Literature DB >> 25704928

Proteopedia: Rossmann fold: A beta-alpha-beta fold at dinucleotide binding sites.

Israel Hanukoglu1.   

Abstract

The Rossmann fold is one of the most common and widely distributed super-secondary structures. It is composed of a series of alternating beta strand (β) and alpha helical (α) segments wherein the β-strands are hydrogen bonded forming a β-sheet. The initial beta-alpha-beta (βαβ) fold is the most conserved segment of Rossmann folds. As this segment is in contact with the ADP portion of dinucleotides such as FAD, NAD, and NADP it is also called as an "ADP-binding βαβ fold". The Proteopedia entry on the Rossmann fold (Available at: http://proteopedia.org/w/Rossmann_fold) was generated to illustrate several structural aspects of super families of FAD and NAD(P) binding proteins: (1) The coenzymes FAD and NAD(P) share the basic adenosine diphosphate (ADP) structure. (2) The βαβ fold motif that is common to both FAD and NAD(P) binding enzymes accommodates the common ADP component of these two coenzymes. (3) In both FAD and NAD(P) binding sites, the tight turn between the first β-strand and the α-helix is in contact with the two phosphate groups of ADP. (4) This hairpin curve includes the first two conserved glycines (Gly-x-Gly) that allow the sharp turn of the polypeptide backbone. (5) The two β-strands of the βαβ fold may constitute the core of a larger β-sheet that may include up to seven β-strands generally in parallel orientation. (6) The structures of segments between additional strands vary greatly and may be composed of a variety of structures such as multiple short helices or coils.
© 2015 International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  biochemical evolution; comparative biochemistry; enzymes and catalysis; molecular graphics and representations; protein design; protein structure function and folding

Mesh:

Substances:

Year:  2015        PMID: 25704928     DOI: 10.1002/bmb.20849

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  34 in total

Review 1.  PseudoGTPase domains in p190RhoGAP proteins: a mini-review.

Authors:  Amy L Stiegler; Titus J Boggon
Journal:  Biochem Soc Trans       Date:  2018-12-04       Impact factor: 5.407

2.  Structure of glycerol dehydrogenase (GldA) from Escherichia coli.

Authors:  Jun Zhang; Ankanahalli N Nanjaraj Urs; Lianyun Lin; Yan Zhou; Yiling Hu; Gaoqun Hua; Qiang Gao; Zhiguang Yuchi; Yan Zhang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-02-21       Impact factor: 1.056

3.  Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme.

Authors:  Israel Hanukoglu
Journal:  J Mol Evol       Date:  2017-11-24       Impact factor: 2.395

Review 4.  The molecular aspects of absorption and metabolism of carotenoids and retinoids in vertebrates.

Authors:  Made Airanthi K Widjaja-Adhi; Marcin Golczak
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2019-11-23       Impact factor: 4.698

5.  Crystal structures and biochemical analyses of the bacterial arginine dihydrolase ArgZ suggests a "bond rotation" catalytic mechanism.

Authors:  Ningning Zhuang; Hao Zhang; Lingting Li; Xiaoxian Wu; Chen Yang; Yu Zhang
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

6.  Crystal structure of gluconate 5-dehydrogenase from Lentibacter algarum.

Authors:  Dengke Tian; Xueqi Fu; Wenqiang Cao; Hong Yuan
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-04-29       Impact factor: 1.056

Review 7.  The emerging importance of METTL5-mediated ribosomal RNA methylation.

Authors:  Elena M Turkalj; Caroline Vissers
Journal:  Exp Mol Med       Date:  2022-10-21       Impact factor: 12.153

8.  Characterization and Inhibition of 1-Deoxy-d-Xylulose 5-Phosphate Reductoisomerase: A Promising Drug Target in Acinetobacter baumannii and Klebsiella pneumoniae.

Authors:  Haley S Ball; Misgina B Girma; Mosufa Zainab; Iswarduth Soojhawon; Robin D Couch; Schroeder M Noble
Journal:  ACS Infect Dis       Date:  2021-10-21       Impact factor: 5.578

Review 9.  Electron transfer flavoprotein and its role in mitochondrial energy metabolism in health and disease.

Authors:  Bárbara J Henriques; Rikke Katrine Jentoft Olsen; Cláudio M Gomes; Peter Bross
Journal:  Gene       Date:  2021-01-13       Impact factor: 3.688

10.  Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.).

Authors:  Amandeep Kaur; Shivi Tyagi; Kashmir Singh; Santosh Kumar Upadhyay
Journal:  Plant Cell Rep       Date:  2021-05-25       Impact factor: 4.570

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.