Literature DB >> 25705512

Crystal structure of (Z)-1-phenyl-3-styryl-undeca-2-en-4,10-diyn-1-ol.

Rakesh Ganguly1, Philip Wai Hong Chan2.   

Abstract

The mol-ecule of the title compound, C25H24O, obtained by acid-catalysed 1,3-migration of an alcohol group, is T-shaped. The planes of the two phenyl rings are inclined to one another by 81.9 (2)°. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, forming chains along [001].

Entities:  

Keywords:  1,3-migration; alcohol group; catalytic cyclization; crystal structure; styrylundeca­nene.

Year:  2015        PMID: 25705512      PMCID: PMC4331854          DOI: 10.1107/S205698901402742X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the 1,3-migration of an alcoholic group adjacent to a vinyl group in the presence of a Lewis acid, see: Piotti & Alper (1997 ▸); Poloukhtine & Popik (2005 ▸). For catalytic cyclization of alcohols containing a number of unsaturated groups, see: Teo et al. (2014 ▸).

Experimental

Crystal data

C25H24O M = 340.44 Trigonal, a = 17.867 (2) Å c = 5.3290 (6) Å V = 1473.3 (4) Å3 Z = 3 Mo Kα radiation μ = 0.07 mm−1 T = 103 K 0.34 × 0.04 × 0.04 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.74, T max = 1.00 14182 measured reflections 4846 independent reflections 2945 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.129 S = 0.98 4846 reflections 235 parameters 1 restraint H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL2014, PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S205698901402742X/su5038sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901402742X/su5038Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901402742X/su5038Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901402742X/su5038fig1.tif A view of the mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. c . DOI: 10.1107/S205698901402742X/su5038fig2.tif A partial view along the c axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines (see Table 1 for details). Click here for additional data file. . DOI: 10.1107/S205698901402742X/su5038fig3.tif Reaction scheme. CCDC reference: 1009363 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H24ODx = 1.151 Mg m3
Mr = 340.44Mo Kα radiation, λ = 0.71073 Å
Trigonal, P32Cell parameters from 1285 reflections
a = 17.867 (2) Åθ = 2.3–20.5°
c = 5.3290 (6) ŵ = 0.07 mm1
V = 1473.3 (4) Å3T = 103 K
Z = 3Needle, colourless
F(000) = 5460.34 × 0.04 × 0.04 mm
Bruker Kappa APEXII CCD diffractometer4846 independent reflections
Radiation source: fine-focus sealed tube2945 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.078
ω and φ scanθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2013)h = −23→14
Tmin = 0.74, Tmax = 1.00k = −22→23
14182 measured reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0486P)2] where P = (Fo2 + 2Fc2)/3
4846 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.39 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.30859 (17)0.59437 (17)0.3483 (5)0.0251 (7)
H1A0.34630.63110.25210.038*
C10.3069 (3)0.5136 (2)0.3226 (7)0.0199 (9)
H10.30480.48980.49400.024*
C20.2281 (2)0.4484 (3)0.1774 (7)0.0197 (9)
C30.1897 (3)0.3614 (3)0.2407 (8)0.0281 (10)
H30.21050.34410.38010.034*
C40.1209 (3)0.2999 (3)0.1007 (9)0.0341 (12)
H40.09480.24070.14610.041*
C50.0899 (3)0.3235 (3)−0.1032 (9)0.0333 (11)
H50.04340.2809−0.19980.040*
C60.1275 (3)0.4099 (3)−0.1651 (8)0.0305 (11)
H60.10600.4269−0.30380.037*
C70.1962 (3)0.4721 (3)−0.0270 (8)0.0272 (10)
H70.22160.5313−0.07220.033*
C80.3878 (2)0.5282 (2)0.1948 (7)0.0196 (9)
H80.40500.56390.04970.024*
C90.4386 (2)0.4964 (2)0.2634 (7)0.0160 (8)
C100.5143 (2)0.5153 (2)0.1121 (7)0.0171 (8)
H100.52530.5510−0.03110.021*
C110.5691 (2)0.4869 (2)0.1575 (7)0.0171 (8)
H110.56080.45520.30820.021*
C120.6413 (2)0.5000 (2)−0.0039 (7)0.0173 (9)
C130.6850 (2)0.4550 (2)0.0458 (7)0.0184 (9)
H130.66920.41820.18820.022*
C140.7511 (3)0.4630 (3)−0.1091 (8)0.0220 (9)
H140.78050.4324−0.07180.026*
C150.7739 (3)0.5160 (3)−0.3182 (7)0.0245 (10)
H150.81840.5209−0.42640.029*
C160.7321 (2)0.5620 (3)−0.3704 (7)0.0231 (9)
H160.74820.5985−0.51340.028*
C170.6665 (3)0.5545 (3)−0.2137 (7)0.0204 (9)
H170.63850.5867−0.24920.024*
C180.4152 (2)0.4385 (3)0.4758 (8)0.0184 (8)
C190.3892 (2)0.3880 (2)0.6457 (7)0.0201 (9)
C200.3519 (3)0.3267 (3)0.8553 (8)0.0275 (10)
H20A0.30520.33360.93130.033*
H20B0.39730.34260.98440.033*
C210.3157 (3)0.2328 (3)0.7913 (8)0.0310 (11)
H21A0.28880.19770.94340.037*
H21B0.36370.22350.74050.037*
C220.2484 (3)0.2009 (3)0.5807 (8)0.0317 (11)
H22A0.20210.21370.62480.038*
H22B0.27600.23220.42370.038*
C230.2091 (3)0.1044 (3)0.5383 (9)0.0467 (14)
H23A0.17400.08810.38300.056*
H23B0.25620.09130.51270.056*
C240.1549 (3)0.0521 (3)0.7450 (9)0.0326 (11)
C250.1097 (3)0.0105 (3)0.9069 (10)0.0431 (13)
H250.0727−0.02351.03940.052*
U11U22U33U12U13U23
O10.0252 (16)0.0188 (15)0.0341 (17)0.0130 (13)0.0087 (14)0.0019 (13)
C10.024 (2)0.021 (2)0.021 (2)0.0159 (19)0.0076 (18)0.0067 (18)
C20.019 (2)0.021 (2)0.024 (2)0.0129 (18)0.0084 (18)0.0036 (18)
C30.022 (2)0.025 (2)0.036 (3)0.010 (2)0.002 (2)0.008 (2)
C40.026 (2)0.026 (3)0.047 (3)0.010 (2)0.003 (2)0.005 (2)
C50.024 (2)0.034 (3)0.038 (3)0.011 (2)−0.001 (2)−0.006 (2)
C60.031 (3)0.035 (3)0.030 (3)0.020 (2)−0.005 (2)−0.002 (2)
C70.028 (2)0.027 (2)0.029 (2)0.016 (2)0.003 (2)0.005 (2)
C80.020 (2)0.018 (2)0.021 (2)0.0093 (18)0.0026 (17)0.0022 (17)
C90.016 (2)0.0124 (19)0.019 (2)0.0071 (17)−0.0012 (17)−0.0009 (16)
C100.018 (2)0.0110 (19)0.019 (2)0.0051 (17)0.0007 (17)0.0011 (16)
C110.019 (2)0.015 (2)0.017 (2)0.0078 (18)0.0010 (17)0.0004 (16)
C120.014 (2)0.017 (2)0.020 (2)0.0066 (17)−0.0008 (17)−0.0034 (17)
C130.018 (2)0.019 (2)0.018 (2)0.0087 (18)0.0014 (17)0.0001 (17)
C140.021 (2)0.025 (2)0.024 (2)0.0145 (19)−0.0020 (18)−0.0037 (19)
C150.019 (2)0.031 (2)0.023 (2)0.012 (2)0.0035 (18)−0.0035 (19)
C160.021 (2)0.025 (2)0.022 (2)0.0096 (19)0.0035 (18)0.0020 (19)
C170.017 (2)0.021 (2)0.025 (2)0.0119 (18)−0.0006 (18)0.0014 (18)
C180.015 (2)0.020 (2)0.021 (2)0.0094 (17)−0.0002 (17)−0.0042 (18)
C190.017 (2)0.020 (2)0.021 (2)0.0073 (18)0.0002 (18)0.0011 (18)
C200.031 (3)0.024 (2)0.020 (2)0.008 (2)−0.001 (2)0.0045 (19)
C210.033 (3)0.026 (2)0.027 (2)0.010 (2)0.002 (2)0.002 (2)
C220.032 (3)0.024 (2)0.029 (3)0.006 (2)0.003 (2)0.003 (2)
C230.055 (3)0.028 (3)0.039 (3)0.007 (2)0.006 (3)−0.002 (2)
C240.033 (3)0.019 (2)0.043 (3)0.010 (2)−0.004 (2)−0.003 (2)
C250.037 (3)0.029 (3)0.054 (4)0.009 (2)0.001 (3)0.006 (3)
O1—C11.435 (4)C13—C141.388 (5)
O1—H1A0.8400C13—H130.9500
C1—C81.498 (5)C14—C151.385 (6)
C1—C21.516 (6)C14—H140.9500
C1—H11.0000C15—C161.388 (6)
C2—C31.390 (5)C15—H150.9500
C2—C71.390 (5)C16—C171.390 (5)
C3—C41.387 (6)C16—H160.9500
C3—H30.9500C17—H170.9500
C4—C51.378 (6)C18—C191.197 (5)
C4—H40.9500C19—C201.470 (5)
C5—C61.381 (6)C20—C211.504 (6)
C5—H50.9500C20—H20A0.9900
C6—C71.385 (6)C20—H20B0.9900
C6—H60.9500C21—C221.531 (6)
C7—H70.9500C21—H21A0.9900
C8—C91.341 (5)C21—H21B0.9900
C8—H80.9500C22—C231.519 (6)
C9—C181.446 (5)C22—H22A0.9900
C9—C101.461 (5)C22—H22B0.9900
C10—C111.332 (5)C23—C241.456 (7)
C10—H100.9500C23—H23A0.9900
C11—C121.467 (5)C23—H23B0.9900
C11—H110.9500C24—C251.161 (6)
C12—C131.399 (5)C25—H250.9500
C12—C171.401 (5)
C1—O1—H1A109.5C12—C13—H13119.4
O1—C1—C8109.5 (3)C15—C14—C13119.5 (4)
O1—C1—C2111.5 (3)C15—C14—H14120.2
C8—C1—C2110.3 (3)C13—C14—H14120.2
O1—C1—H1108.5C14—C15—C16120.3 (4)
C8—C1—H1108.5C14—C15—H15119.9
C2—C1—H1108.5C16—C15—H15119.9
C3—C2—C7118.8 (4)C15—C16—C17120.1 (4)
C3—C2—C1119.0 (4)C15—C16—H16120.0
C7—C2—C1122.0 (4)C17—C16—H16120.0
C2—C3—C4120.2 (4)C16—C17—C12120.6 (4)
C2—C3—H3119.9C16—C17—H17119.7
C4—C3—H3119.9C12—C17—H17119.7
C5—C4—C3120.9 (4)C19—C18—C9174.8 (4)
C5—C4—H4119.5C18—C19—C20176.0 (4)
C3—C4—H4119.5C19—C20—C21116.2 (4)
C4—C5—C6119.0 (4)C19—C20—H20A108.2
C4—C5—H5120.5C21—C20—H20A108.2
C6—C5—H5120.5C19—C20—H20B108.2
C5—C6—C7120.7 (4)C21—C20—H20B108.2
C5—C6—H6119.6H20A—C20—H20B107.4
C7—C6—H6119.6C20—C21—C22113.6 (4)
C6—C7—C2120.4 (4)C20—C21—H21A108.8
C6—C7—H7119.8C22—C21—H21A108.8
C2—C7—H7119.8C20—C21—H21B108.8
C9—C8—C1126.9 (3)C22—C21—H21B108.8
C9—C8—H8116.5H21A—C21—H21B107.7
C1—C8—H8116.5C23—C22—C21111.3 (4)
C8—C9—C18120.1 (3)C23—C22—H22A109.4
C8—C9—C10119.7 (3)C21—C22—H22A109.4
C18—C9—C10120.0 (3)C23—C22—H22B109.4
C11—C10—C9125.7 (4)C21—C22—H22B109.4
C11—C10—H10117.1H22A—C22—H22B108.0
C9—C10—H10117.1C24—C23—C22113.4 (4)
C10—C11—C12125.9 (4)C24—C23—H23A108.9
C10—C11—H11117.0C22—C23—H23A108.9
C12—C11—H11117.0C24—C23—H23B108.9
C13—C12—C17118.2 (3)C22—C23—H23B108.9
C13—C12—C11119.7 (4)H23A—C23—H23B107.7
C17—C12—C11122.1 (3)C25—C24—C23178.0 (5)
C14—C13—C12121.3 (4)C24—C25—H25180.0
C14—C13—H13119.4
O1—C1—C2—C3−145.9 (3)C8—C9—C10—C11−179.1 (4)
C8—C1—C2—C392.2 (4)C18—C9—C10—C11−3.5 (6)
O1—C1—C2—C738.1 (5)C9—C10—C11—C12175.0 (3)
C8—C1—C2—C7−83.8 (4)C10—C11—C12—C13−169.7 (4)
C7—C2—C3—C40.2 (6)C10—C11—C12—C178.1 (6)
C1—C2—C3—C4−175.9 (4)C17—C12—C13—C14−0.6 (5)
C2—C3—C4—C50.4 (6)C11—C12—C13—C14177.2 (3)
C3—C4—C5—C6−1.0 (7)C12—C13—C14—C15−0.6 (6)
C4—C5—C6—C71.0 (7)C13—C14—C15—C161.1 (6)
C5—C6—C7—C2−0.3 (7)C14—C15—C16—C17−0.5 (6)
C3—C2—C7—C6−0.2 (6)C15—C16—C17—C12−0.8 (6)
C1—C2—C7—C6175.8 (4)C13—C12—C17—C161.3 (5)
O1—C1—C8—C9133.8 (4)C11—C12—C17—C16−176.5 (4)
C2—C1—C8—C9−103.1 (4)C19—C20—C21—C22−54.5 (5)
C1—C8—C9—C182.6 (6)C20—C21—C22—C23−175.6 (4)
C1—C8—C9—C10178.2 (3)C21—C22—C23—C2468.5 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O1i0.841.832.652 (3)166
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1AO1i 0.841.832.652(3)166

Symmetry code: (i) .

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