Literature DB >> 25684972

Deconvolution of High Dimensional Mixtures via Boosting, with Application to Diffusion-Weighted MRI of Human Brain.

Charles Y Zheng1, Franco Pestilli2, Ariel Rokem3.   

Abstract

Diffusion-weighted magnetic resonance imaging (DWI) and fiber tractography are the only methods to measure the structure of the white matter in the living human brain. The diffusion signal has been modelled as the combined contribution from many individual fascicles of nerve fibers passing through each location in the white matter. Typically, this is done via basis pursuit, but estimation of the exact directions is limited due to discretization [1, 2]. The difficulties inherent in modeling DWI data are shared by many other problems involving fitting non-parametric mixture models. Ekanadaham et al. [3] proposed an approach, continuous basis pursuit, to overcome discretization error in the 1-dimensional case (e.g., spike-sorting). Here, we propose a more general algorithm that fits mixture models of any dimensionality without discretization. Our algorithm uses the principles of L2-boost [4], together with refitting of the weights and pruning of the parameters. The addition of these steps to L2-boost both accelerates the algorithm and assures its accuracy. We refer to the resulting algorithm as elastic basis pursuit, or EBP, since it expands and contracts the active set of kernels as needed. We show that in contrast to existing approaches to fitting mixtures, our boosting framework (1) enables the selection of the optimal bias-variance tradeoff along the solution path, and (2) scales with high-dimensional problems. In simulations of DWI, we find that EBP yields better parameter estimates than a non-negative least squares (NNLS) approach, or the standard model used in DWI, the tensor model, which serves as the basis for diffusion tensor imaging (DTI) [5]. We demonstrate the utility of the method in DWI data acquired in parts of the brain containing crossings of multiple fascicles of nerve fibers.

Entities:  

Year:  2014        PMID: 25684972      PMCID: PMC4324561     

Source DB:  PubMed          Journal:  Adv Neural Inf Process Syst        ISSN: 1049-5258


  6 in total

1.  Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2007-02-21       Impact factor: 6.556

2.  A model-based deconvolution approach to solve fiber crossing in diffusion-weighted MR imaging.

Authors:  Flavio Dell'Acqua; Giovanna Rizzo; Paola Scifo; Rafael Alonso Clarke; Giuseppe Scotti; Ferruccio Fazio
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

3.  The Rician distribution of noisy MRI data.

Authors:  H Gudbjartsson; S Patz
Journal:  Magn Reson Med       Date:  1995-12       Impact factor: 4.668

4.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

5.  Recovery of sparse translation-invariant signals with continuous basis pursuit.

Authors:  Chaitanya Ekanadham; Daniel Tranchina; Eero Simoncelli
Journal:  IEEE Trans Signal Process       Date:  2011-10-01       Impact factor: 4.931

6.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

  6 in total
  1 in total

1.  Selection, Characterization, and Optimization of DNA Aptamers against Challenging Marine Biotoxin Gymnodimine-A for Biosensing Application.

Authors:  Xiaojuan Zhang; Yun Gao; Bowen Deng; Bo Hu; Luming Zhao; Han Guo; Chengfang Yang; Zhenxia Ma; Mingjuan Sun; Binghua Jiao; Lianghua Wang
Journal:  Toxins (Basel)       Date:  2022-03-05       Impact factor: 4.546

  1 in total

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