Literature DB >> 25689277

Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis.

Kerstin Neumann1, Christian Klukas1, Swetlana Friedel1,2, Pablo Rischbeck3, Dijun Chen1, Alexander Entzian1, Nils Stein1, Andreas Graner1, Benjamin Kilian1,4.   

Abstract

Phenotyping large numbers of genotypes still represents the rate-limiting step in many plant genetic experiments and in breeding. To address this issue, novel automated phenotyping technologies have been developed. We investigated for a core set of barley cultivars if high-throughput image analysis can help to dissect vegetative biomass accumulation in response to two different watering regimes under semi-controlled greenhouse conditions. We found that experiments, treatments, genotypes and genotype by environment interaction (G × E) can be characterized at any time point by certain digital traits. Biomass accumulation under control and stress conditions was highly heritable. Growth model-derived maximum vegetative biomass (K max), inflection point (I) and regrowth rate (k) were identified as promising candidate traits for genome-wide association studies. Drought stress symptoms can be visualized, dissected and modelled. Especially the highly heritable regrowth rate, which had the biggest influence on biomass accumulation in stress treatment, seems promising for future studies to improve drought tolerance in different crop species. A proof of concept study revealed potential correlations between digital traits obtained from pot experiments under greenhouse conditions and agronomic traits from field experiments. Overall, non-invasive, imaging-based phenotyping platforms under greenhouse conditions offer excellent possibilities for trait discovery, trait development and industrial applications.
© 2015 John Wiley & Sons Ltd.

Entities:  

Keywords:  drought; modelling; non-invasive phenotyping

Mesh:

Substances:

Year:  2015        PMID: 25689277     DOI: 10.1111/pce.12516

Source DB:  PubMed          Journal:  Plant Cell Environ        ISSN: 0140-7791            Impact factor:   7.228


  16 in total

1.  Predicting plant biomass accumulation from image-derived parameters.

Authors:  Dijun Chen; Rongli Shi; Jean-Michel Pape; Kerstin Neumann; Daniel Arend; Andreas Graner; Ming Chen; Christian Klukas
Journal:  Gigascience       Date:  2018-02-01       Impact factor: 6.524

2.  Bottlenecks and opportunities in field-based high-throughput phenotyping for heat and drought stress.

Authors:  Nathan T Hein; Ignacio A Ciampitti; S V Krishna Jagadish
Journal:  J Exp Bot       Date:  2021-07-10       Impact factor: 6.992

3.  Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses - a review.

Authors:  Jan F Humplík; Dušan Lazár; Alexandra Husičková; Lukáš Spíchal
Journal:  Plant Methods       Date:  2015-04-17       Impact factor: 4.993

4.  Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis.

Authors:  Kerstin Neumann; Yusheng Zhao; Jianting Chu; Jens Keilwagen; Jochen C Reif; Benjamin Kilian; Andreas Graner
Journal:  BMC Plant Biol       Date:  2017-08-10       Impact factor: 4.215

5.  Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses.

Authors:  Henning Tschiersch; Astrid Junker; Rhonda C Meyer; Thomas Altmann
Journal:  Plant Methods       Date:  2017-07-04       Impact factor: 4.993

6.  Differential coupling of gibberellin responses by Rht-B1c suppressor alleles and Rht-B1b in wheat highlights a unique role for the DELLA N-terminus in dormancy.

Authors:  Karel Van De Velde; Peter Michael Chandler; Dominique Van Der Straeten; Antje Rohde
Journal:  J Exp Bot       Date:  2017-01-01       Impact factor: 6.992

7.  Non-Invasive Phenotyping Reveals Genomic Regions Involved in Pre-Anthesis Drought Tolerance and Recovery in Spring Barley.

Authors:  Sidram Dhanagond; Guozheng Liu; Yusheng Zhao; Dijun Chen; Michele Grieco; Jochen Reif; Benjamin Kilian; Andreas Graner; Kerstin Neumann
Journal:  Front Plant Sci       Date:  2019-10-25       Impact factor: 5.753

8.  Advantages and limitations of multiple-trait genomic prediction for Fusarium head blight severity in hybrid wheat (Triticum aestivum L.).

Authors:  Albert W Schulthess; Yusheng Zhao; C Friedrich H Longin; Jochen C Reif
Journal:  Theor Appl Genet       Date:  2017-12-02       Impact factor: 5.699

9.  Digital Biomass Accumulation Using High-Throughput Plant Phenotype Data Analysis.

Authors:  Md Matiur Rahaman; Md Asif Ahsan; Zeeshan Gillani; Ming Chen
Journal:  J Integr Bioinform       Date:  2017-09-01

10.  Smoothing and extraction of traits in the growth analysis of noninvasive phenotypic data.

Authors:  Chris Brien; Nathaniel Jewell; Stephanie J Watts-Williams; Trevor Garnett; Bettina Berger
Journal:  Plant Methods       Date:  2020-03-10       Impact factor: 4.993

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