Literature DB >> 25705514

Crystal structure of 3-(4-chloro-phen-oxy)-4-(2-nitro-phen-yl)azetidin-2-one with an unknown solvate.

Sevim Türktekin Çelikesir1, Mehmet Akkurt1, Aliasghar Jarrahpour2, Habib Allah Shafie2, Ömer Çelik3.   

Abstract

In the title compound, C15H11ClN2O4, the central β-lactam ring is approximately planar [maximum deviation = 0.044 (2) Å for the N atom from the mean plane] and subtends dihedral angles of 61.17 (11) and 40.21 (12) °, respectively, with the nitro and chloro-benzene rings. Both substituents lie to the same side of the β-lactam core. In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into C(4) chains propagating in [010]. The chains are cross-linked by C-H⋯O and weak C-H⋯π inter-actions, generating a three-dimensional network. The solvent mol-ecules were found to be highly disordered and their contribution to the scattering was removed with the SQUEEZE procedure in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155], which indicated a solvent cavity of volume 318 Å(3) containing approximately 114 electrons. These solvent mol-ecules are not considered in the given chemical formula and other crystal data.

Entities:  

Keywords:  C(4) chain; C—H⋯π inter­actions; N-unsubstituted 2-azetidinone; crystal structure; hydrogen bonding; hydrogen bonds; β-lactam ring

Year:  2015        PMID: 25705514      PMCID: PMC4331907          DOI: 10.1107/S2056989014025845

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the application of N-unsubstituted 2-azetidinones in the synthesis of β-lactam anti­biotics, see: Cossio et al. (1987 ▸); Jarrahpour & Zarei (2007 ▸, 2008 ▸). For a related structure with a β-lactam ring, see: Butcher et al. (2011 ▸).

Experimental

Crystal data

C15H11ClN2O4 M = 318.71 Monoclinic, a = 16.9505 (4) Å b = 4.6517 (1) Å c = 21.7167 (6) Å β = 99.757 (1)° V = 1687.56 (7) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.30 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer 16293 measured reflections 4358 independent reflections 3158 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.135 S = 1.04 4358 reflections 199 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014025845/hb7322sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014025845/hb7322Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014025845/hb7322Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014025845/hb7322fig1.tif View of the title compound with displacement ellipsoids for non-H atoms drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989014025845/hb7322fig2.tif View of the hydrogen bonding of the title compound along b axis. Only H atoms involved in H bonding are shown. CCDC reference: 1036035 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H11ClN2O4F(000) = 656
Mr = 318.71Dx = 1.254 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6230 reflections
a = 16.9505 (4) Åθ = 2.4–28.7°
b = 4.6517 (1) ŵ = 0.24 mm1
c = 21.7167 (6) ÅT = 296 K
β = 99.757 (1)°Prism, colourless
V = 1687.56 (7) Å30.30 × 0.20 × 0.15 mm
Z = 4
Bruker APEXII CCD diffractometer3158 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.022
Graphite monochromatorθmax = 28.8°, θmin = 1.7°
φ and ω scansh = −21→22
16293 measured reflectionsk = −6→6
4358 independent reflectionsl = −28→29
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.135w = 1/[σ2(Fo2) + (0.0607P)2 + 0.3362P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4358 reflectionsΔρmax = 0.35 e Å3
199 parametersΔρmin = −0.23 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.77735 (3)0.02466 (16)0.86934 (3)0.0896 (2)
O10.34325 (8)0.4694 (3)0.80529 (6)0.0684 (5)
O20.49880 (7)0.6846 (3)0.60857 (6)0.0615 (5)
O30.53550 (8)0.3225 (3)0.55969 (6)0.0686 (5)
O40.46717 (6)0.2832 (2)0.71337 (5)0.0437 (3)
N10.30955 (8)0.6612 (4)0.70465 (6)0.0523 (5)
N20.48444 (8)0.4599 (3)0.58069 (6)0.0440 (4)
C10.35588 (9)0.5438 (4)0.75408 (7)0.0462 (5)
C20.42874 (8)0.5444 (3)0.72098 (7)0.0374 (4)
C30.36874 (9)0.6469 (4)0.66256 (7)0.0399 (5)
C40.34857 (9)0.4352 (3)0.60981 (7)0.0377 (4)
C50.27331 (10)0.3099 (4)0.59775 (8)0.0503 (5)
C60.25251 (11)0.1159 (5)0.54958 (9)0.0632 (7)
C70.30631 (13)0.0396 (4)0.51201 (9)0.0625 (7)
C80.38224 (11)0.1547 (4)0.52289 (7)0.0509 (6)
C90.40248 (9)0.3484 (3)0.57097 (7)0.0387 (5)
C100.54003 (8)0.2358 (3)0.75211 (7)0.0387 (4)
C110.55796 (12)0.3387 (5)0.81220 (8)0.0661 (7)
C120.63188 (13)0.2760 (6)0.84797 (8)0.0733 (8)
C130.68458 (10)0.1055 (5)0.82418 (8)0.0559 (6)
C140.66690 (10)0.0022 (4)0.76469 (9)0.0555 (6)
C150.59401 (9)0.0697 (4)0.72819 (8)0.0470 (5)
H10.261200.724200.699200.0630*
H20.467000.695500.737100.0450*
H30.382300.837200.648000.0480*
H50.235800.357700.622800.0600*
H60.201400.036400.542600.0760*
H70.29160−0.089200.479300.0750*
H80.419500.102200.498000.0610*
H110.520900.449300.828700.0790*
H120.645300.350500.888100.0880*
H140.70350−0.112800.748700.0670*
H150.581900.001900.687400.0560*
U11U22U33U12U13U23
Cl10.0624 (3)0.1234 (6)0.0723 (3)0.0190 (3)−0.0193 (3)0.0066 (3)
O10.0550 (7)0.1050 (12)0.0494 (7)−0.0149 (7)0.0209 (6)0.0013 (7)
O20.0577 (7)0.0584 (9)0.0733 (8)−0.0162 (6)0.0251 (6)−0.0204 (7)
O30.0539 (7)0.0755 (10)0.0824 (9)0.0055 (7)0.0291 (7)−0.0164 (8)
O40.0356 (5)0.0379 (7)0.0547 (6)0.0017 (5)−0.0002 (4)−0.0061 (5)
N10.0371 (7)0.0678 (11)0.0547 (8)0.0115 (7)0.0153 (6)−0.0048 (7)
N20.0467 (7)0.0474 (9)0.0407 (6)−0.0008 (6)0.0152 (5)0.0008 (6)
C10.0378 (8)0.0556 (11)0.0471 (8)−0.0065 (7)0.0130 (6)−0.0086 (8)
C20.0338 (7)0.0349 (9)0.0448 (7)−0.0034 (6)0.0107 (6)−0.0054 (6)
C30.0388 (7)0.0364 (9)0.0468 (8)0.0046 (6)0.0139 (6)0.0006 (7)
C40.0385 (7)0.0336 (8)0.0408 (7)0.0029 (6)0.0058 (6)0.0060 (6)
C50.0383 (8)0.0536 (11)0.0582 (9)0.0017 (7)0.0057 (7)0.0038 (8)
C60.0496 (10)0.0607 (13)0.0722 (12)−0.0118 (9)−0.0102 (9)0.0016 (10)
C70.0732 (13)0.0551 (12)0.0522 (9)−0.0058 (10)−0.0093 (9)−0.0082 (9)
C80.0623 (10)0.0483 (11)0.0408 (8)0.0036 (9)0.0051 (7)−0.0030 (7)
C90.0431 (8)0.0354 (9)0.0375 (7)0.0016 (7)0.0065 (6)0.0032 (6)
C100.0348 (7)0.0390 (9)0.0424 (7)−0.0039 (6)0.0069 (6)0.0008 (6)
C110.0613 (11)0.0918 (17)0.0446 (9)0.0206 (11)0.0075 (8)−0.0113 (10)
C120.0692 (12)0.1051 (19)0.0405 (9)0.0120 (12)−0.0056 (8)−0.0085 (10)
C130.0451 (9)0.0680 (13)0.0511 (9)0.0025 (9)−0.0021 (7)0.0074 (9)
C140.0402 (8)0.0628 (13)0.0621 (10)0.0075 (8)0.0050 (7)−0.0067 (9)
C150.0396 (8)0.0516 (11)0.0481 (8)−0.0014 (7)0.0030 (6)−0.0101 (8)
Cl1—C131.7474 (18)C8—C91.378 (2)
O1—C11.218 (2)C10—C151.366 (2)
O2—N21.2118 (19)C10—C111.375 (2)
O3—N21.2245 (19)C11—C121.389 (3)
O4—C21.4016 (17)C12—C131.360 (3)
O4—C101.3891 (18)C13—C141.363 (3)
N1—C11.335 (2)C14—C151.386 (2)
N1—C31.469 (2)C2—H20.9800
N2—C91.464 (2)C3—H30.9800
C1—C21.531 (2)C5—H50.9300
N1—H10.8600C6—H60.9300
C2—C31.560 (2)C7—H70.9300
C3—C41.505 (2)C8—H80.9300
C4—C51.387 (2)C11—H110.9300
C4—C91.404 (2)C12—H120.9300
C5—C61.381 (3)C14—H140.9300
C6—C71.370 (3)C15—H150.9300
C7—C81.377 (3)
C2—O4—C10116.71 (11)C10—C11—C12119.42 (18)
C1—N1—C396.38 (13)C11—C12—C13119.89 (18)
O2—N2—O3122.79 (14)Cl1—C13—C14119.24 (15)
O2—N2—C9118.87 (13)Cl1—C13—C12119.92 (14)
O3—N2—C9118.34 (13)C12—C13—C14120.82 (17)
O1—C1—N1132.86 (15)C13—C14—C15119.57 (17)
O1—C1—C2135.24 (15)C10—C15—C14120.02 (16)
N1—C1—C291.90 (12)O4—C2—H2112.00
C1—N1—H1132.00C1—C2—H2112.00
C3—N1—H1132.00C3—C2—H2112.00
O4—C2—C1118.81 (12)N1—C3—H3112.00
O4—C2—C3114.90 (12)C2—C3—H3112.00
C1—C2—C385.17 (11)C4—C3—H3112.00
N1—C3—C285.85 (11)C4—C5—H5119.00
C2—C3—C4116.85 (14)C6—C5—H5119.00
N1—C3—C4114.34 (14)C5—C6—H6120.00
C3—C4—C9123.94 (14)C7—C6—H6120.00
C3—C4—C5120.12 (14)C6—C7—H7120.00
C5—C4—C9115.94 (14)C8—C7—H7120.00
C4—C5—C6121.75 (16)C7—C8—H8120.00
C5—C6—C7120.68 (18)C9—C8—H8120.00
C6—C7—C8119.63 (18)C10—C11—H11120.00
C7—C8—C9119.33 (16)C12—C11—H11120.00
N2—C9—C8116.69 (14)C11—C12—H12120.00
C4—C9—C8122.66 (15)C13—C12—H12120.00
N2—C9—C4120.65 (13)C13—C14—H14120.00
C11—C10—C15120.23 (15)C15—C14—H14120.00
O4—C10—C11123.40 (14)C10—C15—H15120.00
O4—C10—C15116.34 (13)C14—C15—H15120.00
C10—O4—C2—C3156.31 (12)C2—C3—C4—C9−70.06 (19)
C2—O4—C10—C1132.5 (2)C3—C4—C9—N21.0 (2)
C2—O4—C10—C15−149.62 (14)C3—C4—C9—C8−179.81 (15)
C10—O4—C2—C1−105.11 (15)C3—C4—C5—C6179.68 (17)
C3—N1—C1—C26.71 (14)C9—C4—C5—C6−1.2 (2)
C3—N1—C1—O1−173.8 (2)C5—C4—C9—N2−178.08 (14)
C1—N1—C3—C2−6.60 (14)C5—C4—C9—C81.1 (2)
C1—N1—C3—C4111.06 (16)C4—C5—C6—C70.3 (3)
O3—N2—C9—C4158.62 (14)C5—C6—C7—C80.8 (3)
O2—N2—C9—C8158.71 (15)C6—C7—C8—C9−0.9 (3)
O3—N2—C9—C8−20.7 (2)C7—C8—C9—C4−0.1 (2)
O2—N2—C9—C4−22.0 (2)C7—C8—C9—N2179.17 (15)
N1—C1—C2—C3−6.30 (14)O4—C10—C11—C12178.78 (18)
N1—C1—C2—O4−122.13 (15)C15—C10—C11—C121.0 (3)
O1—C1—C2—O458.4 (3)O4—C10—C15—C14−177.37 (15)
O1—C1—C2—C3174.2 (2)C11—C10—C15—C140.6 (3)
O4—C2—C3—N1125.34 (13)C10—C11—C12—C13−2.4 (3)
C1—C2—C3—N15.73 (12)C11—C12—C13—Cl1−179.60 (18)
C1—C2—C3—C4−109.51 (14)C11—C12—C13—C142.2 (4)
O4—C2—C3—C410.09 (19)Cl1—C13—C14—C15−178.84 (15)
N1—C3—C4—C9−168.11 (14)C12—C13—C14—C15−0.6 (3)
C2—C3—C4—C5108.95 (17)C13—C14—C15—C10−0.8 (3)
N1—C3—C4—C510.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.092.936 (2)166
C8—H8···O3ii0.932.533.307 (2)142
C15—H15···O2iii0.932.513.338 (2)149
C3—H3···Cg2iv0.982.703.5118 (19)141
Table 1

Hydrogen-bond geometry (, )

Cg2 is the centroid of the nitrobenzene ring (C4C9).

DHA DHHA D A DHA
N1H1O1i 0.862.092.936(2)166
C8H8O3ii 0.932.533.307(2)142
C15H15O2iii 0.932.513.338(2)149
C3H3Cg2iv 0.982.703.5118(19)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of novel N-(4-ethoxyphenyl) azetidin-2-ones and their oxidative N-deprotection by ceric ammonium nitrate.

Authors:  Aliasghar Jarrahpour; Maaroof Zarei
Journal:  Molecules       Date:  2007-10-25       Impact factor: 4.411

3.  3-(4-Chloro-phen-oxy)-1-(4-meth-oxy-phen-yl)-4-(4-nitro-phen-yl)azetidin-2-one.

Authors:  Ray J Butcher; Mehmet Akkurt; Aliasghar Jarrahpour; Seid Ali Torabi Badrabady
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.