza; David Snead; Nasir M Rajpoot
Journal:  PLoS One       Date:  2017-01-11       Impact factor: 3.240

5.  Image processing in digital pathology: an opportunity to solve inter-batch variability of immunohistochemical staining.

Authors:  Yves-Rémi Van Eycke; Justine Allard; Isabelle Salmon; Olivier Debeir; Christine Decaestecker
Journal:  Sci Rep       Date:  2017-02-21       Impact factor: 4.379

6.  Analysis of Spatial Distribution and Prognostic Value of Different Pan Cytokeratin Immunostaining Intensities in Breast Tumor Tissue Sections.

Authors:  Velicko Vranes; Tijana Vujasinović; Nemanja Rajković; Ksenija Kanjer; Nebojša T Milošević; Marko Radulovic
Journal:  Int J Mol Sci       Date:  2020-06-22       Impact factor: 5.923

7.  Novel chromaticity similarity based color texture descriptor for digital pathology image analysis.

Authors:  Xingyu Li; Konstantinos N Plataniotis
Journal:  PLoS One       Date:  2018-11-12       Impact factor: 3.240

8.  Recurrence analysis on prostate cancer patients with Gleason score 7 using integrated histopathology whole-slide images and genomic data through deep neural networks.

Authors:  Jian Ren; Kubra Karagoz; Michael L Gatza; Eric A Singer; Evita Sadimin; David J Foran; Xin Qi
Journal:  J Med Imaging (Bellingham)       Date:  2018-11-15

9.  Unsupervised Domain Adaptation for Classification of Histopathology Whole-Slide Images.

Authors:  Jian Ren; Ilker Hacihaliloglu; Eric A Singer; David J Foran; Xin Qi
Journal:  Front Bioeng Biotechnol       Date:  2019-05-15

10.  A High-Performance System for Robust Stain Normalization of Whole-Slide Images in Histopathology.

Authors:  Andreea Anghel; Milos Stanisavljevic; Sonali Andani; Nikolaos Papandreou; Jan Hendrick Rüschoff; Peter Wild; Maria Gabrani; Haralampos Pozidis
Journal:  Front Med (Lausanne)       Date:  2019-09-30
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