| Literature DB >> 25705453 |
Thaiane Gregório1, André Luis Rüdiger1, Giovana G Nunes1, Jaísa F Soares1, David L Hughes2.
Abstract
The reaction of terbium(III) nitrate penta-hydrate in aceto-nitrile with N,N'-bis-(2-hy-droxy-benz-yl)-N,N'-bis-(pyridin-2-ylmeth-yl)ethyl-enedi-amine (H2bbpen), previously deprotonated with tri-ethyl-amine, produced the mononuclear compound [N,N'-bis-(2-oxidobenzyl-κO)-N,N'-bis-(pyridin-2-ylmethyl-κN)ethylenedi-amine-κ(2) N,N'](nitrato-κ(2) O,O')terbium(III), [Tb(C28H28N4O2)(NO3)]. The mol-ecule lies on a twofold rotation axis and the Tb(III) ion is eight-coordinate with a slightly distorted dodeca-hedral coordination geometry. In the symmetry-unique part of the mol-ecule, the pyridine and benzene rings are both essentially planar and form a dihedral angle of 61.42 (7)°. In the mol-ecular structure, the N4O4 coordination environment is defined by the hexa-dentate bbpen ligand and the bidentate nitrate anion. In the crystal, a weak C-H⋯O hydrogen bond links mol-ecules into a two-dimensional network parallel to (001).Entities:
Keywords: N,N′-bis(2-hydroxybenzyl)-N,N′-bis(pyridin-2-ylmethyl)ethylenediamine; crystal structure; dodecahedral.; lanthanide; mononuclear; terbium(III)
Year: 2015 PMID: 25705453 PMCID: PMC4331920 DOI: 10.1107/S2056989014026826
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of a molecule of [Tb(bbpen)(NO3)], indicating the atom-numbering scheme. H atoms have been omitted for clarity. Displacement ellipsoids are drawn at the 50% probability level [symmetry code: (i) −x + 1, y, −z + ].
Selected bond lengths ()
| Tb1O1 | 2.1947(13) | Tb1N3 | 2.5558(16) |
| Tb1O2 | 2.4764(15) | Tb1N1 | 2.891(2) |
| Tb1N2 | 2.5521(17) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| C8H8 | 0.99 | 2.37 | 3.338(3) | 166 |
Symmetry code: (ii) .
Figure 2A sheet of molecules, lying in a plane normal to the c axis, linked through short ‘weak hydrogen bonds’, as C8—H8B⋯O3ii [symmetry codes: (ii) x + , y + , z; (iii) x − , y − , z].
Experimental details
| Crystal data | |
| Chemical formula | [Tb(C28H28N4O2)(NO3)] |
|
| 673.47 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 8.5947(6), 18.2401(17), 16.9272(13) |
|
| 2653.6(4) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 2.71 |
| Crystal size (mm) | 0.43 0.20 0.20 |
| Data collection | |
| Diffractometer | Bruker D8 Venture/Photon 100 CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.581, 0.746 |
| No. of measured, independent and observed [ | 75009, 3320, 3289 |
|
| 0.020 |
| (sin /)max (1) | 0.668 |
| Refinement | |
|
| 0.010, 0.027, 1.15 |
| No. of reflections | 3320 |
| No. of parameters | 178 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.87, 0.30 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.0107(19) |
Computer programs: APEX2 and SAINT (Bruker, 2010 ▸), SHELXS97 and SHELXL2013 (Sheldrick, 2008 ▸), ORTEPII (Johnson, 1976 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸).
| [Tb(C28H28N4O2)(NO3)] | |
| Mo | |
| Orthorhombic, | Cell parameters from 9558 reflections |
| θ = 2.9–28.3° | |
| µ = 2.71 mm−1 | |
| Prism, pale pink | |
| 0.43 × 0.20 × 0.20 mm | |
| Bruker D8 Venture/Photon 100 CMOS diffractometer | 3320 independent reflections |
| Radiation source: fine-focus sealed tube | 3289 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 28.4°, θmin = 2.9° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 75009 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.004 | |
| Δρmax = 0.87 e Å−3 | |
| 3320 reflections | Δρmin = −0.30 e Å−3 |
| 178 parameters | Absolute structure: Flack |
| 0 restraints | Absolute structure parameter: −0.0107 (19) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Tb1 | 0.5000 | 0.51826 (2) | 0.2500 | 0.01172 (4) | |
| O1 | 0.59854 (16) | 0.54526 (8) | 0.13398 (8) | 0.0167 (3) | |
| O2 | 0.4357 (2) | 0.39605 (9) | 0.30473 (10) | 0.0312 (4) | |
| O3 | 0.5000 | 0.29285 (11) | 0.2500 | 0.0586 (9) | |
| N1 | 0.5000 | 0.35974 (11) | 0.2500 | 0.0293 (6) | |
| N2 | 0.7540 (2) | 0.49068 (9) | 0.32221 (10) | 0.0183 (3) | |
| N3 | 0.66305 (19) | 0.63257 (8) | 0.27777 (9) | 0.0130 (3) | |
| C1 | 0.8272 (3) | 0.42575 (12) | 0.32538 (14) | 0.0249 (4) | |
| H1 | 0.7809 | 0.3851 | 0.2993 | 0.030* | |
| C2 | 0.9672 (2) | 0.41490 (13) | 0.36483 (14) | 0.0275 (5) | |
| H2 | 1.0155 | 0.3681 | 0.3656 | 0.033* | |
| C3 | 1.0342 (2) | 0.47389 (13) | 0.40282 (14) | 0.0253 (5) | |
| H3 | 1.1304 | 0.4685 | 0.4298 | 0.030* | |
| C4 | 0.9590 (2) | 0.54124 (13) | 0.40111 (12) | 0.0203 (4) | |
| H4 | 1.0022 | 0.5823 | 0.4278 | 0.024* | |
| C5 | 0.8200 (2) | 0.54783 (11) | 0.35990 (10) | 0.0151 (3) | |
| C6 | 0.7349 (2) | 0.62034 (12) | 0.35643 (12) | 0.0160 (4) | |
| H6A | 0.6528 | 0.6212 | 0.3975 | 0.019* | |
| H6B | 0.8088 | 0.6606 | 0.3679 | 0.019* | |
| C7 | 0.5652 (2) | 0.69987 (10) | 0.28069 (12) | 0.0156 (3) | |
| H7A | 0.6323 | 0.7432 | 0.2719 | 0.019* | |
| H7B | 0.5190 | 0.7043 | 0.3340 | 0.019* | |
| C8 | 0.7933 (2) | 0.64051 (11) | 0.21953 (12) | 0.0162 (4) | |
| H8A | 0.8566 | 0.5952 | 0.2212 | 0.019* | |
| H8B | 0.8607 | 0.6814 | 0.2372 | 0.019* | |
| C9 | 0.7479 (2) | 0.65450 (12) | 0.13510 (12) | 0.0161 (4) | |
| C10 | 0.6559 (2) | 0.60220 (10) | 0.09514 (11) | 0.0155 (4) | |
| C11 | 0.6273 (2) | 0.61288 (12) | 0.01400 (12) | 0.0188 (4) | |
| H11 | 0.5663 | 0.5782 | −0.0142 | 0.023* | |
| C12 | 0.6873 (3) | 0.67359 (13) | −0.02515 (12) | 0.0232 (4) | |
| H12 | 0.6664 | 0.6801 | −0.0798 | 0.028* | |
| C13 | 0.7777 (3) | 0.72492 (13) | 0.01476 (14) | 0.0251 (4) | |
| H13 | 0.8186 | 0.7663 | −0.0123 | 0.030* | |
| C14 | 0.8073 (2) | 0.71496 (11) | 0.09491 (12) | 0.0199 (4) | |
| H14 | 0.8688 | 0.7498 | 0.1225 | 0.024* |
| Tb1 | 0.01260 (5) | 0.01031 (5) | 0.01225 (5) | 0.000 | 0.00008 (7) | 0.000 |
| O1 | 0.0177 (6) | 0.0180 (6) | 0.0145 (6) | −0.0021 (5) | 0.0023 (5) | −0.0009 (5) |
| O2 | 0.0439 (9) | 0.0209 (7) | 0.0287 (8) | −0.0086 (7) | −0.0077 (7) | 0.0083 (6) |
| O3 | 0.096 (2) | 0.0096 (8) | 0.0704 (19) | 0.000 | −0.046 (3) | 0.000 |
| N1 | 0.0418 (14) | 0.0119 (9) | 0.0343 (13) | 0.000 | −0.028 (2) | 0.000 |
| N2 | 0.0170 (8) | 0.0191 (8) | 0.0188 (8) | 0.0028 (7) | −0.0021 (6) | 0.0002 (6) |
| N3 | 0.0124 (7) | 0.0136 (7) | 0.0128 (6) | 0.0003 (6) | −0.0002 (5) | 0.0006 (5) |
| C1 | 0.0244 (10) | 0.0208 (10) | 0.0294 (11) | 0.0046 (8) | −0.0059 (9) | −0.0027 (8) |
| C2 | 0.0250 (14) | 0.0275 (10) | 0.0298 (10) | 0.0106 (8) | −0.0037 (8) | 0.0042 (8) |
| C3 | 0.0180 (13) | 0.0364 (11) | 0.0214 (9) | 0.0023 (8) | −0.0036 (7) | 0.0102 (8) |
| C4 | 0.0176 (11) | 0.0282 (10) | 0.0153 (8) | −0.0033 (7) | −0.0028 (6) | 0.0061 (8) |
| C5 | 0.0147 (8) | 0.0196 (9) | 0.0110 (8) | 0.0001 (7) | 0.0013 (6) | 0.0032 (7) |
| C6 | 0.0162 (9) | 0.0181 (9) | 0.0138 (9) | −0.0009 (8) | −0.0022 (7) | −0.0010 (8) |
| C7 | 0.0161 (8) | 0.0110 (8) | 0.0198 (8) | −0.0006 (7) | −0.0002 (7) | −0.0012 (7) |
| C8 | 0.0124 (8) | 0.0210 (9) | 0.0153 (8) | −0.0023 (7) | 0.0007 (7) | 0.0021 (7) |
| C9 | 0.0136 (9) | 0.0209 (10) | 0.0139 (9) | 0.0017 (8) | 0.0009 (7) | 0.0012 (8) |
| C10 | 0.0130 (8) | 0.0175 (9) | 0.0158 (8) | 0.0028 (7) | 0.0024 (7) | 0.0001 (7) |
| C11 | 0.0181 (9) | 0.0231 (10) | 0.0153 (9) | 0.0024 (8) | 0.0000 (7) | −0.0021 (8) |
| C12 | 0.0266 (11) | 0.0286 (11) | 0.0142 (9) | 0.0029 (9) | −0.0004 (8) | 0.0042 (8) |
| C13 | 0.0303 (11) | 0.0238 (10) | 0.0210 (11) | −0.0032 (9) | 0.0013 (9) | 0.0080 (8) |
| C14 | 0.0196 (9) | 0.0208 (9) | 0.0194 (10) | −0.0012 (8) | 0.0002 (8) | 0.0022 (8) |
| Tb1—O1i | 2.1947 (13) | C3—H3 | 0.9500 |
| Tb1—O1 | 2.1947 (13) | C4—C5 | 1.389 (3) |
| Tb1—O2i | 2.4764 (15) | C4—H4 | 0.9500 |
| Tb1—O2 | 2.4764 (15) | C5—C6 | 1.513 (3) |
| Tb1—N2i | 2.5521 (17) | C6—H6A | 0.9900 |
| Tb1—N2 | 2.5521 (17) | C6—H6B | 0.9900 |
| Tb1—N3i | 2.5558 (16) | C7—C7i | 1.529 (4) |
| Tb1—N3 | 2.5558 (16) | C7—H7A | 0.9900 |
| Tb1—N1 | 2.891 (2) | C7—H7B | 0.9900 |
| O1—C10 | 1.324 (2) | C8—C9 | 1.503 (3) |
| O2—N1 | 1.266 (2) | C8—H8A | 0.9900 |
| O3—N1 | 1.220 (3) | C8—H8B | 0.9900 |
| N1—O2i | 1.266 (2) | C9—C14 | 1.393 (3) |
| N2—C1 | 1.342 (3) | C9—C10 | 1.412 (3) |
| N2—C5 | 1.347 (3) | C10—C11 | 1.409 (3) |
| N3—C6 | 1.485 (2) | C11—C12 | 1.390 (3) |
| N3—C7 | 1.489 (2) | C11—H11 | 0.9500 |
| N3—C8 | 1.498 (2) | C12—C13 | 1.391 (3) |
| C1—C2 | 1.391 (3) | C12—H12 | 0.9500 |
| C1—H1 | 0.9500 | C13—C14 | 1.392 (3) |
| C2—C3 | 1.380 (3) | C13—H13 | 0.9500 |
| C2—H2 | 0.9500 | C14—H14 | 0.9500 |
| C3—C4 | 1.388 (3) | ||
| O1i—Tb1—O1 | 154.07 (7) | C8—N3—Tb1 | 111.56 (11) |
| O1i—Tb1—O2i | 128.52 (6) | N2—C1—C2 | 123.4 (2) |
| O1—Tb1—O2i | 77.36 (6) | N2—C1—H1 | 118.3 |
| O1i—Tb1—O2 | 77.36 (6) | C2—C1—H1 | 118.3 |
| O1—Tb1—O2 | 128.52 (6) | C3—C2—C1 | 118.3 (2) |
| O2i—Tb1—O2 | 51.64 (9) | C3—C2—H2 | 120.9 |
| O1i—Tb1—N2i | 98.20 (5) | C1—C2—H2 | 120.9 |
| O1—Tb1—N2i | 86.89 (5) | C2—C3—C4 | 119.11 (19) |
| O2i—Tb1—N2i | 80.45 (6) | C2—C3—H3 | 120.4 |
| O2—Tb1—N2i | 79.10 (6) | C4—C3—H3 | 120.4 |
| O1i—Tb1—N2 | 86.89 (5) | C3—C4—C5 | 119.2 (2) |
| O1—Tb1—N2 | 98.20 (5) | C3—C4—H4 | 120.4 |
| O2i—Tb1—N2 | 79.10 (6) | C5—C4—H4 | 120.4 |
| O2—Tb1—N2 | 80.45 (6) | N2—C5—C4 | 122.21 (19) |
| N2i—Tb1—N2 | 157.26 (8) | N2—C5—C6 | 117.05 (16) |
| O1i—Tb1—N3i | 76.70 (5) | C4—C5—C6 | 120.74 (19) |
| O1—Tb1—N3i | 82.18 (5) | N3—C6—C5 | 111.54 (16) |
| O2i—Tb1—N3i | 141.99 (5) | N3—C6—H6A | 109.3 |
| O2—Tb1—N3i | 132.91 (6) | C5—C6—H6A | 109.3 |
| N2i—Tb1—N3i | 66.65 (5) | N3—C6—H6B | 109.3 |
| N2—Tb1—N3i | 135.88 (5) | C5—C6—H6B | 109.3 |
| O1i—Tb1—N3 | 82.18 (5) | H6A—C6—H6B | 108.0 |
| O1—Tb1—N3 | 76.70 (5) | N3—C7—C7i | 113.05 (13) |
| O2i—Tb1—N3 | 132.91 (6) | N3—C7—H7A | 109.0 |
| O2—Tb1—N3 | 141.99 (5) | C7i—C7—H7A | 109.0 |
| N2i—Tb1—N3 | 135.88 (5) | N3—C7—H7B | 109.0 |
| N2—Tb1—N3 | 66.65 (5) | C7i—C7—H7B | 109.0 |
| N3i—Tb1—N3 | 70.67 (7) | H7A—C7—H7B | 107.8 |
| O1i—Tb1—N1 | 102.97 (4) | N3—C8—C9 | 116.63 (16) |
| O1—Tb1—N1 | 102.97 (4) | N3—C8—H8A | 108.1 |
| O2i—Tb1—N1 | 25.82 (4) | C9—C8—H8A | 108.1 |
| O2—Tb1—N1 | 25.82 (4) | N3—C8—H8B | 108.1 |
| N2i—Tb1—N1 | 78.63 (4) | C9—C8—H8B | 108.1 |
| N2—Tb1—N1 | 78.63 (4) | H8A—C8—H8B | 107.3 |
| N3i—Tb1—N1 | 144.67 (4) | C14—C9—C10 | 120.42 (18) |
| N3—Tb1—N1 | 144.67 (4) | C14—C9—C8 | 120.25 (19) |
| C10—O1—Tb1 | 139.80 (12) | C10—C9—C8 | 119.08 (19) |
| N1—O2—Tb1 | 95.73 (12) | O1—C10—C11 | 121.83 (18) |
| O3—N1—O2 | 121.55 (11) | O1—C10—C9 | 120.05 (17) |
| O3—N1—O2i | 121.55 (11) | C11—C10—C9 | 118.13 (18) |
| O2—N1—O2i | 116.9 (2) | C12—C11—C10 | 120.67 (19) |
| O3—N1—Tb1 | 180.0 | C12—C11—H11 | 119.7 |
| O2—N1—Tb1 | 58.45 (11) | C10—C11—H11 | 119.7 |
| O2i—N1—Tb1 | 58.45 (11) | C11—C12—C13 | 120.8 (2) |
| C1—N2—C5 | 117.83 (17) | C11—C12—H12 | 119.6 |
| C1—N2—Tb1 | 126.43 (14) | C13—C12—H12 | 119.6 |
| C5—N2—Tb1 | 115.74 (12) | C12—C13—C14 | 119.2 (2) |
| C6—N3—C7 | 109.19 (15) | C12—C13—H13 | 120.4 |
| C6—N3—C8 | 107.09 (15) | C14—C13—H13 | 120.4 |
| C7—N3—C8 | 111.34 (15) | C13—C14—C9 | 120.8 (2) |
| C6—N3—Tb1 | 105.69 (12) | C13—C14—H14 | 119.6 |
| C7—N3—Tb1 | 111.67 (11) | C9—C14—H14 | 119.6 |
| Tb1—O2—N1—O3 | 180.000 (1) | Tb1—N3—C7—C7i | −38.2 (2) |
| Tb1—O2—N1—O2i | 0.000 (1) | C6—N3—C8—C9 | −179.19 (19) |
| C5—N2—C1—C2 | −0.5 (3) | C7—N3—C8—C9 | −59.9 (2) |
| Tb1—N2—C1—C2 | 178.82 (17) | Tb1—N3—C8—C9 | 65.61 (19) |
| N2—C1—C2—C3 | 0.2 (4) | N3—C8—C9—C14 | 125.3 (2) |
| C1—C2—C3—C4 | 0.8 (3) | N3—C8—C9—C10 | −60.3 (3) |
| C2—C3—C4—C5 | −1.3 (3) | Tb1—O1—C10—C11 | −142.18 (16) |
| C1—N2—C5—C4 | 0.0 (3) | Tb1—O1—C10—C9 | 37.5 (3) |
| Tb1—N2—C5—C4 | −179.43 (14) | C14—C9—C10—O1 | −179.29 (18) |
| C1—N2—C5—C6 | −179.33 (18) | C8—C9—C10—O1 | 6.3 (3) |
| Tb1—N2—C5—C6 | 1.2 (2) | C14—C9—C10—C11 | 0.4 (3) |
| C3—C4—C5—N2 | 0.9 (3) | C8—C9—C10—C11 | −174.00 (18) |
| C3—C4—C5—C6 | −179.80 (18) | O1—C10—C11—C12 | 179.21 (19) |
| C7—N3—C6—C5 | 173.14 (16) | C9—C10—C11—C12 | −0.5 (3) |
| C8—N3—C6—C5 | −66.2 (2) | C10—C11—C12—C13 | 0.3 (3) |
| Tb1—N3—C6—C5 | 52.88 (17) | C11—C12—C13—C14 | −0.2 (4) |
| N2—C5—C6—N3 | −38.3 (2) | C12—C13—C14—C9 | 0.1 (3) |
| C4—C5—C6—N3 | 142.41 (18) | C10—C9—C14—C13 | −0.2 (3) |
| C6—N3—C7—C7i | −154.7 (2) | C8—C9—C14—C13 | 174.1 (2) |
| C8—N3—C7—C7i | 87.2 (2) |
| H··· | ||||
| C8—H8 | 0.99 | 2.37 | 3.338 (3) | 166 |