| Literature DB >> 25674046 |
Katrin Juenemann1, Anne Wiemhoefer1, Eric A Reits1.
Abstract
Protein conformation diseases, including polyglutamine (polyQ) diseases, result from the accumulation and aggregation of misfolded proteins. Huntington's disease (HD) is one of nine diseases caused by an expanded polyQ repeat within the affected protein and is hallmarked by intracellular inclusion bodies composed of aggregated N-terminal huntingtin (Htt) fragments and other sequestered proteins. Fluorescence microscopy and filter trap assay are conventional methods to study protein aggregates, but cannot be used to analyze the presence and levels of post-translational modifications of aggregated Htt such as ubiquitination. Ubiquitination of proteins can be a signal for degradation and intracellular localization, but also affects protein activity and protein-protein interactions. The function of ubiquitination relies on its mono- and polymeric isoforms attached to protein substrates. Studying the ubiquitination pattern of aggregated Htt fragments offers an important possibility to understand Htt degradation and aggregation processes within the cell. For the identification of aggregated Htt and its ubiquitinated species, solubilization of the cellular aggregates is mandatory. Here we describe methods to identify post-translational modifications such as ubiquitination of aggregated mutant Htt. This approach is specifically described for use with mammalian cell culture and is suitable to study other disease-related proteins prone to aggregate.Entities:
Keywords: Huntington’s disease; aggregation; formic acid; huntingtin; ubiquitination
Year: 2015 PMID: 25674046 PMCID: PMC4309157 DOI: 10.3389/fnmol.2015.00001
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 5.639
Figure 1Conventional methods to study Htt protein aggregates. (A) Scheme of the Htt-exon1 protein fragment. N-terminal region (aa 1-17) of wildtype Htt-exon1 with three lysine residues (K6, K9, K15) compared to the Htt mutant (3xR) containing three arginine residues (R6, R9, R15). (B) Aggregates of wildtype and 3xR mutant Htt-exon1. Transient co-transfection of Neuro-2a cells with the aggregation reporter Htt-exon1-25Q-GFP and wildtype or 3xR mutant Htt-exon1-97Q-H4 constructs. After 24 h cells were fixed and aggregates of Htt-exon1 co-sequestering the aggregation reporter Htt-exon1-25Q-GFP were detected by fluorescence of GFP. The nucleus was stained by 4’,6-diamidino-2-phenylindole (DAPI). Scale bar: 10 μm. (C) Western blot analysis and (D) filter trap assay (in doublets) of cell lysates from Neuro-2a cells transient transfected for 24 h with wildtype and 3xR mutant Htt-exon1-97Q-H4 constructs. Triton X-100-soluble Htt-exon1 proteins and insoluble Htt aggregates (asterisk) in the stacking gel were detected on immunoblots with HA antibody. β-actin was used as loading control. Filter trap assay was performed using an antibody against the HA-tag of Htt and an antibody against ubiquitin (Ub) recognizing ubiquitinated proteins.
Figure 2A stepwise protocol of SDS-soluble and SDS-insoluble cell fractionation.
Figure 3Detection of aggregated Htt and its ubiquitinated species. (A) SDS-insoluble fraction of Neuro-2a cell lysate after transient transfection of cells with wildtype or 3xR mutant Htt-exon1-97Q constructs. Formic acid-dissolved aggregates of Htt were detected on western blot by the Htt-specific antibodies 1C2 and N18. Formic acid soluble Htt-exon1 monomer (arrow) and a higher wildtype Htt-specific protein ladder, which is not detectable with 3xR mutant Htt, are shown. Remaining non-dissolved Htt aggregates were trapped in the stacking gel and recognized by the N18 antibody only. (B) Western blot analysis of the SDS-insoluble fraction of Neuro-2a cells transiently transfected with Htt-exon1-97Q-H4. In addition to the monomeric Htt-exon1-97Q-H4 protein a ubiquitin-positive Htt protein ladder (asterisks) is shown by the HA and ubiquitin (Ub) antibody, respectively. (C) Western blot analysis of the SDS-insoluble fraction of Neuro-2a cells transiently co-transfected with Htt-exon1-97Q and the ubiquitin constructs HA-Ub-wt and its lysine-dead mutant HA-Ub-K0, respectively. In addition to the monomeric Htt-exon1-97Q protein a ubiquitin-positive Htt protein ladder is shown by the 1C2 and Ub antibody, respectively. Lysine residue-dependent integration of HA-Ub-wt into the Htt-exon1 polyubiquitination chains is shown by an upward shift of the ubiquitin-modified Htt bands at the size of the ubiquitin N-terminal HA-tag (asterisks).
| 1x PBS: | 137 mM NaCl, 2.7 mM KCl, 4.3 mM Na2PO4, 1.4 mM KH2PO4, adjust to pH 7.4 |
| 1x TEX buffer: | 70 mM Tris/HCl pH 6.8, 1.5% SDS, 20% glycerol (store at RT) |
| 1x TEX buffer blue: | 70 mM Tris/HCl pH 6.8, 1.5% SDS, 20% glycerol, tip of a spatula of bromphenol blue (store at RT) |
| Concentrated bromphenol blue solution: | spatula-tip of bromphenol blue solved in water (store at RT) |