| Literature DB >> 25705460 |
Ligia R Gomes1, John Nicolson Low2, Fernando Cagide3, Fernanda Borges3.
Abstract
Four N-(4-halophen-yl)-4-oxo-4H-chromene-3-carboxamides (halo = F, Cl, Br and I),Entities:
Keywords: chromones; conformation; crystal structure; drug design; supramolecular structure
Year: 2015 PMID: 25705460 PMCID: PMC4331845 DOI: 10.1107/S2056989014027054
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the asymmetric unit of (1), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 80% probability level. Dashed lines indicate the intramolecular contacts.
Figure 2A view of the asymmetric unit of (2), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 80% probability level. Dashed lines indicate the intramolecular contacts.
Figure 3A view of the asymmetric unit of (3), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 80% probability level. Dashed lines indicate the intramolecular contacts.
Figure 4A view of the asymmetric unit of (4), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 80% probability level. Dashed lines indicate the intramolecular contacts.
Selected dihedral angles ()
1 is the dihedral angle between the mean planes of the chromene and phenyl rings and the phenyl ring. 2 is the dihedral angle between the mean plane of the chromone ring and the plane defined by atoms O2, C31 and N3. 3 is the dihedral angle between the mean planes of the phenyl ring and the plane defined by atoms O3, C31 and N3.
| Compound | 1 | 2 | 3 |
|---|---|---|---|
| (1) | 2.51(3) | 5.51(12) | 5.05(13) |
| (2) | 1.95(7) | 5.7(3) | 4.4(3) |
| (3) | 4.90(10) | 2.0(4) | 2.9(4) |
| (4) | 5.37(10) | 1.8(4) | 3.6(4) |
Figure 5Anti-rotamer conformations around the C—N rotamer for the 3-carboxamides (top) and for the 2-carboxamide isomers (bottom), showing the relative positions of the C3arom—C2arom bond of the chromone ring with respect to the carboxylic group of the amide: cis (right) or trans (left) geometries.
Hydrogen-bond geometry (, ) for (1)
|
|
| H |
|
|
|---|---|---|---|---|
| N3H3O4 | 0.896(17) | 1.901(17) | 2.7024(13) | 147.9(15) |
| C312H312O3 | 0.95 | 2.26 | 2.8714(15) | 122 |
| C2H2O4i | 0.95 | 2.45 | 3.1645(14) | 132 |
| C316H316O3ii | 0.95 | 2.46 | 3.3160(14) | 149 |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (, ) for (2)
|
|
| H |
|
|
|---|---|---|---|---|
| N3H3O4 | 0.85(3) | 1.92(3) | 2.680(3) | 148(3) |
| C312H312O3 | 0.95 | 2.29 | 2.892(3) | 121 |
| C2H2O4i | 0.95 | 2.47 | 3.194(3) | 133 |
| C316H316O3ii | 0.95 | 2.45 | 3.286(3) | 146 |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (, ) for (3)
|
|
| H |
|
|
|---|---|---|---|---|
| N3H3O4 | 0.86(2) | 1.95(2) | 2.695(2) | 145(2) |
| C312H312O3 | 0.95 | 2.26 | 2.877(2) | 129 |
| C2H2O4i | 0.95 | 2.41 | 3.167(2) | 137 |
| C316H316O3ii | 0.95 | 2.47 | 3.314(2) | 148 |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (, ) for (4)
|
|
| H |
|
|
|---|---|---|---|---|
| N3H3O4 | 0.92(2) | 1.89(2) | 2.6977(19) | 145(2) |
| C2H2O3 | 0.95 | 2.33 | 2.718(2) | 104 |
| C312H312O3 | 0.95 | 2.27 | 2.881(2) | 122 |
| C2H2O4i | 0.95 | 2.44 | 3.185(2) | 136 |
| C316H316O3ii | 0.95 | 2.49 | 3.312(2) | 145 |
Symmetry codes: (i) ; (ii) .
Figure 6The distorted ladder formed by linked (13) rings in compound (3). The chain runs parallel to the a axis. Hydrogen bonds are indicated by blue dashed lines. Hydrogen atoms not involved in the hydrogen bonding have been omitted for clarity. A similar structure is found for compound (1) and all the halo-substituted compounds. [Symmetry codes: (i) x + 1, y, z; (ii) x − 1, y, x.]
stacking (, )
Cg1, Cg2, Cg3 and Cg7 [compound (6)] are the centroids of the rings containing atoms O1, C5, C311 and C211 [compound (6)], respectively. In contacts indicated *, the planes involved are inclined to each other, the perpendicular distance between the planes is an average value and the angle between the planes is given in place of a slippage. Only interplanar interactions with Cg Cg distances 4.0 and with angles between the planes of 10 are included.
| Compound | contact | distance | perp. dist. | angle between planes |
|---|---|---|---|---|
| (1) |
| 3.5187(8) | 3.3226* | 1.77(6)* |
|
| 3.543(8) | 3.3719* | 1.77(6)* | |
| (2) |
| 3.5341(17) | 3.3573* | 0.77(13)* |
|
| 3.6691(17) | 3.3985* | 3.14(13)* | |
| (3) |
| 3.5464(11) | 3.3342* | 4.66(9)* |
| (4) |
| 3.5721(11) | 3.3518* | 5.37(9) |
Symmetry codes: (iii) x+1, y+1, z+1; (iv) x, y+2, z; (v) x+1, y, z+1; (vi) x, y, z.
Experimental details
| (1) | (2) | (3) | (4) | |
|---|---|---|---|---|
| Crystal data | ||||
| Chemical formula | C16H10FNO3 | C16H10ClNO3 | C16H10BrNO3 | C16H10INO3 |
|
| 283.25 | 299.70 | 344.16 | 391.15 |
| Crystal system, space group | Triclinic, | Triclinic, | Triclinic, | Triclinic, |
| Temperature (K) | 100 | 100 | 120 | 120 |
|
| 6.6213(5), 7.0517(5), 14.0864(10) | 6.6325(12), 7.0577(12), 14.671(3) | 6.6505(5), 9.3580(7), 11.0060(8) | 6.6750(5), 9.4166(7), 11.2673(8) |
| , , () | 101.957(7), 90.047(6), 106.657(7) | 103.536(7), 89.714(6), 105.589(7) | 100.280(6), 90.461(6), 100.884(6) | 100.974(6), 90.769(6), 100.062(6) |
|
| 615.17(8) | 641.9(2) | 661.24(9) | 683.77(9) |
|
| 2 | 2 | 2 | 2 |
| Radiation type | Mo | Mo | Mo | Mo |
| (mm1) | 0.12 | 0.31 | 3.12 | 2.35 |
| Crystal size (mm) | 0.46 0.32 0.02 | 0.17 0.17 0.04 | 0.58 0.18 0.06 | 0.46 0.22 0.05 |
| Data collection | ||||
| Diffractometer | Rigaku Saturn724+ | Rigaku AFC12 | Rigaku R-AXIS conversion | Rigaku R-AXIS conversion |
| Absorption correction | Multi-scan ( | Multi-scan ( | Multi-scan ( | Multi-scan ( |
|
| 0.949, 0.998 | 0.950, 0.988 | 0.265, 0.835 | 0.411, 0.892 |
| No. of measured, independent and observed [ | 8176, 2789, 2393 | 7435, 2265, 1668 | 9930, 3017, 2525 | 10032, 3095, 2819 |
|
| 0.056 | 0.078 | 0.045 | 0.026 |
| (sin /)max (1) | 0.649 | 0.598 | 0.649 | 0.649 |
| Refinement | ||||
|
| 0.044, 0.135, 1.06 | 0.056, 0.145, 0.99 | 0.027, 0.058, 0.94 | 0.018, 0.044, 1.03 |
| No. of reflections | 2789 | 2265 | 3017 | 3095 |
| No. of parameters | 194 | 194 | 194 | 194 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.41, 0.27 | 0.30, 0.65 | 0.53, 0.69 | 0.67, 0.32 |
Computer programs: CrystalClear-SM Expert (Rigaku, 2012 ▸), SHELXS97 and SHELXL2014 (Sheldrick, 2008 ▸), PLATON (Spek, 2009 ▸) Flipper 25 (Oszlnyi St, 2004 ▸), OSCAIL (McArdle et al., 2004 ▸), ShelXle (Hbschle et al., 2011 ▸), Mercury (Macrae et al., 2006 ▸) and OSCAIL (McArdle et al., 2004 ▸).
| C16H10INO3 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 9236 reflections | |
| θ = 1.8–27.5° | |
| α = 100.974 (6)° | µ = 2.35 mm−1 |
| β = 90.769 (6)° | |
| γ = 100.062 (6)° | Plate, colourless |
| 0.46 × 0.22 × 0.05 mm |
| Rigaku RAXIS conversion diffractometer | 3095 independent reflections |
| Radiation source: Sealed Tube | 2819 reflections with |
| Graphite Monochromator monochromator | |
| Detector resolution: 10.0000 pixels mm-1 | θmax = 27.5°, θmin = 2.2° |
| profile data from ω–scans | |
| Absorption correction: multi-scan ( | |
| 10032 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 3095 reflections | Δρmax = 0.67 e Å−3 |
| 194 parameters | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| I314 | 0.09431 (2) | 0.28556 (2) | 0.97093 (2) | 0.02278 (5) | |
| O1 | 0.88205 (19) | 0.94124 (14) | 0.35573 (11) | 0.0188 (3) | |
| O3 | 0.7838 (2) | 0.68549 (15) | 0.60794 (12) | 0.0219 (3) | |
| O4 | 0.28854 (19) | 0.79085 (14) | 0.42255 (11) | 0.0199 (3) | |
| N3 | 0.4362 (2) | 0.65097 (16) | 0.58280 (13) | 0.0152 (3) | |
| H3 | 0.337 (3) | 0.678 (2) | 0.5384 (19) | 0.017 (5)* | |
| C2 | 0.8340 (3) | 0.85191 (19) | 0.43445 (15) | 0.0166 (3) | |
| H2 | 0.9434 | 0.8230 | 0.4731 | 0.020* | |
| C3 | 0.6432 (3) | 0.79929 (17) | 0.46363 (14) | 0.0144 (3) | |
| C4 | 0.4692 (3) | 0.83443 (18) | 0.40253 (14) | 0.0144 (3) | |
| C4A | 0.5235 (3) | 0.92875 (18) | 0.31366 (14) | 0.0149 (3) | |
| C5 | 0.3733 (3) | 0.9701 (2) | 0.24576 (16) | 0.0193 (4) | |
| H5 | 0.2334 | 0.9352 | 0.2557 | 0.023* | |
| C6 | 0.4280 (3) | 1.0611 (2) | 0.16480 (16) | 0.0221 (4) | |
| H6 | 0.3257 | 1.0865 | 0.1176 | 0.026* | |
| C7 | 0.6338 (3) | 1.1164 (2) | 0.15168 (16) | 0.0217 (4) | |
| H7 | 0.6696 | 1.1811 | 0.0971 | 0.026* | |
| C8 | 0.7853 (3) | 1.0777 (2) | 0.21751 (16) | 0.0211 (4) | |
| H8 | 0.9249 | 1.1154 | 0.2094 | 0.025* | |
| C8A | 0.7265 (3) | 0.98182 (19) | 0.29605 (15) | 0.0167 (3) | |
| C311 | 0.3707 (3) | 0.56515 (18) | 0.66915 (14) | 0.0147 (3) | |
| C312 | 0.5034 (3) | 0.52301 (19) | 0.74728 (15) | 0.0170 (3) | |
| H312 | 0.6466 | 0.5501 | 0.7426 | 0.020* | |
| C313 | 0.4242 (3) | 0.4409 (2) | 0.83219 (15) | 0.0183 (3) | |
| H313 | 0.5134 | 0.4119 | 0.8857 | 0.022* | |
| C314 | 0.2148 (3) | 0.40150 (18) | 0.83828 (15) | 0.0167 (3) | |
| C315 | 0.0823 (3) | 0.44141 (19) | 0.75977 (15) | 0.0178 (3) | |
| H315 | −0.0608 | 0.4127 | 0.7637 | 0.021* | |
| C316 | 0.1603 (3) | 0.52325 (19) | 0.67578 (15) | 0.0171 (3) | |
| H316 | 0.0702 | 0.5512 | 0.6221 | 0.020* | |
| C31 | 0.6294 (3) | 0.70661 (18) | 0.55846 (15) | 0.0154 (3) |
| I314 | 0.02679 (8) | 0.02415 (7) | 0.01880 (6) | 0.00303 (5) | 0.00371 (4) | 0.00890 (4) |
| O1 | 0.0120 (6) | 0.0209 (6) | 0.0242 (6) | 0.0014 (5) | 0.0022 (5) | 0.0074 (5) |
| O3 | 0.0143 (6) | 0.0284 (7) | 0.0258 (7) | 0.0053 (5) | −0.0013 (5) | 0.0108 (5) |
| O4 | 0.0116 (6) | 0.0256 (7) | 0.0248 (6) | 0.0024 (5) | 0.0016 (5) | 0.0116 (5) |
| N3 | 0.0136 (7) | 0.0169 (7) | 0.0164 (7) | 0.0040 (6) | −0.0002 (5) | 0.0057 (5) |
| C2 | 0.0139 (8) | 0.0165 (8) | 0.0192 (8) | 0.0035 (6) | −0.0004 (6) | 0.0027 (6) |
| C3 | 0.0138 (8) | 0.0129 (8) | 0.0158 (7) | 0.0027 (6) | 0.0005 (6) | 0.0005 (6) |
| C4 | 0.0132 (8) | 0.0146 (8) | 0.0151 (7) | 0.0027 (6) | 0.0006 (6) | 0.0018 (6) |
| C4A | 0.0157 (9) | 0.0141 (8) | 0.0146 (7) | 0.0031 (6) | 0.0021 (6) | 0.0017 (6) |
| C5 | 0.0169 (9) | 0.0217 (9) | 0.0195 (8) | 0.0036 (7) | 0.0019 (6) | 0.0045 (6) |
| C6 | 0.0260 (10) | 0.0246 (9) | 0.0186 (8) | 0.0088 (8) | 0.0007 (7) | 0.0078 (7) |
| C7 | 0.0283 (10) | 0.0197 (9) | 0.0198 (8) | 0.0066 (7) | 0.0080 (7) | 0.0078 (6) |
| C8 | 0.0202 (10) | 0.0193 (9) | 0.0236 (9) | 0.0024 (7) | 0.0066 (7) | 0.0047 (7) |
| C8A | 0.0161 (9) | 0.0155 (8) | 0.0181 (8) | 0.0035 (6) | 0.0026 (6) | 0.0016 (6) |
| C311 | 0.0166 (9) | 0.0127 (8) | 0.0145 (7) | 0.0034 (6) | 0.0011 (6) | 0.0014 (6) |
| C312 | 0.0147 (9) | 0.0183 (8) | 0.0186 (8) | 0.0041 (7) | −0.0002 (6) | 0.0038 (6) |
| C313 | 0.0199 (9) | 0.0198 (8) | 0.0164 (8) | 0.0065 (7) | −0.0023 (6) | 0.0038 (6) |
| C314 | 0.0203 (9) | 0.0148 (8) | 0.0149 (7) | 0.0018 (7) | 0.0026 (6) | 0.0039 (6) |
| C315 | 0.0148 (9) | 0.0199 (9) | 0.0183 (8) | 0.0030 (7) | 0.0018 (6) | 0.0029 (6) |
| C316 | 0.0164 (9) | 0.0171 (8) | 0.0184 (8) | 0.0055 (7) | −0.0014 (6) | 0.0027 (6) |
| C31 | 0.0161 (9) | 0.0140 (8) | 0.0157 (7) | 0.0036 (6) | 0.0007 (6) | 0.0010 (6) |
| I314—C314 | 2.1023 (17) | C6—C7 | 1.401 (3) |
| O1—C2 | 1.340 (2) | C6—H6 | 0.9500 |
| O1—C8A | 1.376 (2) | C7—C8 | 1.385 (3) |
| O3—C31 | 1.229 (2) | C7—H7 | 0.9500 |
| O4—C4 | 1.243 (2) | C8—C8A | 1.394 (2) |
| N3—C31 | 1.357 (2) | C8—H8 | 0.9500 |
| N3—C311 | 1.406 (2) | C311—C312 | 1.397 (2) |
| N3—H3 | 0.92 (2) | C311—C316 | 1.398 (3) |
| C2—C3 | 1.352 (2) | C312—C313 | 1.395 (3) |
| C2—H2 | 0.9500 | C312—H312 | 0.9500 |
| C3—C4 | 1.460 (2) | C313—C314 | 1.388 (3) |
| C3—C31 | 1.497 (2) | C313—H313 | 0.9500 |
| C4—C4A | 1.469 (2) | C314—C315 | 1.389 (2) |
| C4A—C8A | 1.390 (2) | C315—C316 | 1.383 (2) |
| C4A—C5 | 1.404 (2) | C315—H315 | 0.9500 |
| C5—C6 | 1.377 (3) | C316—H316 | 0.9500 |
| C5—H5 | 0.9500 | ||
| C2—O1—C8A | 118.48 (14) | C7—C8—H8 | 121.0 |
| C31—N3—C311 | 128.55 (15) | C8A—C8—H8 | 121.0 |
| C31—N3—H3 | 114.0 (15) | O1—C8A—C4A | 121.30 (15) |
| C311—N3—H3 | 117.4 (15) | O1—C8A—C8 | 116.04 (16) |
| O1—C2—C3 | 125.61 (16) | C4A—C8A—C8 | 122.66 (17) |
| O1—C2—H2 | 117.2 | C312—C311—C316 | 119.80 (16) |
| C3—C2—H2 | 117.2 | C312—C311—N3 | 123.60 (16) |
| C2—C3—C4 | 119.41 (15) | C316—C311—N3 | 116.59 (15) |
| C2—C3—C31 | 115.53 (15) | C313—C312—C311 | 119.53 (17) |
| C4—C3—C31 | 125.07 (15) | C313—C312—H312 | 120.2 |
| O4—C4—C3 | 124.22 (16) | C311—C312—H312 | 120.2 |
| O4—C4—C4A | 121.28 (16) | C314—C313—C312 | 119.87 (16) |
| C3—C4—C4A | 114.49 (15) | C314—C313—H313 | 120.1 |
| C8A—C4A—C5 | 118.05 (16) | C312—C313—H313 | 120.1 |
| C8A—C4A—C4 | 120.59 (16) | C313—C314—C315 | 120.84 (16) |
| C5—C4A—C4 | 121.35 (16) | C313—C314—I314 | 120.05 (13) |
| C6—C5—C4A | 120.26 (18) | C315—C314—I314 | 119.08 (13) |
| C6—C5—H5 | 119.9 | C316—C315—C314 | 119.42 (17) |
| C4A—C5—H5 | 119.9 | C316—C315—H315 | 120.3 |
| C5—C6—C7 | 120.37 (18) | C314—C315—H315 | 120.3 |
| C5—C6—H6 | 119.8 | C315—C316—C311 | 120.53 (16) |
| C7—C6—H6 | 119.8 | C315—C316—H316 | 119.7 |
| C8—C7—C6 | 120.65 (17) | C311—C316—H316 | 119.7 |
| C8—C7—H7 | 119.7 | O3—C31—N3 | 124.75 (16) |
| C6—C7—H7 | 119.7 | O3—C31—C3 | 121.00 (16) |
| C7—C8—C8A | 117.95 (17) | N3—C31—C3 | 114.25 (15) |
| C8A—O1—C2—C3 | −1.7 (2) | C4—C4A—C8A—C8 | −176.55 (16) |
| O1—C2—C3—C4 | 3.0 (3) | C7—C8—C8A—O1 | 177.28 (15) |
| O1—C2—C3—C31 | −177.33 (15) | C7—C8—C8A—C4A | −2.4 (3) |
| C2—C3—C4—O4 | 179.64 (16) | C31—N3—C311—C312 | 0.3 (3) |
| C31—C3—C4—O4 | 0.0 (3) | C31—N3—C311—C316 | 179.48 (16) |
| C2—C3—C4—C4A | −0.9 (2) | C316—C311—C312—C313 | −0.7 (2) |
| C31—C3—C4—C4A | 179.46 (15) | N3—C311—C312—C313 | 178.37 (16) |
| O4—C4—C4A—C8A | 177.21 (15) | C311—C312—C313—C314 | 0.1 (3) |
| C3—C4—C4A—C8A | −2.3 (2) | C312—C313—C314—C315 | 0.8 (3) |
| O4—C4—C4A—C5 | −1.7 (3) | C312—C313—C314—I314 | −177.36 (13) |
| C3—C4—C4A—C5 | 178.81 (15) | C313—C314—C315—C316 | −1.0 (3) |
| C8A—C4A—C5—C6 | −0.2 (3) | I314—C314—C315—C316 | 177.17 (12) |
| C4—C4A—C5—C6 | 178.65 (16) | C314—C315—C316—C311 | 0.3 (3) |
| C4A—C5—C6—C7 | −1.7 (3) | C312—C311—C316—C315 | 0.5 (3) |
| C5—C6—C7—C8 | 1.6 (3) | N3—C311—C316—C315 | −178.64 (15) |
| C6—C7—C8—C8A | 0.4 (3) | C311—N3—C31—O3 | 2.5 (3) |
| C2—O1—C8A—C4A | −1.8 (2) | C311—N3—C31—C3 | −177.41 (15) |
| C2—O1—C8A—C8 | 178.47 (15) | C2—C3—C31—O3 | 2.3 (2) |
| C5—C4A—C8A—O1 | −177.34 (15) | C4—C3—C31—O3 | −178.01 (15) |
| C4—C4A—C8A—O1 | 3.7 (2) | C2—C3—C31—N3 | −177.74 (14) |
| C5—C4A—C8A—C8 | 2.4 (3) | C4—C3—C31—N3 | 1.9 (2) |
| H··· | ||||
| N3—H3···O4 | 0.92 (2) | 1.89 (2) | 2.6977 (19) | 145 (2) |
| C2—H2···O3 | 0.95 | 2.33 | 2.718 (2) | 104 |
| C312—H312···O3 | 0.95 | 2.27 | 2.881 (2) | 122 |
| C2—H2···O4i | 0.95 | 2.44 | 3.185 (2) | 136 |
| C316—H316···O3ii | 0.95 | 2.49 | 3.312 (2) | 145 |