| Literature DB >> 25705503 |
Youngeun Jeon1, Gihaeng Kang1, Seonghwa Cho1, Tae Ho Kim1.
Abstract
In the title compound, C14H15N3 (systematic name: 4-cyclo-propyl-6-methyl-N-phenyl-pyrimidin-2-amine), which is the anilino-pyrimidine fungicide cyprodinil, the dihedral angles between the planes of the central pyrimidine ring and the terminal phenyl ring and the mean plane of the cyclo-propane ring system are 14.52 (11) and 88.79 (10)°, respectively. In the crystal, weak π-π inter-actions [3.8551 (11) Å] connect the dimers into chains along the b-axis direction.Entities:
Keywords: crystal structure; cyprodinil; fungicide; hydrogen bonding; pyrimidin-2-amine; π–π interactions
Year: 2015 PMID: 25705503 PMCID: PMC4331914 DOI: 10.1107/S2056989014025742
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C14H15N3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8168 reflections |
| θ = 2.5–28.2° | |
| µ = 0.08 mm−1 | |
| β = 100.288 (2)° | Block, colourless |
| 0.45 × 0.22 × 0.18 mm | |
| Bruker APEXII CCD diffractometer | 2864 independent reflections |
| Radiation source: fine-focus sealed tube | 2463 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.3°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 18116 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2864 reflections | (Δ/σ)max < 0.001 |
| 155 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.64381 (12) | 0.1086 (3) | 0.81833 (9) | 0.0210 (3) | |
| H1N | 0.5882 | 0.0697 | 0.7834 | 0.025* | |
| N2 | 0.70730 (12) | 0.3584 (3) | 0.93020 (9) | 0.0201 (3) | |
| N3 | 0.53921 (12) | 0.4215 (3) | 0.84955 (9) | 0.0206 (3) | |
| C1 | 0.83033 (14) | 0.0059 (4) | 0.85440 (11) | 0.0246 (4) | |
| H1 | 0.8436 | 0.1437 | 0.8906 | 0.030* | |
| C2 | 0.90995 (15) | −0.1513 (4) | 0.84207 (12) | 0.0277 (4) | |
| H2 | 0.9778 | −0.1183 | 0.8700 | 0.033* | |
| C3 | 0.89324 (15) | −0.3555 (4) | 0.79011 (12) | 0.0256 (4) | |
| H3 | 0.9486 | −0.4621 | 0.7827 | 0.031* | |
| C4 | 0.79368 (15) | −0.4010 (4) | 0.74907 (11) | 0.0241 (4) | |
| H4 | 0.7808 | −0.5396 | 0.7131 | 0.029* | |
| C5 | 0.71331 (14) | −0.2457 (4) | 0.76022 (11) | 0.0208 (4) | |
| H5 | 0.6458 | −0.2787 | 0.7318 | 0.025* | |
| C6 | 0.73029 (14) | −0.0402 (4) | 0.81301 (10) | 0.0195 (4) | |
| C7 | 0.63140 (14) | 0.3035 (4) | 0.86853 (10) | 0.0189 (4) | |
| C8 | 0.69016 (14) | 0.5539 (4) | 0.97648 (10) | 0.0208 (4) | |
| C9 | 0.59859 (15) | 0.6871 (4) | 0.96202 (11) | 0.0233 (4) | |
| H9 | 0.5873 | 0.8251 | 0.9951 | 0.028* | |
| C10 | 0.52353 (14) | 0.6127 (4) | 0.89742 (11) | 0.0209 (4) | |
| C11 | 0.77222 (15) | 0.6184 (4) | 1.04550 (11) | 0.0246 (4) | |
| H11 | 0.7567 | 0.7622 | 1.0796 | 0.029* | |
| C12 | 0.83749 (15) | 0.4101 (4) | 1.08962 (12) | 0.0276 (4) | |
| H12A | 0.8585 | 0.4258 | 1.1488 | 0.033* | |
| H12B | 0.8239 | 0.2360 | 1.0698 | 0.033* | |
| C13 | 0.88371 (16) | 0.5880 (4) | 1.03804 (12) | 0.0300 (5) | |
| H13A | 0.8989 | 0.5239 | 0.9863 | 0.036* | |
| H13B | 0.9334 | 0.7136 | 1.0653 | 0.036* | |
| C14 | 0.42255 (15) | 0.7483 (4) | 0.87894 (12) | 0.0255 (4) | |
| H14A | 0.4283 | 0.8895 | 0.8427 | 0.038* | |
| H14B | 0.4043 | 0.8118 | 0.9291 | 0.038* | |
| H14C | 0.3690 | 0.6324 | 0.8530 | 0.038* |
| N1 | 0.0185 (7) | 0.0259 (8) | 0.0165 (7) | 0.0004 (6) | −0.0023 (5) | −0.0027 (6) |
| N2 | 0.0205 (7) | 0.0238 (8) | 0.0145 (7) | 0.0001 (6) | −0.0009 (5) | 0.0008 (6) |
| N3 | 0.0196 (7) | 0.0250 (8) | 0.0164 (7) | 0.0014 (6) | 0.0010 (5) | 0.0005 (6) |
| C1 | 0.0218 (9) | 0.0278 (10) | 0.0221 (9) | −0.0006 (8) | −0.0016 (7) | −0.0040 (8) |
| C2 | 0.0209 (9) | 0.0329 (11) | 0.0270 (9) | 0.0014 (8) | −0.0016 (7) | −0.0027 (8) |
| C3 | 0.0242 (9) | 0.0279 (10) | 0.0243 (9) | 0.0047 (8) | 0.0031 (7) | 0.0001 (8) |
| C4 | 0.0290 (10) | 0.0234 (10) | 0.0194 (8) | −0.0003 (8) | 0.0027 (7) | −0.0025 (7) |
| C5 | 0.0226 (9) | 0.0220 (9) | 0.0166 (8) | −0.0016 (7) | 0.0002 (6) | 0.0006 (7) |
| C6 | 0.0207 (8) | 0.0227 (9) | 0.0146 (7) | 0.0004 (7) | 0.0014 (6) | 0.0019 (7) |
| C7 | 0.0200 (8) | 0.0221 (9) | 0.0138 (7) | 0.0002 (7) | 0.0007 (6) | 0.0016 (7) |
| C8 | 0.0227 (9) | 0.0233 (9) | 0.0151 (8) | −0.0009 (7) | 0.0005 (6) | 0.0016 (7) |
| C9 | 0.0258 (9) | 0.0246 (10) | 0.0181 (8) | 0.0028 (8) | 0.0001 (7) | −0.0033 (7) |
| C10 | 0.0219 (9) | 0.0235 (9) | 0.0167 (8) | 0.0015 (7) | 0.0018 (6) | 0.0022 (7) |
| C11 | 0.0250 (9) | 0.0284 (10) | 0.0180 (8) | 0.0005 (8) | −0.0025 (7) | −0.0035 (7) |
| C12 | 0.0244 (9) | 0.0333 (11) | 0.0216 (9) | 0.0006 (8) | −0.0053 (7) | 0.0005 (8) |
| C13 | 0.0245 (9) | 0.0382 (12) | 0.0247 (9) | −0.0057 (8) | −0.0022 (7) | −0.0022 (9) |
| C14 | 0.0232 (9) | 0.0289 (10) | 0.0226 (9) | 0.0054 (8) | −0.0005 (7) | −0.0004 (8) |
| N1—C7 | 1.367 (2) | C5—H5 | 0.9500 |
| N1—C6 | 1.404 (2) | C8—C9 | 1.384 (3) |
| N1—H1N | 0.8800 | C8—C11 | 1.481 (2) |
| N2—C7 | 1.341 (2) | C9—C10 | 1.392 (3) |
| N2—C8 | 1.343 (2) | C9—H9 | 0.9500 |
| N3—C10 | 1.337 (2) | C10—C14 | 1.498 (3) |
| N3—C7 | 1.355 (2) | C11—C13 | 1.507 (3) |
| C1—C2 | 1.387 (3) | C11—C12 | 1.514 (3) |
| C1—C6 | 1.400 (2) | C11—H11 | 1.0000 |
| C1—H1 | 0.9500 | C12—C13 | 1.488 (3) |
| C2—C3 | 1.388 (3) | C12—H12A | 0.9900 |
| C2—H2 | 0.9500 | C12—H12B | 0.9900 |
| C3—C4 | 1.392 (3) | C13—H13A | 0.9900 |
| C3—H3 | 0.9500 | C13—H13B | 0.9900 |
| C4—C5 | 1.383 (3) | C14—H14A | 0.9800 |
| C4—H4 | 0.9500 | C14—H14B | 0.9800 |
| C5—C6 | 1.402 (3) | C14—H14C | 0.9800 |
| C7—N1—C6 | 130.97 (15) | C8—C9—H9 | 121.0 |
| C7—N1—H1N | 114.5 | C10—C9—H9 | 121.0 |
| C6—N1—H1N | 114.5 | N3—C10—C9 | 121.56 (17) |
| C7—N2—C8 | 116.06 (16) | N3—C10—C14 | 117.93 (16) |
| C10—N3—C7 | 116.01 (16) | C9—C10—C14 | 120.50 (17) |
| C2—C1—C6 | 119.45 (18) | C8—C11—C13 | 119.78 (16) |
| C2—C1—H1 | 120.3 | C8—C11—C12 | 119.22 (18) |
| C6—C1—H1 | 120.3 | C13—C11—C12 | 58.99 (14) |
| C1—C2—C3 | 121.81 (18) | C8—C11—H11 | 115.7 |
| C1—C2—H2 | 119.1 | C13—C11—H11 | 115.7 |
| C3—C2—H2 | 119.1 | C12—C11—H11 | 115.7 |
| C2—C3—C4 | 118.62 (18) | C13—C12—C11 | 60.26 (14) |
| C2—C3—H3 | 120.7 | C13—C12—H12A | 117.7 |
| C4—C3—H3 | 120.7 | C11—C12—H12A | 117.7 |
| C5—C4—C3 | 120.47 (18) | C13—C12—H12B | 117.7 |
| C5—C4—H4 | 119.8 | C11—C12—H12B | 117.7 |
| C3—C4—H4 | 119.8 | H12A—C12—H12B | 114.9 |
| C4—C5—C6 | 120.82 (17) | C12—C13—C11 | 60.74 (14) |
| C4—C5—H5 | 119.6 | C12—C13—H13A | 117.7 |
| C6—C5—H5 | 119.6 | C11—C13—H13A | 117.7 |
| C1—C6—C5 | 118.84 (17) | C12—C13—H13B | 117.7 |
| C1—C6—N1 | 125.02 (17) | C11—C13—H13B | 117.7 |
| C5—C6—N1 | 116.12 (16) | H13A—C13—H13B | 114.8 |
| N2—C7—N3 | 126.65 (17) | C10—C14—H14A | 109.5 |
| N2—C7—N1 | 119.35 (16) | C10—C14—H14B | 109.5 |
| N3—C7—N1 | 114.00 (16) | H14A—C14—H14B | 109.5 |
| N2—C8—C9 | 121.73 (17) | C10—C14—H14C | 109.5 |
| N2—C8—C11 | 117.43 (17) | H14A—C14—H14C | 109.5 |
| C9—C8—C11 | 120.82 (17) | H14B—C14—H14C | 109.5 |
| C8—C9—C10 | 117.96 (18) | ||
| C6—C1—C2—C3 | −0.5 (3) | C6—N1—C7—N3 | 172.68 (17) |
| C1—C2—C3—C4 | 0.5 (3) | C7—N2—C8—C9 | 1.2 (3) |
| C2—C3—C4—C5 | −0.2 (3) | C7—N2—C8—C11 | 179.58 (16) |
| C3—C4—C5—C6 | −0.1 (3) | N2—C8—C9—C10 | 0.0 (3) |
| C2—C1—C6—C5 | 0.2 (3) | C11—C8—C9—C10 | −178.32 (18) |
| C2—C1—C6—N1 | −178.05 (18) | C7—N3—C10—C9 | 1.0 (3) |
| C4—C5—C6—C1 | 0.1 (3) | C7—N3—C10—C14 | −179.81 (17) |
| C4—C5—C6—N1 | 178.52 (17) | C8—C9—C10—N3 | −1.2 (3) |
| C7—N1—C6—C1 | −8.8 (3) | C8—C9—C10—C14 | 179.64 (18) |
| C7—N1—C6—C5 | 172.85 (18) | N2—C8—C11—C13 | 35.3 (3) |
| C8—N2—C7—N3 | −1.5 (3) | C9—C8—C11—C13 | −146.3 (2) |
| C8—N2—C7—N1 | 179.34 (16) | N2—C8—C11—C12 | −33.6 (3) |
| C10—N3—C7—N2 | 0.4 (3) | C9—C8—C11—C12 | 144.84 (19) |
| C10—N3—C7—N1 | 179.63 (16) | C8—C11—C12—C13 | 109.1 (2) |
| C6—N1—C7—N2 | −8.0 (3) | C8—C11—C13—C12 | −108.2 (2) |