Literature DB >> 25705459

Crystal structure of (E)-1-{2-[(5,5-dimethyl-1,3,2-dioxaphosphinan-2-yl)-oxy]naphthalen-1-yl}-N-(4-fluoro-phen-yl)methanimine.

Musa A Said1, Bayan L Al Belewi1, David L Hughes2.   

Abstract

In the title compound, C22H21FNO3P, a n class="Chemical">1,3,2-dioxaphosphinan-2-yloxy derivative, three O atoms are bonded in a trigonal-pyramidal manner to the P atom. The exocyclic P-O bond is significantly longer than the two endocyclic P-O bonds, viz. 1.6678 (12) Å compared to 1.6046 (13) and 1.6096 (12) Å. The six-membered ring which includes the P atom has a chair conformation. The fluoro-phenyl ring is inclined to the naphthalene ring system by 24.42 (7)°. In the crystal, mol-ecules are linked via C-H⋯π inter-actions, forming slabs lying parallel to (10-1).

Entities:  

Keywords:  1,3,2-dioxaphosphinan-2-oxy; C—H⋯π inter­actions; crystal structure; naphthalene; phosphites

Year:  2015        PMID: 25705459      PMCID: PMC4331876          DOI: 10.1107/S2056989014026838

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Many phospho­rus and/or nitro­gen based ligands bind strongly to transition metals and they offer a wide range of properties and basicities due to the large variety of accessible substituents (Crabtree, 2005 ▸; Joslin et al., 2012 ▸; Kuehl, 2005 ▸; Tolman, 1977 ▸). The title compound is an example of a phospho­rus-nitro­gen bidentate ligand. Complexation experiments with such ligands could result in the isolation of mono- or bi-nuclear complexes (van den Beuken et al., 1997 ▸). Examples of bidentate ligands with phospho­rus and nitro­gen donor groups bonded to transition metals have been shown to be effective cross-coupling catalysts (Hayashi & Kumada, 1985 ▸). The present work is a continuation of the investigation into the synthesis and study of more bi- and tri-cyclic, n class="Chemical">penta- and hexa-­coordinated phospho­ranes to form anionic, neutral and zwitterionic compounds (Said et al. 1996 ▸; Timosheva et al. 2006 ▸; Kumara Swamy & Kumar, 2006 ▸).

Structural commentary

The mol­ecular structure of the title compound, Fig. 1 ▸, shows that the three oxygen atoms about the phospho­rus atom are bonded in a trigonal pyramidal form. The O—P—O angles are in the range of 96.35 (6) to 102.37 (6)°. The P1—O2 bond length [1.6678 (12) Å] is significantly longer than the other P—O bonds [1.6046 (13) and 1.6096 (12) Å]. The six-membered ring which includes the phospho­rus atom has a chair conformation. The fluoro­phenyl ring is inclined to the n class="Chemical">naphthalene ring system by 24.42 (7)°. The mol­ecule has an E conformation about the C=N bond (Fig. 1 ▸).
Figure 1

The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal, mol­ecules are linked via C—H⋯π inter­actions (Table 1 ▸), forming slabs lying parallel to (10), as shown in Fig. 2 ▸.
Table 1

CH interactions (, )

Cg1 and Cg2 are the centroids of rings C1C4/C9/C10 and C121C126, respectively.

DHA DHHA D A DHA
C4H4Cg1i 0.932.703.456(2)140
C35H35C Cg2ii 0.962.943.878(2)167

Symmetry codes: (i) ; (ii) .

Figure 2

A view along the b axis of the crystal packing of the title compound showing the H⋯C contacts (dashed lines) of the C—H⋯π weak interactions (see Table 1 ▸ for details).

Synthesis and crystallization

To 1.02 g (6.05 mmol) of 2-chloro-5,5-dimethyl-1,2,3-dioxaphosphinane in 40 ml of dry di­chloro­methane was added 1.61 g (6.05 mmol) of (E)-1-[(4-fluoro­phenyl­imino)­meth­yl]­n class="Chemical">naphthalene-2-ol in 10 ml of dry di­chloro­methane. The mixture was refluxed under a slow flow of nitro­gen for 4 h. The solvent was reduced to 5 ml under vacuum and 3 ml of dry n-hexane were added to afford the title compound as a pale-yellow crystalline solid (yield 2.07 g, 86%; m.p. 401–405 K). 1H NMR (CDCl3, 450 MHz): δ 9.16 (s, 1H, CHN), 7.83–7.01 (m, 10H, Ar—H), 4.22 (d, 2H, CH2), 3.40 (t, 2H, CH2), 1.23 (s, 3H, CH3), 0.65 (s, 3H, CH3). 13C NMR (CDCl3, 450 MHz): δ 162.46–115.62 (aromatic carbons), 69.86 (1C, CMe2), 32.95 (2C, CH2), 22.46 (2C, CH3). 31P NMR (CDCl3, 450 MHz): δ 116.31. 19F NMR (CDCl3, 450 MHz): δ −116.10.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The H atoms were included in idealized positions and treated as riding atoms: C—H = 0.93–0.97 Å with U iso(H) = 1.5U eq(C) for methyl n class="Disease">H atoms and = 1.2U eq(C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC22H21FNO3P
M r 397.37
Crystal system, space groupMonoclinic, P21/n
Temperature (K)140
a, b, c ()18.3667(8), 5.7898(2), 19.7710(7)
()110.870(4)
V (3)1964.50(13)
Z 4
Radiation typeMo K
(mm1)0.17
Crystal size (mm)0.40 0.11 0.07
 
Data collection
DiffractometerOxford Diffraction Xcalibur 3/Sapphire3 CCD
Absorption correctionMulti-scan (CrysAlis PRO; Oxford Diffraction, 2010)
T min, T max 0.790, 1.000
No. of measured, independent and observed [I > 2(I)] reflections32284, 4518, 3624
R int 0.054
(sin /)max (1)0.650
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.044, 0.097, 1.05
No. of reflections4518
No. of parameters253
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.26, 0.34

Computer programs: CrysAlis PRO (Oxford Diffraction, 2010 ▸), SHELXS97, SHELXL97 and SHELXL2014 (Sheldrick, 2008 ▸), ORTEPII (Johnson, 1976 ▸) and WinGX (Farrugia, 2012 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989014026838/su5030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026838/su5030Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014026838/su5030Isup3.cml CCDC reference: 1037929 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H21FNO3PF(000) = 832
Mr = 397.37Dx = 1.344 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 18.3667 (8) ÅCell parameters from 5215 reflections
b = 5.7898 (2) Åθ = 3.1–32.5°
c = 19.7710 (7) ŵ = 0.17 mm1
β = 110.870 (4)°T = 140 K
V = 1964.50 (13) Å3Prism, pale yellow
Z = 40.40 × 0.11 × 0.07 mm
Oxford Diffraction Xcalibur 3/Sapphire3 CCD diffractometer4518 independent reflections
Radiation source: Enhance (Mo) X-ray Source3624 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
Detector resolution: 16.0050 pixels mm-1θmax = 27.5°, θmin = 3.1°
Thin–slice φ and ω scansh = −23→23
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −7→7
Tmin = 0.790, Tmax = 1.000l = −25→25
32284 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0347P)2 + 0.8268P] where P = (Fo2 + 2Fc2)/3
4518 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Reflections were merged by SHELXL according to the crystal class for the calculation of statistics and refinement._reflns_Friedel_fraction is defined as the number of unique Friedel pairs measured divided by the number that would be possible theoretically, ignoring centric projections and systematic absences.
xyzUiso*/Ueq
C10.40211 (9)0.4807 (3)0.77326 (8)0.0211 (3)
C20.37237 (9)0.3394 (3)0.71306 (8)0.0219 (3)
C30.32866 (10)0.1394 (3)0.71261 (9)0.0250 (4)
H30.30850.05080.67080.030*
C40.31611 (10)0.0769 (3)0.77383 (9)0.0275 (4)
H40.2892−0.05880.77420.033*
C50.32844 (12)0.1500 (4)0.89990 (10)0.0382 (5)
H50.30140.01420.89990.046*
C60.35310 (13)0.2835 (4)0.96045 (11)0.0494 (6)
H60.34370.23811.00170.059*
C70.39270 (13)0.4898 (4)0.96012 (11)0.0480 (6)
H70.40840.58261.00120.058*
C80.40887 (11)0.5581 (4)0.90065 (9)0.0349 (4)
H80.43540.69580.90200.042*
C90.38558 (9)0.4212 (3)0.83716 (9)0.0240 (4)
C100.34324 (10)0.2143 (3)0.83686 (9)0.0262 (4)
C110.45172 (9)0.6736 (3)0.76817 (8)0.0221 (3)
H110.44770.72200.72210.027*
N120.49987 (8)0.7800 (2)0.82205 (7)0.0240 (3)
C1210.54836 (9)0.9486 (3)0.80773 (9)0.0228 (3)
C1220.56436 (10)1.1496 (3)0.84926 (9)0.0269 (4)
H1220.54291.16950.88500.032*
C1230.61157 (10)1.3197 (3)0.83817 (10)0.0304 (4)
H1230.62091.45550.86500.036*
C1240.64446 (10)1.2835 (3)0.78647 (10)0.0300 (4)
F1240.69271 (6)1.44882 (19)0.77655 (7)0.0435 (3)
C1250.63219 (10)1.0855 (3)0.74575 (10)0.0301 (4)
H1250.65601.06440.71190.036*
C1260.58359 (10)0.9183 (3)0.75626 (9)0.0260 (4)
H1260.57420.78390.72870.031*
P10.41707 (3)0.20397 (8)0.60526 (2)0.02624 (12)
O20.38648 (7)0.3996 (2)0.65108 (6)0.0262 (3)
O30.33653 (7)0.14447 (19)0.54070 (6)0.0269 (3)
O40.45712 (7)0.3839 (2)0.56752 (6)0.0293 (3)
C310.29181 (10)0.3271 (3)0.49448 (9)0.0270 (4)
H31A0.27170.42890.52270.032*
H31B0.24770.26010.45630.032*
C320.34018 (10)0.4681 (3)0.46065 (8)0.0247 (4)
C330.41052 (10)0.5660 (3)0.52151 (9)0.0272 (4)
H33A0.44260.65320.50080.033*
H33B0.39270.67100.55060.033*
C340.36634 (11)0.3186 (3)0.40960 (9)0.0338 (4)
H34A0.39740.19250.43620.051*
H34B0.39660.41050.38890.051*
H34C0.32140.25910.37170.051*
C350.29039 (12)0.6694 (3)0.41909 (10)0.0378 (5)
H35A0.31990.76010.39730.057*
H35B0.27540.76410.45180.057*
H35C0.24460.61050.38200.057*
U11U22U33U12U13U23
C10.0179 (8)0.0223 (8)0.0214 (8)0.0023 (6)0.0050 (6)0.0006 (6)
C20.0218 (8)0.0245 (9)0.0197 (8)0.0044 (6)0.0078 (7)0.0017 (6)
C30.0235 (9)0.0243 (9)0.0248 (8)0.0000 (7)0.0058 (7)−0.0044 (7)
C40.0251 (9)0.0240 (9)0.0352 (9)−0.0020 (7)0.0131 (8)0.0003 (7)
C50.0400 (11)0.0440 (12)0.0377 (10)−0.0083 (9)0.0223 (9)0.0023 (9)
C60.0566 (14)0.0693 (15)0.0318 (10)−0.0176 (12)0.0274 (10)−0.0035 (10)
C70.0543 (14)0.0670 (15)0.0287 (10)−0.0202 (11)0.0222 (10)−0.0149 (10)
C80.0366 (10)0.0438 (11)0.0280 (9)−0.0115 (9)0.0159 (8)−0.0094 (8)
C90.0196 (8)0.0301 (9)0.0223 (8)0.0024 (7)0.0074 (7)−0.0004 (7)
C100.0226 (8)0.0306 (9)0.0271 (8)0.0016 (7)0.0107 (7)0.0017 (7)
C110.0224 (8)0.0232 (8)0.0204 (8)0.0037 (6)0.0071 (7)−0.0005 (6)
N120.0220 (7)0.0263 (7)0.0241 (7)−0.0008 (6)0.0088 (6)−0.0031 (6)
C1210.0196 (8)0.0233 (8)0.0228 (8)0.0026 (6)0.0043 (7)−0.0005 (7)
C1220.0204 (8)0.0308 (10)0.0266 (9)0.0023 (7)0.0048 (7)−0.0056 (7)
C1230.0227 (9)0.0238 (9)0.0373 (10)0.0027 (7)0.0016 (8)−0.0044 (8)
C1240.0210 (9)0.0243 (9)0.0395 (10)−0.0016 (7)0.0042 (8)0.0083 (8)
F1240.0348 (6)0.0318 (6)0.0615 (8)−0.0075 (5)0.0142 (6)0.0086 (5)
C1250.0288 (9)0.0329 (10)0.0305 (9)0.0018 (8)0.0129 (8)0.0040 (8)
C1260.0280 (9)0.0239 (9)0.0255 (8)0.0009 (7)0.0089 (7)−0.0023 (7)
P10.0281 (2)0.0278 (2)0.0229 (2)0.00239 (19)0.00914 (18)−0.00166 (18)
O20.0367 (7)0.0246 (6)0.0189 (6)−0.0019 (5)0.0118 (5)−0.0021 (5)
O30.0337 (7)0.0223 (6)0.0239 (6)−0.0050 (5)0.0092 (5)−0.0029 (5)
O40.0225 (6)0.0387 (7)0.0270 (6)−0.0026 (5)0.0092 (5)−0.0019 (5)
C310.0238 (9)0.0315 (10)0.0237 (8)−0.0029 (7)0.0059 (7)−0.0029 (7)
C320.0289 (9)0.0258 (9)0.0202 (8)−0.0040 (7)0.0096 (7)−0.0042 (7)
C330.0311 (9)0.0284 (9)0.0245 (8)−0.0076 (7)0.0127 (7)−0.0031 (7)
C340.0400 (11)0.0401 (11)0.0238 (9)−0.0042 (9)0.0143 (8)−0.0083 (8)
C350.0477 (12)0.0330 (11)0.0294 (9)0.0014 (9)0.0096 (9)0.0016 (8)
C1—C21.386 (2)C123—C1241.376 (3)
C1—C91.442 (2)C123—H1230.9300
C1—C111.467 (2)C124—F1241.365 (2)
C2—O21.3843 (19)C124—C1251.372 (3)
C2—C31.407 (2)C125—C1261.382 (2)
C3—C41.359 (2)C125—H1250.9300
C3—H30.9300C126—H1260.9300
C4—C101.411 (2)P1—O41.6046 (13)
C4—H40.9300P1—O31.6096 (12)
C5—C61.360 (3)P1—O21.6678 (12)
C5—C101.417 (2)O3—C311.447 (2)
C5—H50.9300O4—C331.455 (2)
C6—C71.399 (3)C31—C321.525 (2)
C6—H60.9300C31—H31A0.9700
C7—C81.370 (3)C31—H31B0.9700
C7—H70.9300C32—C331.527 (2)
C8—C91.416 (2)C32—C351.528 (2)
C8—H80.9300C32—C341.531 (2)
C9—C101.427 (2)C33—H33A0.9700
C11—N121.275 (2)C33—H33B0.9700
C11—H110.9300C34—H34A0.9600
N12—C1211.416 (2)C34—H34B0.9600
C121—C1221.394 (2)C34—H34C0.9600
C121—C1261.398 (2)C35—H35A0.9600
C122—C1231.380 (2)C35—H35B0.9600
C122—H1220.9300C35—H35C0.9600
C2—C1—C9118.02 (15)F124—C124—C123118.63 (16)
C2—C1—C11117.04 (14)C125—C124—C123122.63 (17)
C9—C1—C11124.85 (14)C124—C125—C126118.48 (17)
O2—C2—C1118.08 (14)C124—C125—H125120.8
O2—C2—C3119.20 (14)C126—C125—H125120.8
C1—C2—C3122.71 (15)C125—C126—C121120.85 (16)
C4—C3—C2119.39 (16)C125—C126—H126119.6
C4—C3—H3120.3C121—C126—H126119.6
C2—C3—H3120.3O4—P1—O3102.37 (6)
C3—C4—C10121.18 (16)O4—P1—O296.35 (6)
C3—C4—H4119.4O3—P1—O2100.59 (6)
C10—C4—H4119.4C2—O2—P1121.02 (10)
C6—C5—C10121.11 (18)C31—O3—P1119.93 (10)
C6—C5—H5119.4C33—O4—P1119.75 (10)
C10—C5—H5119.4O3—C31—C32112.32 (13)
C5—C6—C7119.46 (18)O3—C31—H31A109.1
C5—C6—H6120.3C32—C31—H31A109.1
C7—C6—H6120.3O3—C31—H31B109.1
C8—C7—C6121.49 (19)C32—C31—H31B109.1
C8—C7—H7119.3H31A—C31—H31B107.9
C6—C7—H7119.3C31—C32—C33108.34 (13)
C7—C8—C9120.68 (18)C31—C32—C35108.27 (14)
C7—C8—H8119.7C33—C32—C35108.46 (14)
C9—C8—H8119.7C31—C32—C34110.82 (14)
C8—C9—C10117.75 (15)C33—C32—C34110.69 (14)
C8—C9—C1123.49 (16)C35—C32—C34110.18 (14)
C10—C9—C1118.76 (15)O4—C33—C32111.58 (13)
C4—C10—C5120.70 (17)O4—C33—H33A109.3
C4—C10—C9119.82 (15)C32—C33—H33A109.3
C5—C10—C9119.48 (16)O4—C33—H33B109.3
N12—C11—C1124.98 (15)C32—C33—H33B109.3
N12—C11—H11117.5H33A—C33—H33B108.0
C1—C11—H11117.5C32—C34—H34A109.5
C11—N12—C121117.67 (14)C32—C34—H34B109.5
C122—C121—C126118.57 (16)H34A—C34—H34B109.5
C122—C121—N12118.25 (15)C32—C34—H34C109.5
C126—C121—N12123.11 (15)H34A—C34—H34C109.5
C123—C122—C121120.98 (17)H34B—C34—H34C109.5
C123—C122—H122119.5C32—C35—H35A109.5
C121—C122—H122119.5C32—C35—H35B109.5
C124—C123—C122118.44 (16)H35A—C35—H35B109.5
C124—C123—H123120.8C32—C35—H35C109.5
C122—C123—H123120.8H35A—C35—H35C109.5
F124—C124—C125118.72 (17)H35B—C35—H35C109.5
C9—C1—C2—O2178.35 (14)C11—N12—C121—C126−41.1 (2)
C11—C1—C2—O2−4.8 (2)C126—C121—C122—C1232.4 (2)
C9—C1—C2—C3−1.5 (2)N12—C121—C122—C123179.62 (15)
C11—C1—C2—C3175.39 (14)C121—C122—C123—C124−1.9 (2)
O2—C2—C3—C4178.58 (15)C122—C123—C124—F124−178.44 (15)
C1—C2—C3—C4−1.6 (2)C122—C123—C124—C1250.0 (3)
C2—C3—C4—C102.8 (3)F124—C124—C125—C126179.69 (15)
C10—C5—C6—C71.0 (3)C123—C124—C125—C1261.3 (3)
C5—C6—C7—C8−1.5 (4)C124—C125—C126—C121−0.7 (3)
C6—C7—C8—C90.2 (3)C122—C121—C126—C125−1.1 (2)
C7—C8—C9—C101.6 (3)N12—C121—C126—C125−178.18 (15)
C7—C8—C9—C1−178.70 (19)C1—C2—O2—P1133.32 (13)
C2—C1—C9—C8−176.40 (16)C3—C2—O2—P1−46.84 (19)
C11—C1—C9—C87.0 (3)O4—P1—O2—C2−156.24 (12)
C2—C1—C9—C103.3 (2)O3—P1—O2—C299.87 (12)
C11—C1—C9—C10−173.29 (15)O4—P1—O3—C31−42.49 (13)
C3—C4—C10—C5178.69 (17)O2—P1—O3—C3156.49 (12)
C3—C4—C10—C9−0.9 (3)O3—P1—O4—C3343.33 (12)
C6—C5—C10—C4−178.77 (19)O2—P1—O4—C33−59.01 (12)
C6—C5—C10—C90.8 (3)P1—O3—C31—C3254.06 (17)
C8—C9—C10—C4177.50 (16)O3—C31—C32—C33−57.15 (18)
C1—C9—C10—C4−2.2 (2)O3—C31—C32—C35−174.59 (13)
C8—C9—C10—C5−2.1 (2)O3—C31—C32—C3464.47 (18)
C1—C9—C10—C5178.22 (16)P1—O4—C33—C32−55.56 (16)
C2—C1—C11—N12−160.05 (16)C31—C32—C33—O457.62 (18)
C9—C1—C11—N1216.6 (3)C35—C32—C33—O4174.93 (14)
C1—C11—N12—C121174.38 (14)C34—C32—C33—O4−64.08 (18)
C11—N12—C121—C122141.88 (16)
D—H···AD—HH···AD···AD—H···A
C4—H4···Cg1i0.932.703.456 (2)140
C35—H35C···Cg2ii0.962.943.878 (2)167
  4 in total

Review 1.  New features in pentacoordinate phosphorus chemistry.

Authors:  K C Kumara Swamy; N Satish Kumar
Journal:  Acc Chem Res       Date:  2006-05       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Biologically relevant phosphoranes: structural characterization of glucofuranose- and xylofuranose-based phosphoranes.

Authors:  Natalya V Timosheva; A Chandrasekaran; Robert R Holmes
Journal:  Inorg Chem       Date:  2006-04-03       Impact factor: 5.165

4.  Coordination chemistry of 4-methyl-2,6,7-trioxa-1-phosphabicyclo[2,2,1]heptane: preparation and characterization of Ru(II) complexes.

Authors:  Evan E Joslin; Claire L McMullin; T Brent Gunnoe; Thomas R Cundari; Michal Sabat; William H Myers
Journal:  Inorg Chem       Date:  2012-03-27       Impact factor: 5.165

  4 in total

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