Mechanisms of group A Streptococcus resistance to reactive oxygen species.

Streptococcus pyogenes, also known as group A Streptococcus (GAS), is an exclusively human Gram-positive bacterial pathogen ranked among the 'top 10' causes of infection-related deaths worldwide. GAS commonly causes benign and self-limiting epithelial infections (pharyngitis and impetigo), and less frequent severe invasive diseases (bacteremia, toxic shock syndrome and necrotizing fasciitis). Annually, GAS causes 700 million infections, including 1.8 million invasive infections with a mortality rate of 25%. In order to establish an infection, GAS must counteract the oxidative stress conditions generated by the release of reactive oxygen species (ROS) at the infection site by host immune cells such as neutrophils and monocytes. ROS are the highly reactive and toxic byproducts of oxygen metabolism, including hydrogen peroxide (H2O2), superoxide anion (O2•(-)), hydroxyl radicals (OH•) and singlet oxygen (O2*), which can damage bacterial nucleic acids, proteins and cell membranes. This review summarizes the enzymatic and regulatory mechanisms utilized by GAS to thwart ROS and survive under conditions of oxidative stress. © FEMS 2015.

INTRODUCTION

Reactive oxygen species (ROS) are highly reactive oxygen-containing molecules such as oxygen ions and peroxide generated from the metabolism of oxygen. Exogenous ROS can be formed following exposure to physical or chemical agents such as ionizing radiation (Dainton 1948), ultraviolet (UV) radiation (Jurkiewicz and Buettner 1994), mitomycin C (Tomasz 1976) or desiccation (Potts 1994). Depending on the setting, and the concentration, ROS can be either essential for, or detrimental to, cellular survival. ROS is required for mammalian cell survival, growth, proliferation and differentiation (Droge 2002), notably through its role in intracellular signaling (Finkel 1998; Rhee 1999); however, ROS can also be highly injurious to cells, causing damage to proteins and DNA (Brawn and Fridovich 1981), provoking lipid peroxidation (Niki 2009) or oxidizing enzyme cofactors. ROS play a role in the development of a number of human diseases, including chronic inflammation, age-related disorders and cancers (Liou and Storz 2010). Host phagocytic cells, primarily neutrophils and monocytes generate endogenous ROS to facilitate clearance of bacteria at the infection site.

Bacterial cells synthesize a number of enzymes to detoxify ROS, including alpha-1-microglobulin (Olsson et al., 2012), superoxide dismutases (Sods) (Lynch and Kuramitsu 2000), catalases (Mishra and Imlay 2012), glutathione peroxidases (Moore and Sparling 1995) and peroxiredoxins (generally referred to as AhpC in bacteria) (Poole 2005; Dubbs and Mongkolsuk 2007). Antioxidants, including ascorbic acid (vitamin C), tocopherol (vitamin E), uric acid and glutathione, enhance resistance to oxidative stress. Reactive nitrogen species (RNS) are another group of antimicrobials produced by certain immune cells, resulting in nitrosative stress. RNS are most often derived from nitric oxide and superoxide. Like ROS, RNS have diverse functions within the host, and the importance of RNS in health and disease has been reviewed elsewhere (Nathan and Shiloh 2000; Fang 2004) and is not a focus of this review.

Bacterial pathogens such as Streptococcus pyogenes, also known as group A Streptococcus (GAS), encounter ROS during the innate immune response driven by host phagocytic cells. GAS is a Gram-positive facultative anaerobe, currently listed as a ‘top 10’ human pathogen, responsible for 700 million infections annually (Carapetis et al., 2005). Of these infections, 1.8 million are severe invasive infections (bacteremia, toxic shock syndrome and necrotizing fasciitis) with a mortality rate of 25%. The remaining infections caused by GAS are benign and self-limiting and include pharyngitis and impetigo (Walker et al., 2014). Currently, there is no safe and efficacious vaccine to protect against GAS infection (Henningham, Gillen and Walker 2013). A better understanding of GAS pathogenesis and the complex interplay between GAS and host proteins, molecules and tissues, may lead to the development of novel therapeutic agents or effective vaccines. One group of host defense factors of particular interest in this regard is ROS. GAS encounters ROS at various stages of infection, and consequently GAS are well equipped to deal with oxidative stress and express an array of proteins and virulence factors to survive under these harsh conditions. In contrast to the human pathogen Staphylococcus aureus, which produces a similar spectrum of skin and invasive infections, GAS lack catalase, a heme-containing peroxidase that degrades hydrogen peroxide (H2O2) to H2O and oxygen (O2), and do not express an antioxidant carotenoid pigment to withstand ROS-mediated killing (Liu et al., 2005). Despite this, GAS can tolerate the high oxygen concentrations within the human host and has evolved multiple mechanisms to resist the toxic effects of ROS produced from the reduction of atmospheric oxygen or the activation of host phagocytic cells (Table 1). Two fundamental mechanisms are employed by GAS to counter ROS: 1) suppression of ROS (indirect), and 2) expression of enzymes to detoxify ROS (direct). This review focuses on the ROS resistance mechanisms of GAS including the expression of surface-associated ROS resistance factors, intracellular and secreted enzymes involved in ROS detoxification or repair of ROS-damaged proteins, metal transporters important for metal ion homeostasis and oxidative stress resistance, and the transcription factors involved in the coordinated regulation of gene expression for GAS survival under conditions of oxidative stress.

Table 1.

Resistance mechanisms employed by GAS to thwart ROS.

Resistance mechanism	GAS factor	Function
Surface/secreted protein	M protein	Impaired fusion of azurophilic granules with phagolysosome
	HA capsule	H2O2 resistance by aggregation
	Mac-1	Reduced phagocytosis and ROS production
	Mac-2	Reduced phagocytosis and ROS production
Enzymatic detoxification	SodA	Superoxide resistance
	AhpC	H2O2 resistance
	GpoA	Superoxide resistance
	NoxA	Superoxide resistance and H2O2 resistance
Enzymatic repair	HtrA	Protein repair upon ROS damage
	PolA1	DNA repair upon ROS damage, H2O2 resistance and inhibition of Fenton reaction
Metal ion binding	PmtA	Metal transporter and H2O2 resistance
	Dpr	Iron sequestration and H2O2 resistance
	MtsABC	Metal transporter, superoxide and H2O2 resistance, inhibition of Fenton reaction
	Shr	Iron sequestration and H2O2 resistance

BIOLOGICAL ROLES OF ROS

ROS are generated during the metabolism of O2 and consist of highly toxic and reactive oxygen-containing molecules such as peroxide and oxygen ions. ROS are produced either via the transfer of electrons to O2, leading to the production of superoxide (O2•−), H2O2 and highly reactive hydroxyl radicals (OH•), or via the transfer of energy to O2, which leads to the formation of singlet oxygen (O2*) (Yesilkaya et al., 2013). Superoxide damages proteins by oxidizing iron–sulfur clusters within enzymes (Kuo, Mashino and Fridovich 1987; Flint, Tuminello and Emptage 1993). The membrane-permeable H2O2 can target sulfur atoms in cysteine (Winterbourn and Metodiewa 1999) or methionine residues in proteins (Griffiths and Cooney 2002), and cause oxidative damage to cell membranes or nucleic acids (Gabbianelli et al., 1998). Highly reactive singlet oxygen reacts with proteins, lipids, DNA and RNA (Glaeser et al., 2011). Hydroxyl radicals are formed during the Fenton reaction in which H2O2 is converted to OH• in the presence of metal ions [H2O2 + Fe(II) → OH• + OH− + Fe(III)]. The highly reactive OH• targets DNA, attacking deoxyribose residues resulting in nicks in double-stranded DNA which can compromise chromosome fidelity and ultimately lead to cell death (Imlay, Chin and Linn 1988; Rai et al., 2001). Carbonylated proteins are an additional and irreversible byproduct of metal-catalyzed oxidative stress (Amici et al., 1989; Dalle-Donne et al., 2006). Carbonylation often results in loss of protein function and is further reviewed in Dalle-Donne et al. (2006). Heavily carbonylated proteins can form aggregates, are resistant to proteasomal degradation and are thought to be associated with certain neurodegenerative disorders (Dalle-Donne et al., 2006). ROS also plays a role in the activation of the inflammasome, an important arm of the innate immune defense, whereby pattern-recognition receptors on host cells identify danger to the host, via recognition of pathogen-associated molecular patterns from microbes and damage-associated molecular patterns released from injured tissue (Bauernfeind and Hornung 2013). The most studied inflammasome is the Nod-like receptor (NLR) family, pyrin domain-containing 3 (NLRP3). The production of ROS is an important upstream event of NLRP3 activation (Tschopp and Schroder 2010). ROS have diverse roles within the host, participating in biological processes including cellular signaling, chemotaxis, antigen cross-presentation, autophagy, mammalian cell growth, proliferation and differentiation, and the adaptive immune response, which have been reviewed elsewhere (Thannickal and Fanburg 2000; Droge 2002; Lam, Huang and Brumell 2010; Yang et al., 2013).

IMMUNE CELLS THAT GENERATE ROS

It has been long established that during phagocytosis of microbes, phagocytes such as neutrophils and monocytes exhibit increased O2 consumption (Sbarra and Karnovsky 1959; Iyer, Islam and Quastel 1961; Rossi and Zatti 1964). This phenomenon is known as respiratory or oxidative burst and is a very important component of innate immunity and the host defense against microbes. A synergy between myeloperoxidase (MPO) (contained within neutrophil azurophilic granules released into the phagosome during the degranulation process), H2O2 produced by neutrophils, and a halide, often chloride (Fig. 1), results in intracellular killing of Gram-positive and Gram-negative bacterial species (McRipley and Sbarra 1967; Klebanoff 2005). GAS is naturally deficient in catalase and carotenoid pigment expressed by other Gram-positive bacteria such as Bacillus spp. (Zuber 2009) and S. aureus (Liu et al., 2005), and may be a susceptible target to oxidative burst killing initiated by host cells (Kwinn and Nizet 2007). Specifically, leukocytes release ROS O2•− and H2O2 into the intracellular milieu through the assembly of membrane-bound nicotinamide adenine dinucleotide phosphate (NADH) oxidase 2 (NOX2) on the phagosomal membrane following phagocytosis (Babior, Kipnes and Curnutte 1973; DeLeo et al., 1999; Nauseef 2004). ROS is also generated by the terminal enzyme of purine catabolism, xanthine oxidase (Harrison 2002), the electron transport chain within mitochondria (Murphy 2009; Santos et al., 2009), peroxisomes (Antonenkov et al., 2010) and the endoplasmic reticulum (Santos et al., 2009). There are seven known members of the NOX family, NOX1–5 and DUOX1–2 (Lam, Huang and Brumell 2010), with NOX2 producing the greatest amount of ROS in human tissues. The O2•− and H2O2 produced by NOX2 are subsequently converted to oxidizing radicals (such as OH•) and oxidizing halogens (e.g. hypochlorite, ClO−), both of which are powerful microbicidal agents (Babior 1984). The generation of ROS by NOX mediates the formation of neutrophil extracellular traps (NETs) (Fuchs et al., 2007; Bianchi et al., 2009). NETs are released from activated neutrophils and comprise a mixture of granule proteins, antimicrobial peptides and nuclear constituents such as chromatin and histones that combine to form extracellular fibers capable of trapping and killing bacteria (Brinkmann et al., 2004). Therefore, bacteria including GAS have evolved strategies not only to reduce ROS production, but also to further inhibit the generation of NETs and innate immune clearance. GAS resistance to lethal doses of H2O2 can be induced in vitro by growth in the presence of oxygen (Ricci, Janulczyk and Bjorck 2002), 5% ethanol (King, Horenstein and Caparon 2000) or sub-lethal concentrations of H2O2 (King, Horenstein and Caparon 2000).

Figure 1.

Generation of reactive oxygen intermediates (light blue) by enzymes in human neutrophils (dark blue) upon phagocytosis, and the enzymatic detoxification mechanisms utilized by GAS bacteria (orange). Oxygen (O2) can be converted to superoxide (O2•−) following the activation of NOX in neutrophils. Superoxide may be converted to H2O2 by the GAS enzyme SodA. Both superoxide and hydrogen peroxide may be converted to hydroxyl radicals (OH•) during the Fenton reaction. Bacteria express iron chelators and transporters to maintain iron homeostasis and prevent the formation of bactericidal hydroxyl radicals. The neutrophil enzyme MPO catalyzes the production of bactericidal HOCl from H2O2 and Cl− during the oxidative burst. Hydrogen peroxide can be detoxified to water by the enzyme Gpo, AhpC or NoxA. Following the gain of an electron, hydroxyl radicals can be converted to water. Abbreviations: O2, oxygen; O2•−, superoxide; NOX, NADH oxidase; H2O2, hydrogen peroxide; SodA, superoxide dismutase; OH•, hydroxyl radicals; MPO, myeloperoxidase; HOCl, hypochlorous acid; Cl−, chloride anion; GpoA, glutathione peroxidase; AhpC, alkyl hydroperoxidase; NoxA, NADH oxidase A reductase.

GAS PRODUCES ROS

Certain, but not all, GAS strains are H2O2 producers when cultured under anaerobic conditions (Saito et al., 2001). Agar-based techniques, involving the Prussian blue forming reaction, have been developed to differentiate H2O2 producing from non-producing GAS isolates (Saito et al., 2007). The GAS enzymes lactate oxidase (Seki et al., 2004; Kietzman and Caparon 2010) and NOX (Gibson et al., 2000) are responsible for the secretion of up to millimolar concentrations of H2O2 into the extracellular milieu (Malke et al., 1974; Cleary and Larkin 1979; Gibson et al., 2000; Saito et al., 2001). The reason why GAS generates peroxide is not fully understood. The H2O2 produced by H2O2-producing GAS may function to kill other bacterial species in order to help establish infections, as is the case for Streptococcus pneumoniae (Pericone et al., 2000) and commensal Lactobacillus spp. (Aroutcheva et al., 2001). In invertebrate models of GAS pathogenesis, GAS production of H2O2 resulted in the death of Caenorhabditis elegans (Jansen et al., 2002; Bolm et al., 2004). However, not all GAS isolates causing disease, be it severe or mild, produce H2O2, and in a study determining H2O2 production (25 of the 46 clinical strains examined accumulated H2O2 in the growth medium) there was no correlation between disease state and a H2O2-producing phenotype (Saito et al., 2001). In this study, non-H2O2-producing strains were found to be resistant to in vitro killing by phagocytes isolated from patients with chronic granulomatous disease (CGD), and in vivo subcutaneous injection of H2O2 non-producing strains resulted in a greater swelling in CGD mice footpads, accompanied by a higher mortality rate, compared to the H2O2-producing strains (Saito et al., 2001).

GAS INDUCES ROS

GAS, like other nasopharyngeal pathogens, is exposed to a range of O2 concentrations during the infection process, encountering 20% O2 on the nasopharynx, 5% O2 in the lower respiratory tract and virtually anaerobic conditions in blood (Yesilkaya et al., 2013). During contact with host innate immune cells such as leukocytes and macrophages, GAS induces ROS. In turn, the action of the ROS can result in host cell injury and/or death. For instance, following the production of H2O2 by host neutrophils, a synergistic interaction between a secreted GAS hemolysin, streptolysin S (SLS) and H2O2 results in injury to vascular endothelial cells (Ginsburg et al., 1989; Ginsburg and Varani 1993). ROS induced by GAS invasion has also been shown to trigger apoptosis of infected epithelial cells due to mitochondrial dysfunction (Aikawa et al., 2010). Specifically, ROS was produced following activation of the GTPase Rac1 (Aikawa et al., 2010), previously reported to mediate ROS production (Suzukawa et al., 2000).

SURFACE MOLECULES INVOLVED IN THE OXIDATIVE STRESS DEFENSE OF GAS

One factor contributing to the success of GAS as a human pathogen is its ability to evade and/or defend against the host innate immune response. One such defense mechanism is oxidative stress resistance, for which GAS contain an orchestrated repertoire of surface proteins and polysaccharides to counter the ROS produced by host cells (Table 1).

M protein

GAS strains are distinguished serologically on the basis of immunovariable surface-anchored M proteins (Facklam et al., 1999). The M protein is a vaccine antigen and major virulence factor of GAS, which affects adherence and invasion to host cells via interaction with multiple host proteins including fibrinogen (Smeesters, McMillan and Sriprakash 2010; Ghosh 2011; Anderson et al., 2014), and inhibits phagocytosis of GAS to overcome innate immunity (Smeesters, McMillan and Sriprakash 2010). There are four known types of granules within neutrophils, the two major granules are the primary (azurophilic) and secondary (specific) granules (Pham 2006). Azurophilic granules contain MPO, and play an active role in the digestion of phagocytosed material, while specific granules are secretory and take part in initiation of the host inflammatory response (Borregaard and Cowland 1997). Live wild-type GAS (expressing M and M-like proteins), after internalization by human neutrophils, increased oxidative burst (specifically H2O2 production) and membrane traffic responses compared to mutants lacking M protein, specifically via inhibition of the fusion of azurophilic granules with phagosomes (Staali et al., 2006). This is an additional M protein-mediated mechanism of GAS evasion of the host immune system, even once entrapped within phagosomes. Conversely, M1 protein spontaneously released from the surface of GAS or after enzymatic cleavage activates neutrophils as determined by release of heparin-binding protein (Herwald et al., 2004; Macheboeuf et al., 2011). Moreover, M1 protein triggers the release of MPO from neutrophils mediating lung damage (Soehnlein et al., 2008). Additionally, surface-released M1 protein forms a pathological network with fibrinogen, which circulates in high concentrations in human blood (Macheboeuf et al., 2011). This complex contributes to lung damage and inflammation, a condition characterized by high ROS levels (Herwald et al., 2004; Soehnlein et al., 2008; Macheboeuf et al., 2011). Consequently, these findings suggest that the M1 protein released from GAS cell surface may contribute to induction of ROS production; however, further research is required to corroborate the link between M protein and ROS induction (Allen and Stephens 2011).

Hyaluronan capsule

The surface capsule of GAS is composed solely of hyaluronan (HA); a high-molecular-mass polysaccharide comprised of glucuronic acid and N-acetylglucosamine (Kendall, Heidelberger and Dawson 1937). The GAS capsule is structurally identical to the HA widely distributed throughout human tissues, allowing GAS to mimic host structures and thwart detection by the host immune system. The capsule promotes GAS survival by obstructing antibody binding to epitopes on the bacterial surface, complement deposition (Dale et al., 1996) and opsonophagocytosis (Foley and Wood 1959; Dale et al., 1996). The capsule of GAS has also been reported to contribute to resistance against H2O2. Encapsulated strains grow in aggregates, taking up oxygen at a slower rate than non-encapsulated derivative strains (Cleary and Larkin 1979). HA capsule-mediated aggregation is thought to mechanically shield GAS from destruction by oxygen metabolites such as H2O2 (Cleary and Larkin 1979).

GAS Mac-1-like protein (Mac-1/IdeS)

Following a proteomic analysis of GAS culture supernatants, a secreted protein with homology to the α-subunit of human Mac-1, designated the GAS Mac-1-like protein (Mac-1, also known as IdeS), was discovered. Human Mac-1, also known as CDIIb or CD18, is a leukocyte adhesion glycoprotein functioning in cell–cell and cell–substrate adhesive interactions including binding complement product iC3b (Corbi et al., 1988). Consequently, human Mac-1 plays a role in regulating leukocyte migration, phagocytosis and oxidative killing. GAS Mac-1 is thought to function through molecular mimicry by binding CD16 on the surface of neutrophils, consequently inhibiting opsonophagocytosis and production of ROS (Lei et al., 2001). Lei and colleagues further concluded that Mac-1 prevents any receptor–antibody interaction, i.e. activation by IgG binding as an immune suppression strategy by GAS (Lei et al., 2001). In addition, recombinant Mac-1-mediated proteolytic cleavage of the hinge region of IgG is hypothesized to prevent the recognition of antibody-opsonized GAS by Fc receptors of immune cells and by the complement system (von Pawel-Rammingen et al., 2002). During studies utilizing recombinant Mac-1 incubated with serum containing anti-GAS antibodies, subsequent proteolytic degradation inhibited ROS production by human neutrophils (Lei et al., 2001; Söderberg and von Pawel-Rammingen 2008). However, a study comparing a Mac-1-deficient mutant GAS strain to the wild-type and complemented strains demonstrated that native Mac-1 expressed by live GAS does not reduce ROS production or other neutrophil functions (Okumura et al., 2013).

Mac-2

A second Mac-1-like protein has been identified, designated Mac-2 (Lei et al., 2002a). Previously, Mac-2 has been reported to interfere with opsonophagocytosis by blocking Fcγ receptors on phagocytic cells (Agniswamy et al., 2004). In initial studies, Mac-2 did not inhibit ROS production by neutrophils stimulated with IgG-coated latex beads (Lei et al., 2002a). Subsequent studies measuring immunocomplex-induced oxidative burst in whole blood containing recombinant Mac-2 indicated that Mac-2 contributes to the inhibition of opsonophagocytosis-induced ROS production ex vivo. However, this inhibition did not enhance streptococcal survival in bactericidal assays (Söderberg, Engström and von Pawel-Rammingen 2008).

ENZYMATIC DETOXIFICATION MECHANISMS

GAS is a facultative anaerobic organism that generates energy from glycolysis due to a deficiency in heme-containing protein complexes for oxidative phosphorylation. The growth kinetics of this aerotolerant pathogen are substantially enhanced in the presence of oxygen (Gabbianelli et al., 1998). GAS is a member of the lactic acid bacteria family and naturally lacks catalase, a heme-containing peroxidase and highly efficient H2O2-detoxification enzyme expressed by numerous other bacterial species to survive in aerobic environments. Nevertheless, GAS persists in oxygen-rich anatomical sites of the human host, and has evolved effective strategies to combat bactericidal H2O2 and other ROS generated by host innate immune cells, such as neutrophils and macrophages, at the site of infection (Gibson et al., 2000). The GAS genome harbors peroxidases, Sod and NADH oxidase to directly decompose ROS (Gibson and Caparon 1996; Gerlach, Reichardt and Vettermann 1998; Gibson et al., 2000; King, Horenstein and Caparon 2000). Indirect ROS resistance mechanisms comprise proteins involved in the repair of ROS-damaged biomolecules (e.g. DNA or proteins) or metal ion transporters involved in maintaining metal homeostasis and oxidative stress resistance (Table 1). Next, we highlight conserved ROS defense mechanisms employed by multiple serotypes of GAS (Fig. 2).

Figure 2.

The GAS proteins involved in oxidative stress resistance. Several surface-associated GAS molecules play a role in ROS suppression: M protein impairs azurophilic granule fusion with the phagolysosome in host neutrophils; HA capsular polysaccharide promotes bacterial clumping and enhances H2O2 resistance; recombinant Mac-1/IdeS binds CD16 on neutrophils inhibiting phagocytosis and ROS production; and Mac-2 binds neutrophil FCγ receptors to inhibit phagocytosis and ROS production. Enzymes involved in superoxide detoxification include NoxA/NOXase, SodA and AhpC. GpoA plays a role in cellular redox homeostasis and protects cells from the deleterious effects of ROS. Chaperone protein HtrA/DegP and DNA polymerase PolA1 function to repair protein or DNA damaged by ROS, respectively. Cation homeostasis, important for oxidative stress resistance, is regulated by several GAS proteins: PmtA, an iron efflux system important for H2O2 resistance; MtsABC, involved Fe3+, Zn2+ and Mn2+ transport and required for enhanced resistance to superoxide and H2O2; Shr, a surface-associated heme receptor involved in iron sequestration and H2O2 resistance; and Dpr/MrgA, plays a pivotal role in resistance to oxidant stress by functioning as an iron (Fe2+) chelator and preventing the production of bactericidal hydroxyl radicals via the Fenton reaction. Abbreviations: ROS, reactive oxygen species; HA, hyaluronan; Mac-1/IdeS, Mac-1-like protein; NoxA/NOXase, NADH oxidase A; SodA, superoxide dismutase; AhpC, alkyl hydroperoxidase reductase C; GpoA, glutothione peroxidase; HtrA/DegP, high-temperature requirement A; PolA1, DNA polymerase I; PmtA, PerR-regulated metal transporter A; MtsABC, metal transporter of Streptococcus ABC; Shr, streptococcal hemoprotein receptor; Dpr/MrgA, Dps-like peroxide resistance protein.

Superoxide dismutase A (SodA)

Sod represents the first line of bacterial defense against superoxide stress by converting O2•− into H2O2 and O2, thereby protecting cells from the toxic effects of superoxide (Fridovich 1997; Liochev and Fridovich 2007). Sods are distinguished by their metal cofactors, which are ferrous (Fe3+), manganese (Mn2+), nickel (Ni2+) or copper/zinc (Cu2+/Zn2+). Escherichia coli has three Sods cofactored with Cu2+/Zn2+ (periplasm), Mn2+ or Fe3+ (both cytoplasmic). GAS Sods are highly conserved among different serotypes as well as highly homologous to Sods from other Gram-positive bacteria (Gerlach, Reichardt and Vettermann 1998; Poyart et al., 1998). GAS has a single Mn2+-dependent superoxide dismutase, designated SodA, which enhances GAS growth under aerobic conditions (Gibson and Caparon 1996). The H2O2 generated by SodA is neutralized by endogenous GAS peroxidases (Gerlach, Reichardt and Vettermann 1998). A sodA mutant in serotype M14 GAS strain HSC5 (Port, Paluscio and Caparon 2013) is more susceptible to superoxide challenge (Gibson and Caparon 1996). E. coli mutants deficient in the periplasmic Cu2+/Zn2+ Sod are more susceptible to H2O2, but exhibit equivalent sensitivity towards superoxide challenge (Gort, Ferber and Imlay 1999). Additionally, heterologous expression of SodA from Streptococcus thermophilus strain AO45 in four otherwise SodA-negative lactobacilli promoted bacterial survival after challenge with various concentrations of H2O2 up to 1.6 mM. Treatment of Lactobacillus gasseri engineered to express SodA in the presence of an iron chelator, 2′-2′-dipyridyl (DIP) was protective following lethal challenge with 2.5 mM H2O2. This phenotype was attributed to inhibition of the Fenton reaction, which is downstream of H2O2 formation (Bruno-Barcena et al., 2004). Extracellular SodA derived from various GAS clinical isolates and reference strains failed to provoke an efficient immune response (McMillan et al., 2004); however, secretion of SodA from serotype M12 GAS strain 12714 into the extracellular milieu protects against the extracellular ROS produced by innate immune cells (Fig. 2) (Gerlach, Reichardt and Vettermann 1998). SodA might be indirectly regulated by the peroxide response regulator (PerR) in GAS as PerR does not bind to the SodA promoter directly, but perR mutants in serotype M1 GAS strain AP1 have lower transcript levels of SodA (Ricci, Janulczyk and Bjorck 2002). In response to superoxide, both SodA and the cell surface adhesin fibronectin-binding protein F (PrtF, also known as Sfb) are transcriptionally up-regulated (Gibson et al., 1995; Gibson and Caparon 1996). Furthermore, PrtF is transcriptionally regulated in response to oxygen concentration (VanHeyningen et al., 1993).

Alkyl hydroperoxide reductase (AhpC)

Using a genome-wide screen for peroxidase-related genes in GAS, King and colleagues identified two genes, alkyl hydroperoxide reductase (ahpC) and glutathione peroxidase (gpoA), which inactivate inorganic and organic peroxides and thereby enhance GAS resistance to ROS (King, Horenstein and Caparon 2000; Brenot, King and Caparon 2005). Alkyl hydroperoxide reductase (AhpC) catalyzes the pyridine nucleotide-dependent reduction of organic hydroperoxides and H2O2 (Poole and Ellis 1996). AhpC is present in GAS and closely related streptococci, including S. mutans and S. agalactiae (group B Streptococcus); however, AhpC is absent in S. pneumoniae (pneumococcus) and Gram-negative bacteria such as E. coli (Yesilkaya et al., 2013). GAS AhpC is an NADH-dependent H2O2-degrading peroxidase that is directly up-regulated in response to oxidative stress, but is not directly regulated by transcription factor PerR (Brenot, King and Caparon 2005), a negative regulator of the inducible peroxide resistance response in GAS. Compared to wild-type serotype M14 GAS strain HSC5, an isogenic in-frame ahpC deletion mutant lacking the central 45 amino acids adjacent to the putative active site residue was more susceptible to a 5–10 mM range of paraquat (methyl viologen), a redox-cycling agent that increases intracellular levels of superoxide; however, the mutation had no effect on growth rate kinetics under aerobic conditions, SodA expression levels or bacterial survival following exposure to 1 mM paraquat (Hassan and Fridovich 1979; King, Horenstein and Caparon 2000). GAS ahpC mutants were more susceptible than wild-type to 5–20% cumene hydroperoxide as measured by zone of growth inhibition in disk diffusion assays (King, Horenstein and Caparon 2000). Catalase treatment rescued the ahpC mutant phenotype, indicating that AhpC enhances GAS resistance to H2O2; however, following challenge with millimolar concentrations of H2O2, no significant decrease in H2O2 resistance was observed between the ahpC mutant and the parental strain (King, Horenstein and Caparon 2000). Interestingly, an ahp mutant in a catalase-deficient E. coli mutant accumulated more H2O2 intracellularly indicating a primary role for Ahp in scavenging intracellular H2O2 (Seaver and Imlay 2001). Recent observations indicate that bacteria are exposed to 5–10 μM H2O2 in neutrophil phagosomes (Mishra and Imlay 2012), concentrations where peroxidases including AhpC are more kinetically efficient scavengers of H2O2 than catalase. However, the enzymatic activity of AhpC is limited by NADH availability and AhpC becomes saturated at H2O2 concentrations around 20 μM (Mishra and Imlay 2012; Imlay 2013). These findings indicate that AhpC from serotype M14 GAS strain HSC5 is not critical for survival in in vitro studies using super-physiological concentrations of 4 mM H2O2, where AhpC is saturated (King, Horenstein and Caparon 2000; Brenot, King and Caparon 2005), but is required for full virulence in a mouse model of soft-tissue infection in vivo (Brenot, King and Caparon 2005).

Glutathione peroxidase (GpoA)

Glutathione peroxidase (Gpo) is a selenoprotein oxidoreductase important for maintaining cellular redox homeostasis and for protecting cells from the deleterious effects of ROS (Arthur 2000). Initial findings using an in-frame gopA mutant indicated that GpoA in serotype M14 GAS strain HSC5 is important for resistance against 5–10 mM paraquat (King, Horenstein and Caparon 2000). Even though GpoA was not involved in resistance against direct challenge with H2O2, the gpoA mutant was rescued by addition of catalase, which detoxifies H2O2, indicating that GpoA also contributes to resistance against downstream products of superoxide (King, Horenstein and Caparon 2000). Subsequent studies with an in-frame gpoA mutant in GAS strain HSC5 showed that GpoA contributes to GAS virulence in in vivo models of disease characterized by acute inflammation, a condition marked by high ROS levels (Mittal et al., 2014), including subcutaneous and systemic infection models (Brenot et al., 2004). However, GpoA was not essential for virulence in a zebrafish (Danio rerio) model of streptococcal myositis, a disease characterized by the absence of inflammatory cell infiltrate (Brenot et al., 2004). These findings suggest that GpoA is essential for GAS to adapt to oxidative stress and indicates that high, non-physiological concentrations of ROS tested in earlier in vitro studies may have neglected the important role played by GpoA in vivo (King, Horenstein and Caparon 2000; Brenot et al., 2004).

NADH oxidase A (NoxA)

The NADH oxidase (NoxA or NOXase) expressed by GAS is an important enzyme involved in H2O2 decomposition and the regeneration of NAD+, which plays a pivotal role in several pathways including DNA repair, post-translational protein modifications and apoptosis (Massudi et al., 2012). Single crossover noxA mutants in serotype M6 GAS strain JRS4 and serotype M14 GAS strain HSC5 showed reduced growth under high O2 conditions and after challenge with paraquat (Gibson et al., 2000). In addition, NoxA-deficient mutants accumulated almost three times more H2O2 in culture supernatant compared to parental strains. All noxA mutant phenotypes were rescued by the addition of catalase to the growth medium (Gibson et al., 2000). Nox enzymes are generally described as a peroxide-resistance mechanism employed by catalase-negative bacteria including GAS. Accordingly, heterologous expression of Nox from Enterococcus faecalis in the noxA GAS mutants reduced H2O2 accumulation in culture supernatant (Gibson et al., 2000). A study using purified recombinant Nox revealed that NoxA from GAS is the most potent enzyme among all tested NADH oxidases from multiple bacteria (Gibson et al., 2000; Gao et al., 2012). This finding indicates that GAS has optimized catalase-independent mechanisms to detoxify H2O2 and that NoxA is an important pathway for GAS to tolerate high O2 environments and promote resistance to ROS (Gibson et al., 2000; Gao et al., 2012).

ENZYMATIC REPAIR MECHANISMS

A sub-lethal dose of ROS damages proteins, DNA and has multiple adverse effects on the bacterium. Therefore, an immediate repair of the damage is essential for the survival of the bacterium. GAS is equipped with efficient repair mechanisms (Table 1). However, this rather indirect contribution to resistance to oxidative stress is proportionally difficult to determine. In the following section, we focus on several key proteins contributing to the repair of ROS-induced cell damage (Fig. 2).

High-temperature requirement A (HtrA)

High-temperature requirement A (HtrA, also designated DegP) is a dual-functional serine protease and chaperone protein that either refolds or degrades damaged proteins destined for secretion into the extracellular environment (Spiess, Beil and Ehrmann 1999). Homologs of this protein are present in many Gram-negative bacteria including E. coli (Bringer et al., 2005) and Gram-positive bacteria such as S. aureus (Rigoulay et al., 2005). HtrA in serotype M14 GAS strain HSC5 is involved in secretion of virulence factors via the ExPortal, a discrete cytoplasmic membrane microdomain involved in the biogenesis of secreted GAS proteins (Rosch and Caparon 2005). HtrA indirectly affects the maturation kinetics of the secreted cysteine protease streptococcal pyrogenic exotoxin B (SpeB), with the absence of a functional HtrA causing a delay in the biogenesis of active SpeB protease (Cole et al., 2007). Studies with an insertional htrA mutant in serotype M6 GAS strain S43 (ATCC 12348) showed a growth defect at 37 and 44°C, an inhibition zone around disks with 200 mM paraquat, and HtrA was necessary for full virulence in a mouse model of infection (Jones et al., 2001). A more recent study using an insertional htrA mutant in GAS confirmed the earlier report showing a growth defect at 37°C (Jones et al., 2001; Lyon and Caparon 2004); however, an in-frame htrA mutant in serotype M14 GAS strain HSC5 had no growth defect at 37°C (Lyon and Caparon 2004). Therefore, it remains unclear if the defect in oxidative stress resistance observed with htrA mutant in GAS strain S43 might be due to secondary effects rather than the direct activity of HtrA.

DNA polymerase I (PolA1)

Recently, a DNA polymerase I (PolA1) was identified in GAS, expressed from the same five-gene operon as the peroxide stress response regulator PerR (Toukoki and Gryllos 2013). An in-frame polA1 mutant in a serotype M3 GAS strain 003Sm was hypersensitive to challenge with 10 mM H2O2 compared to the wild-type and complemented strains. In addition, the mutant was rescued after challenge with H2O2 in the presence of an iron chelator deferoxamine mesylate (desferal, DFM) or the hydroxyl radical scavenger thiourea suggesting that the hypersensitivity of the mutant occurred via the Fenton reaction (Toukoki and Gryllos 2013). Adaptation with sub-lethal H2O2 prior to H2O2 lethal challenge decreased the killing of the double perR polA1 mutant 9-fold indicating that PolA1 is involved in a PerR-dependent oxidative stress defense (Toukoki and Gryllos 2013). Furthermore, the polA1 mutant exhibited a reduction in the repair of DNA damage initiated by UV light or ciprofloxacin (Toukoki and Gryllos 2013), a fluoroquinolone antibiotic that induces double-strand DNA breaks via entrapment of topoisomerases during DNA cleavage (Chen et al., 1996). PolA1 also contains a 5′–3′ exonuclease domain and increased mutation rates associated with PolA1 function to promote genetic diversity (Toukoki and Gryllos 2013).

ROLE OF CATIONS IN GAS RESISTANCE TO OXIDATIVE STRESS

The acquisition of metal ions such as iron (Fe), manganese (Mn), cobalt (Co) and zinc (Zn) is important for the survival of bacterial pathogens inside the human host. Metal ions enhance oxidative stress resistance by directly detoxifying ROS, serving as cofactors for enzymes such as SodA, and acting as signaling molecules for the transcriptional regulation of genes involved in ROS defense (Yesilkaya et al., 2013). However, high intracellular concentrations of metal ions may be bactericidal or induce oxidative stress (Finney and O'Halloran 2003); therefore, GAS has evolved effective systems to tightly regulate metal ion homeostasis (Nelson 1999). A recent study in serotype M1T1 GAS strain 5448, a representative of the globally disseminated serotype M1T1 clone (Cole et al., 2011), demonstrated that mutants in a putative Zn2+ efflux/activator system, czcD (Spy_0653) and gzcA (Spy_0654) resulted in increased susceptibility to Zn2+ and clearance by innate immune cells in vitro and in a mouse model of soft-tissue infection (Ong et al., 2014). These findings indicate that Zn2+ contributes to clearance of bacterial pathogens by acting as an antimicrobial factor, and that Zn2+ efflux systems are important for full GAS virulence.

Neutrophils are the first line of defense against invading pathogens. Calprotectin from neutrophils binds and reduces the availability of Mn2+ and Zn2+ at the site of infection, which decreases the activity of the Mn2+-dependent Sod in S. aureus (Kehl-Fie et al., 2011). Inhibition of Sod results in a higher susceptibility of S. aureus by promoting clearance of innate immune cells in vitro and in vivo (Kehl-Fie et al., 2011). MtsABC from GAS functions as a Mn2+ transporter and GAS deficient in MtsABC are more susceptible to superoxide probably due to the decreased activity of SodA (Janulczyk, Ricci and Bjorck 2003), as described in more detail below. In addition, GAS requires low levels of Fe3+ for growth and survival in the human host; however, GAS preferably utilizes Mn2+ as cofactor for enzymes possibly to minimize iron-induced radical formation via the Fenton reaction as described for S. pneumoniae (Ong et al., 2013). GAS has multiple metal transporters and receptors. Herein, we focus on the contribution of metal transport systems to ROS resistance (Fig. 2).

PerR-regulated metal transporter A (PmtA)

In a genome-wide transcriptome analysis between serotype M14 GAS strain HSC5 and an in-frame perR mutant in the absence of a stress stimulus, six genes were identified with at least 3-fold differential expression (Brenot, Weston and Caparon 2007). Among those genes, five were up-regulated and one was down-regulated. One of the up-regulated genes in the perR mutant is the PerR-regulated metal transporter A (PmtA), which has a PerR-binding site and is a putative iron efflux protein in GAS. Overexpression of PmtA in the perR mutant is responsible for a higher resistance of up to 1.75 mM zinc, concentrations to which the wild-type and pmtA mutant were susceptible. In addition, an in-frame pmtA mutant was more sensitive to challenge with 4 mM H2O2 compared to the wild-type. However, in an in vivo mouse model of soft-tissue infection, pmtA was not found to be up-regulated compared to mid-log growth phase (Brenot, Weston and Caparon 2007). Therefore, the exact role of PmtA in vivo remains unclear. A similar global transcriptional analysis in serotype M3 GAS strain 003Sm confirmed that pmtA is highly regulated by PerR. Interestingly, PerR-regulated genes were essential for GAS pharyngeal colonization and ROS-dependent phagocyte resistance indicating an important role for PmtA in physiology and potentially virulence (Gryllos et al., 2008).

Dps-like peroxide resistance protein (Dpr)

In the presence of iron, H2O2 is readily converted to the highly reactive OH• through the Fenton reaction. The Dps-like peroxide resistance protein (Dpr, also designated MrgA) plays a pivotal role in resistance to oxidant stress by functioning as a chelator of intracellular iron (Fe2+) to prevent the production of bactericidal hydroxyl radicals via the Fenton reaction (Andrews, Robinson and Rodriguez-Quinones 2003; Tsou et al., 2008; Haikarainen et al., 2010; Ge and Sun 2014). Dpr has also been reported to protect GAS from pH-induced stress (Tsou et al., 2008), and is transcriptionally repressed by PerR (Brenot, King and Caparon 2005; Tsou et al., 2010), as discussed below. A study using an in-frame allelic exchange dpr mutant in serotype M1 GAS strain A-20 found that the mutant was hypersensitive to killing by 5 mM H2O2, compared to wild-type and complemented strains (Tsou et al., 2008). Addition of the iron chelator DFM leads to a dose-dependent increase in survival of the mutant strain following in vitro challenge with 5 mM H2O2 (Tsou et al., 2008). Similarly, an in-frame dpr mutant in serotype M14 GAS strain HSC5 did not exhibit a defect in growth under aerobic conditions, nor the ability to degrade peroxide, and was hypersensitive to high concentrations of H2O2, compared to wild-type (Brenot, King and Caparon 2005). These data indicate that Dpr functions as an iron chelator by reducing free iron and thereby increasing the fitness of GAS inside the human host. In Bacillus subtilis and S. aureus (Chen and Helmann 1995), MrgA plays a central role in protection from a lethal challenge of peroxide. In S. mutans, Dpr is important for growth under aerobic conditions (Yamamoto et al., 2000). The transcriptional regulator PerR directly regulates the expression of Dpr in GAS (Brenot, King and Caparon 2005).

Metal transporter of Streptococcus ABC (MtsABC/SiaABC)

In order to establish an infection and survive within the host, many Gram-positive bacterial pathogens utilize ATP-binding cassette (ABC) transporters to acquire essential nutrients and metal ions such as copper, manganese, iron, zinc and cobalt (Claverys 2001; Higgins 2001). Metal homeostasis plays an important role in GAS resistance to oxidative stress and virulence (Ge and Sun 2014), and three metal ABC transporters have been described so far: 1) MtsABC is involved in the uptake and transport of a variety of cations in GAS (Fe3+, Zn2+ and Mn2+) (Janulczyk, Pallon and Bjorck 1999; Janulczyk, Ricci and Bjorck 2003); 2) SiaABC/HtsABC transports heme (Payne 1993); and 3) FtsABC is the principal transporter of Fe3+ and heme (Hanks et al., 2005; Ge and Sun 2014). Compared to the wild-type strain, a perR mutant exhibited a reduction in mtsA transcript levels suggesting that PerR up-regulates mtsABC transcription (Ricci, Janulczyk and Bjorck 2002). MtsABC-deficient GAS exhibit reduced growth rates in metal-depleted medium and under aerobic conditions (Janulczyk, Ricci and Bjorck 2003). The mtsABC mutant in serotype M1 GAS strain AP1 was hypersensitive to killing by 5 mM H2O2 and paraquat-induced superoxide radicals following growth in the presence of 2 or 10 mM paraquat, in comparison to wild-type (Janulczyk, Ricci and Bjorck 2003). In GAS, Mn-dependent SodA plays an important role in bacterial resistance to oxidative stress (Gibson and Caparon 1996; Fridovich 1997; Ferretti et al., 2001). The reduced SodA enzymatic activity of the mtsABC mutant, most likely due to low intracellular levels of manganese resulting from defective manganese transport, may account for this defect in ROS resistance. Supplementation of the culture medium with 30 μM MnCl2 restored SodA enzymatic activity and growth rate to wild-type levels in the presence of paraquat. The mtsABC mutant strain was ∼30-fold less virulent compared to wild-type in an in vivo mouse air sac model of subcutaneous infection. These data demonstrate that metal cation acquisition by MtsABC plays a key role in GAS growth, oxidative stress resistance and virulence (Janulczyk, Ricci and Bjorck 2003). Additionally, MtsABC shares homology with the pneumococcal surface antigen A, the lipoprotein part of an ABC Mn2+ transporter, which also functions as an adhesin and is necessary for full virulence in a mouse model of soft-tissue infection (Berry and Paton 1996).

Streptococcal hemoprotein receptor (Shr)

Iron availability is essential for bacterial growth, survival and the establishment of infection within the human host (Payne 1993). Streptococcal hemoprotein receptor (Shr) is the first protein of the streptococcal iron acquisition (Sia) operon and is necessary for maintenance of iron homeostasis (Bates et al., 2003). Shr is a surface-associated and secreted receptor for heme, which is the main source of iron in human blood (Bates et al., 2003; Fisher et al., 2008). Insertional inactivation of the shr gene in serotype M1 GAS strain SF370 enhanced bacterial survival after challenge with 5 mM H2O2, compared to wild-type. However, the addition of hemoglobin increased the survival of wild-type to the same level of the shr mutant, suggesting that Shr is involved in hemoglobin-dependent resistance to H2O2 (Bates et al., 2003). A recent study demonstrated that Shr is important for survival of serotype M1T1 GAS strain 5448 in human whole blood and full virulence in two in vivo mouse models of infection, underscoring the important role for metal cations in GAS pathogenesis (Dahesh, Nizet and Cole 2012). These studies reveal that during bloodstream infections, hemoglobin sequestration by Shr is an important defense mechanism of GAS to survive inside the human host, presumably by capturing free Fe2+ and thereby preventing the production of highly bactericidal hydroxyl radicals.

GAS REGULATION OF THE OXIDATIVE STRESS RESPONSE

Stress response plays an important role in the regulation of virulence and gene expression in bacterial pathogens; however, the σB general stress response pathway involved in the regulation of stress-induced genes in many Gram-positive species (Volker et al., 1994) is absent in GAS. A coordinated response to oxidative stress is necessary for GAS to establish an infection and cause disease. Several two-component systems or stand-alone transcriptional regulators respond to extracellular stimuli and have been linked to the GAS oxidative stress response, including PerR, Rgg/RopB, Ihk-Irr, MtsR and CiaRH.

PerR regulon

Regulation of the inducible peroxide resistance response in GAS is primarily coordinated by the peroxide-sensing PerR transcriptional regulator, a 155 amino acid zinc-containing metalloprotein, which is a member of the ferric uptake regulator (Fur) family of metal-binding transcriptional regulators (Herbig and Helmann 2001; Mongkolsuk and Helmann 2002; Brenot, King and Caparon 2005; Moore and Helmann 2005). PerR is a negative transcriptional regulator, or repressor, of the inducible peroxide resistance response in GAS (King, Horenstein and Caparon 2000; Ricci, Janulczyk and Bjorck 2002), and contributes to GAS iron homeostasis, oxidative stress response and virulence (Ricci, Janulczyk and Bjorck 2002; Brenot, King and Caparon 2005; Gryllos et al., 2008) (Table 2). PerR generally acts as a repressor by directly binding the promoter of the target gene (Mongkolsuk and Helmann 2002; Hayashi et al., 2005). Peroxide sensing by PerR requires regulatory metal ions, and under oxidative stress conditions PerR conformational changes induced by the oxidation of metal ions reduce the DNA-binding affinity of PerR, de-repressing target gene expression (Dubbs and Mongkolsuk 2012) (Fig. 3). The PerR of B. subtilis has been well characterized and shown to repress the expression of target genes by binding to conserved promoter sequences known as Per boxes (Chen, Keramati and Helmann 1995). However, with the exception of pmtA and ahpCF, the Per box sequence is not fully conserved in promoters regulated by PerR in GAS (Brenot, King and Caparon 2005; Brenot, Weston and Caparon 2007). In Gram-positive species such as B. subtilis and S. aureus, PerR coordinately controls the oxidative stress response genes and iron homeostasis (Chen, Keramati and Helmann 1995; Horsburgh et al., 2001; Helmann et al., 2003) in order to prevent the Fenton reaction, whereby intracellular iron reacts with H2O2 to form highly toxic and oxidizing hydroxyl radicals (OH•).

Table 2.

PerR-regulated genes identified by microarray analyses and confirmed by quantitative real-time PCR (qRT-PCR) for different GAS serotypes.

M type	ORF no.a	Growth phase	Gene	Proteinb	Relative expressionc		Referenced
					Microarray	qRT-PCR
Oxidative stress – virulence (putative)
M3	0466	Mid-exponential	adcA	Putative adhesin (zinc-binding)	−4.6	−3.2	Gryllos et al. (2008)
M3	0815	Mid-exponential	hylIII	Putative hemolysin III	+3.0	−1.2	Gryllos et al. (2008)
M3	1093	Mid-exponential	pmtA	Putative metal transport ATPase	−11.3	−15.8	Gryllos et al. (2008)
M14	05800	Mid-exponential	pmtA	Putative metal transport ATPase	n/a	−30.0	Brenot, Weston and Caparon (2007)
M3	1770	Late exponential	ahpC	Putative alkyl hydroperoxidase	−1.7	−1.9	Gryllos et al. (2008)
M14	08790	Mid-exponential	ahpC	Putative alkyl hydroperoxidase	n/a	−1.3	Brenot, King and Caparon (2005)
M3	1095	Late exponential	mf4	Putative mitogenic factor/DNase	−2.2	−2.1	Gryllos et al. (2008)
M1	1436	Mid-exponential	mf3	Secreted DNase virulence factor	n/a	+4.3	Wen et al. (2011)
M3	0298	Late exponential	prtS	Interleukin 8 protease	−2.1	−2.0	Grifantini et al. (2011)
M3	0482	Late exponential	sagC	SLS-associated ORF	−2.1	−1.6	Grifantini et al. (2011)
M14	06285	Mid-exponential	mrgA	Peroxide resistance protein	n/a	−2.8	Brenot, King and Caparon (2005)
M14	08560	Mid-exponential	lsp	Laminin-binding protein	n/a	−100	Brenot, Weston and Caparon (2007)
M1 T1	1415	Mid-exponential	sda1	DNase and virulence factor	n/a	+2.5	Wang et al. (2013)
Sugar metabolism/transport
M3	1489	Late exponential	lacR.1	Putative lactose PTS repressor	+1.9	+2.5	Gryllos et al. (2008)
M3	1484	Mid-exponential	lacB.1	Galactose 6-phosphate isomerase	−2.3	+1.1	Gryllos et al. (2008)
M3	1658	Late exponential	lacB.2	Galactose 6-phosphate isomerase	+5.0	+6.6	Gryllos et al. (2008)
M3	1658	Late exponential	lacB.2	Galactose-6-phosphate isomerase	−4.9	−2.0	Grifantini et al. (2011)
M3	1654	Late exponential	lacE	Putative PTS enzyme IIBC	+4.0	+10.7	Gryllos et al. (2008)
M3	1659	Late exponential	lacA2	Galactose-6-phosphate isomerase	−2.4	−2.5	Grifantini et al. (2011)
M3	1660	Late exponential	lacR.2	Putative lactose PTS repressor	+1.9	+2.2	Gryllos et al. (2008)
M3	1487	Late exponential	pts	Putative PTS enzyme IIB	+2.9	+5.9	Gryllos et al. (2008)
Metal – ABC transport
M3	0069	Mid-exponential	adcR	Putative transcriptional repressor	−1.9	−1.3	Gryllos et al. (2008)
M3	0069	Mid-exponential	adcR	Putative transcriptional repressor	+1.6	+2.3	Grifantini et al. (2011)
M3	0071	Mid-exponential	adcB	Zinc/manganese ABC transporter	+2.0	+1.7	Grifantini et al. (2011)
M3	0319	Mid-exponential	mtsB	Iron ABC transporter	−1.9	−1.0	Grifantini et al. (2011)
M3	1557	Late exponential	siaD	Putative ABC transporter	−1.9	−1.7	Grifantini et al. (2011)
M3	1560	Late exponential	shp	Heme/ferrichrome-binding protein	−2.0	−1.8	Grifantini et al. (2011)
M1	0453	Mid-exponential	mtsA	Iron ABC transporter	n/a	−2.0	Hanks et al. (2006)
General biosynthesis/metabolism
M3	0027	Mid-exponential	purE	Phosphoribosylaminoimidazole carboxylase catalytic subunit	+2.2	+1.2	Gryllos et al. (2008)
M3	1615	Mid-exponential	rpsN.2	30S subunit ribosomal protein S14	−3.3	−2.5	Gryllos et al. (2008)
M14	07960	Mid-exponential	rpsN.2	30S subunit ribosomal protein S14	n/a	−4.0	Brenot, Weston and Caparon (2007)
M3	0302	Late exponential	nrdI.2	Putative ribonucleotide reductase	−2.7	−1.5	Gryllos et al. (2008)
M3	0013	Late exponential	n/a	Putative amino acid permease	−2.5	−1.5	Grifantini et al. (2011)
M3	0217	Late exponential	oppC	Oligopeptide permease	−2.0	−1.9	Grifantini et al. (2011)
M3	1363	Late exponential	cysM	Putative O-acetylserine lyase	+2.1	1.0	Grifantini et al. (2011)
M3	1794	Late exponential	nrdD	Ribonucleoside triphosphate reductase	−2.9	−2.5	Grifantini et al. (2011)
Hypothetical
M3	1208	Mid-exponential	n/a	Conserved hypothetical protein	+2.0	+2.0	Gryllos et al. (2008)
M3	1724	Late exponential	phtD	Hypothetical protein	−2.3	−5.6	Gryllos et al. (2008)
M14	08555	Mid-exponential	phtD	Hypothetical protein	n/a	−100	Brenot, Weston and Caparon (2007)
M14	05535	Mid-exponential	phtY	Hypothetical protein	n/a	−30	Brenot, Weston and Caparon (2007)
Miscellaneous
M3	0840	Mid-exponential	n/a	Putative transcriptional repressor	+3.2	+4.6	Grifantini et al. (2011)
M14	08775	Mid-exponential	csp	Putative cold shock protein	n/a	+2.5	Brenot, King and Caparon (2005)

aOpen reading frame (ORF) number of published GAS genome sequence: M1 strain SF370 (Ferretti et al., 2001), M1T1 strain MGAS5005 (Sumby et al., 2005), M3 strain MGAS315 (Beres et al., 2002) and M14 strain HSC5 (Port, Paluscio and Caparon 2013).

bNCBI annotation.

cFold-change of expression in wild-type GAS compared to expression in the isogenic perR mutant.

dGryllos et al. (2008): Transcriptome comparisons performed between wild-type M3 GAS strain 003Sm and isogenic perR mutant strain 003SmperRΔ grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) phase.

Grifantini et al. (2011): Wild-type M3 GAS strain 003Sm and perR mutant 003SmperRΔ were grown to mid-exponential phase (OD600nm = 0.25) or late-exponential phase (OD600nm = 0.6) at which point they were challenged with H2O2 (final concentration 0.5 mM) for 15 min at 37°C or with water as a control.

Brenot, King and Caparon (2005): Total RNA extracted from mid-exponential phase (OD600nm = 0.3) cultures of wild-type serotype M14 GAS strain HSC5 and the isogenic perR mutant.

Brenot, Weston and Caparon (2007): RNA from HSC5 and the isogenic PerR-deficient mutant (HΔPer) was isolated from mid-exponential phase cultures (OD600nm = 0.3).

Wen et al. (2011): Transcriptome comparisons were performed between wild-type M1 strain AP-20 and isogenic perR mutant strain (SW-612) cultured to mid-log phase (OD600nm ∼ 0.5).

Wang et al. (2013): Wild-type serotype M1 GAS strain A-20 and isogenic perR mutant (SW-612) were grown for 3 h and treated with 0.5 mM of H2O2 for another 2 h prior to RNA extraction and real-time PCR analysis.

Hanks et al. (2006): Serotype M1 GAS strain MGAS5005 and the isogenic perR mutant were harvested at an OD600nm of 0.2, 0.4 or 0.7 and immediately processed to isolate total RNA.

n/a; not available.

Figure 3.

Transcriptional regulator PerR regulates the inducible peroxide resistance response. (A) Under normal conditions, PerR has a bound zinc ion (Zn2+) and generally represses transcription of PerR-regulated genes by directly binding conserved sequences, known as Per boxes, in the promoter of each target gene. (B) Under conditions of peroxide stress (H2O2), a ferrous ion (Fe2+) is bound, resulting in the oxidation of histidine residues and conformational changes within PerR. (C) Conformational changes reduce the DNA-binding affinity of PerR, resulting in the dissociation of PerR from the PerR boxes, and transcription of the target gene. (D) GAS PerR regulates genes involved in virulence, sugar metabolism/transport, metal ion efflux and housekeeping metabolic pathways.

Structure of PerR

The unique 11 amino acid residue N-terminal HXH metal-binding motif of PerR is highly conserved among GAS isolates and plays a role in oxidative stress sensing, metal ion binding and GAS virulence (Makthal et al., 2013). Fluorescence polarization assays indicate that metal ion binding enhances the DNA binding affinity of PerR, but has no influence on the sequence-specific DNA binding. Gel mobility shift assays demonstrate that PerR directly senses peroxide stress conditions through iron-dependent metal-catalyzed oxidation, relieving repression of target genes by dissociating from the binding site in the promoter region (Makthal et al., 2013). The PerR crystal is a homodimer containing two metal-binding sites within the dimerization domain (site 1) and interdomain region (site 2) (Makthal et al., 2013). The zinc-binding at site 1 contributes to structural integrity and PerR dimerization, while the metal-binding at site 2 is essential for peroxide sensing, gene regulation and full virulence in a mouse model of systemic GAS infection (Makthal et al., 2013). Under normal conditions in B. subtilis, PerR has a bound zinc ion and represses transcription of PerR-regulated genes by directly binding to the PerR boxes in the promoter region. In the presence of oxidative conditions, a ferrous ion (Fe2+) is bound, resulting in the oxidation of three histidines, the release of PerR from the PerR boxes and de-repression of the PerR regulon (Herbig and Helmann 2001; Lee and Helmann 2006) (Fig. 3).

Transcriptomic and proteomic studies of PerR-deficient GAS

The PerR regulon varies considerably among GAS serotypes. For example, the PerR regulon in serotype M5 GAS consists of 6 genes (Brenot, King and Caparon 2005; Brenot, Weston and Caparon 2007), whereas the M3 GAS PerR regulon contains 42 genes (Gryllos et al., 2008). Importantly, not all studies identify the same PerR-regulated genes, perhaps reflecting differences in growth phase (mid-exponential vs. late-exponential) or serotype-dependent variation among GAS isolates (Table 2).

Serotype M1 GAS

Precise allelic replacement mutagenesis of perR in serotype M1 GAS strain AP1 was performed by replacing the DNA- and metal-binding domains of perR (residues 202 to 361) with a kanamycin resistance gene, and complemented with a plasmid containing a functional perR gene and promoter region (Ricci, Janulczyk and Bjorck 2002). Northern blot analysis of the AP1 perR mutant cultured to exponential growth phase revealed a 48% reduction in iron (55Fe) incorporation from the culture medium, and a 2.4-fold reduction in the transcription of metal-binding ABC transporter mtsA (Janulczyk, Pallon and Bjorck 1999), compared to wild-type (Ricci, Janulczyk and Bjorck 2002), suggesting that PerR positively activates mtsABC transcription (Ricci, Janulczyk and Bjorck 2002). The in vitro growth rate of the AP1 perR mutant was similar to wild-type following growth in Todd-Hewitt medium supplemented with 0.2% yeast extract (THY), metal-depleted THY and iron-repleted THY (100 μM ferric citrate) under aerobic conditions. The perR-deficient mutant was hyperresistant to H2O2 stress as assessed by growth of mid-log phase cultures exposed to 5 mM peroxide stress for 30 min. The perR mutant was more sensitive to the superoxide anion, as indicated by poor growth in the presence of 10 mM paraquat. Compared to wild-type, the PerR-deficient strain had an ∼3-fold transcriptional reduction of sodA suggesting that PerR plays a role in the regulation of SodA expression and resistance to superoxide stress in GAS. High intracellular concentrations of H2O2 may de-repress ROS-responsive regulation, resulting in the partial repression of SodA to minimize H2O2 production, and the down-regulation of mtsABC to reduce intracellular Fe2+ and the production of bactericidal hydroxyl radicals by the Fenton reaction. Compared to the parental A-20 strain, the perR mutant was attenuated for virulence in a BALB/c mouse skin air sac infection model of GAS infection, consistent with previous reports (Ricci, Janulczyk and Bjorck 2002; Brenot, King and Caparon 2005; Gryllos et al., 2008). It is unclear whether the attenuation was a consequence of perR inactivation, the down-regulation of sodA expression or the reduced ability of the perR mutant to grow under iron-restricted conditions in vivo.

Secreted proteins from wild-type serotype M1 GAS strain A-20 and an isogenic perR mutant (SW-612) cultured to stationary phase in conditional medium with a protease inhibitor cocktail were compared using two-dimensional (2D) gel electrophoresis to ascertain how PerR regulates the expression of the GAS secretome (Wen et al., 2011). Twenty-five proteins were down-regulated and 13 proteins were up-regulated in the perR-deficient mutant, compared to wild-type (Wen et al., 2011). Approximately 50% of the PerR-regulated proteins identified were predicted to play a role in sugar metabolism and stress response. Activation of sugar metabolic pathways may be necessary for GAS to mobilize the additional energy needed to survive and proliferate under oxidative stress conditions (Wen et al., 2011).

Serotype M3 GAS

Mutation of perR in M3 GAS strain 003Sm enhanced sensitivity to phagocytic clearance by whole human blood and mouse macrophages (Gryllos et al., 2008). Inhibition of phagocyte oxidative burst with diphenyleneiodonium chloride rescued the perR mutant phenotype, suggesting that the PerR regulon enhances GAS resistance to phagocyte oxidative burst. Competitive co-infection experiments with wild-type and perR-deficient bacteria demonstrated that the perR mutant was more rapidly cleared and attenuated for virulence in a baboon model of GAS pharyngitis. Comparative analysis of global gene expression in wild-type M3 GAS and the isogenic perR mutant cultured to late-exponential phase identified 42 genes regulated by the PerR regulon (Gryllos et al., 2008). Approximately 50% of the PerR-dependent genes were predicted to encode proteins involved in oxidative stress resistance, virulence, sugar transport and metabolism, which may reflect the increased energy required for GAS to survive the harsh oxidative conditions generated by the host innate immune response (Gryllos et al., 2008). These data indicate that PerR regulates the expression of a diverse set of genes, enhances GAS resistance to phagocytic clearance and contributes to pharyngeal colonization in a non-human primate model of GAS pharyngeal colonization (Gryllos et al., 2008).

Grifantini and coworkers (Grifantini et al., 2011) conducted a transcriptomic analysis of a perR mutant in serotype M3 GAS strain 003Sm cultured in the presence of H2O2. Analysis of wild-type and perR mutant transcriptomes revealed that 76 of 237 peroxide-regulated genes were PerR dependent. The PerR-regulated genes, which encode purine and deoxyribonucleotide biosynthesis enzymes, peptide transport and heme uptake, were mostly down-regulated. 53% of the 161 PerR-independent genes were repressed, and encoded for proteins with similar functions to PerR-regulated genes (Grifantini et al., 2011). The 75 up-regulated genes encoded for proteins involved in the detoxification of ROS, repair of damaged DNA, cofactor metabolism and pilus biosynthesis. The strong activation of metabolic enzymes and DNA damage repair mechanisms may play a key role in GAS survival in oxidative environments in vivo, similar to S. aureus (Chang et al., 2006; Grifantini et al., 2011; Le Breton et al., 2013; Toukoki and Gryllos 2013). PerR-dependent regulation was restored by complementation of the perR mutant with the wild-type PerR protein, but not with a modified PerR containing a mutation in one of the two metal-binding sites (Grifantini et al., 2011). Metal content analysis revealed that PerR binds zinc and iron, and that iron oxidation plays a key role in the PerR response (Grifantini et al., 2011). The binding of PerR to the promoter following treatment with EDTA suggests that iron is not required for DNA binding, but is required for optimal PerR-regulated peroxide responses. Reduced iron/heme uptake and increased Mn2+ import may augment the substitution of Fe2+ with the Fenton-insensitive Mn2+ and permit maximal enzymatic activity under oxidative conditions, as previously described for E. coli (Anjem, Varghese and Imlay 2009).

Serotype M5 GAS

Comparative transcriptomic analysis of wild-type M5 GAS and an isogenic perR mutant cultured to mid-log growth phase in the absence of oxidative stress revealed one highly down-regulated gene (czcD), a newly identified GAS virulence factor (Ong et al., 2014) and five highly up-regulated genes in the perR mutant (Brenot, Weston and Caparon 2007). Of the five up-regulated genes, only pmtA, encoding for PmtA involved in metal homeostasis and transport, contained a PerR-binding site in the promoter region and was directly repressed by PerR (Brenot, Weston and Caparon 2007). The ABC-type metal transporter and transcriptional regulator, AdcR, repressed the expression of the remaining genes (phtY, phtD, lsp and rpsN2). Mutagenesis of all genes in the perR mutant background revealed that only pmtA contributes to H2O2 stress resistance in vitro (Brenot, Weston and Caparon 2007). The indirect effect on the remaining genes was attributed to metal ion starvation mediated by AdcR (Brenot, Weston and Caparon 2007). The overexpression of pmtA also up-regulated the AdcR-regulated genes, suggesting a link between metal ion homeostasis and the PerR and AdcR oxidative stress responses. Up-regulation of PmtA enhanced the resistance of M5 GAS perR mutants to H2O2 in vitro (Brenot, Weston and Caparon 2007). However, PmtA overexpression increased metal efflux and may potentiate metal starvation, which could (at least in part) explain the reduced virulence of perR mutants in vivo.

Serotype M14 GAS

The growth kinetics of a perR mutant in serotype M14 GAS strain HSC5 containing an in-frame deletion in the N-terminal DNA-binding region of PerR was similar to wild-type under aerobic conditions (King, Horenstein and Caparon 2000). However, compared to wild-type bacteria, perR mutant survival was dramatically enhanced in lethal concentrations of H2O2 (King, Horenstein and Caparon 2000). De-repression of the transcription of ahpC, gpoA and mrgA was not observed for the HSC5 perR mutant (King, Horenstein and Caparon 2000), in contrast to a perR mutant reported for B. subtilis (Chen and Helmann 1995; Bsat et al., 1998). These data suggest that in M14 GAS, the transcription of ahpC, gpoA and mrgA is not induced under conditions of peroxide stress, and is not repressed by PerR (King, Horenstein and Caparon 2000). Primer extension analysis and DNase 1 protection assays indicate that the transcriptional regulator PerR binds to a single promoter upstream of ahpC (Brenot, King and Caparon 2005). The regulation of ahpC is growth phase dependent and independent of PerR (Brenot, King and Caparon 2005). MrgA is regulated by PerR and plays a key role in oxidative stress resistance in S. mutans (Yamamoto et al., 2000), B. subtilis and S. aureus (Chen and Helmann 1995). In contrast to a previous report (King, Horenstein and Caparon 2000), quantitative real-time PCR analysis of mid-log phase wild-type and perR mutant cultures for serotype M14 GAS strain HSC5 revealed higher mrgA transcripts for the perR mutant, indicating that PerR directly represses mrgA transcription through the binding of PerR to the mrgA promoter region (Brenot, King and Caparon 2005). PerR is required for full virulence in C57Bl/6J mouse models of subcutaneous and systemic intraperitoneal mouse infections, and a zebrafish model of intramuscular infection (Brenot, King and Caparon 2005).

PerR regulation of GAS DNases

GAS DNases Sda1, Spd, MF3 and SpnA are important virulence factors (Iwasaki, Igarashi and Yutsudo 1997; Aziz et al., 2004; Buchanan et al., 2006; Chang et al., 2011). Mitogen factor 3 (MF3) and streptodornase 1 (Sda1) are bacteriophage-encoded, whereas Spd and SpnA are chromosomally encoded (Hasegawa et al., 2002; Sumby et al., 2005). PerR directly binds to the promoter region and positively regulates the expression of MF3, a secreted DNase and virulence factor in serotype M1 GAS (Hasegawa et al., 2002; Wen et al., 2011). The expression of sda1, encoding for the bacteriophage-encoding DNase Sda1, is up-regulated under oxidative stress conditions in wild-type M1 GAS bacteria, but not in a perR-deficient mutant. Gel mobility shift assays revealed that PerR directly binds to the sda1 promoter region. Mutation of a PerR metal binding site (histidine-99) reduced sda1 expression in GAS pretreated with H2O2 (Wang et al., 2013). The PerR-dependent expression of sda1 may facilitate GAS evasion of the host innate immune response. Sda1 expression enhances GAS degradation of NETs, promoting neutrophil survival and systemic dissemination of GAS from the infection site to normally sterile sites (Walker et al., 2007; Cole et al., 2011). Sda1 also prevents Toll-like receptor 9 recognition of degraded bacterial DNA to promote GAS immune escape (Uchiyama et al., 2012). In M3 GAS, the expression of the phage-encoded DNase MF4 (spyM3_1095) is PerR dependent and induced under conditions of oxidative stress and DNA damage (Banks, Lei and Musser 2003).

Transcriptional regulator Rgg/RopB

Rgg, also known as RopB, is a DNA-binding global transcriptional regulatory protein that plays a key role in coordinating the expression of cell wall-associated and secreted virulence factors (Chaussee, Ajdic and Ferretti 1999, Chaussee et al., 2001, 2002), secondary amino acid metabolic enzymes (e.g. arginine and serine catabolism) (Chaussee et al., 2003), and proteins involved in thermal and oxidative stress resistance in GAS. The Rgg of GAS is a 280 amino acid (∼33.2 kDa) polypeptide with an N-terminal helix–turn–helix motif that binds to the promoter regions of Rgg-regulated genes (Neely et al., 2003; Anbalagan et al., 2012). In serotype M49 GAS strain NZ131, Rgg regulates the expression of several secreted GAS virulence factors including cysteine protease SpeB, C5a peptidase, M protein, cytolysin streptolysin O and streptokinase (Lyon, Gibson and Caparon 1998; Chaussee, Ajdic and Ferretti 1999; Chaussee et al., 2001, 2002). Inactivation of rgg affects the expression of several transcriptional regulatory genes, including fasBCA, mga, sagA and covRS/csrRS (Chaussee et al., 2002), indicating that Rgg interacts directly or indirectly with other global transcriptional regulators.

Chaussee, Callegari and Chaussee (2004) used a comparative proteomic approach to identify the Rgg-regulated cytoplasmic proteins from mid-log and stationary phase cultures of wild-type serotype M49 GAS and an isogenic rgg mutant strain. Cytoplasmic proteins were identified by 2D gel electrophoresis and tandem mass spectrometry and revealed a growth phase-dependent Rgg regulation of proteins associated with arginine metabolism (ArcABC), histidine (HutI) and serine (SdhA) in the exponential growth phase (Chaussee, Callegari and Chaussee 2004). Thermal and oxidative stress response proteins, including ClpE and ClpL, were expressed in the rgg mutant, but not wild-type (Chaussee, Callegari and Chaussee 2004). Compared to wild-type, the Rgg-deficient strain was more resistant to heat-shock and puromycin (Chaussee, Callegari and Chaussee 2004), an aminoacyl-tRNA analog that inhibits protein synthesis and induces a heat-shock-like response in Gram-negative and Gram-positive bacteria (VanBogelen and Neidhardt 1990; Frees and Ingmer 1999; Steiner and Malke 2001). The rgg mutant was also hypersensitive to killing by superoxide free radicals induced by 50 mM paraquat exposure (Chaussee, Callegari and Chaussee 2004). The oxidoreductases AhpC (SPy2079) and Nox1 (SPy2080) were more abundant in the rgg-deficient strain, indicating the de-repression of enzymes associated with GAS resistance to oxidative stress (Chaussee, Callegari and Chaussee 2004).

More recently, a serotype M49 GAS strain deficient in Rgg decomposed more H2O2 and was more resistant to 4 mM H2O2-mediated killing, compared to the wild-type parental strain (Pulliainen et al., 2008). A double mutant deficient in rgg and perR was resistant to 4 mM H2O2 and did not exhibit changes in the expression of PerR target gene Dpr/MrgA, compared to the perR mutant, suggesting that Rgg H2O2 regulation may be independent of the PerR regulon (Pulliainen et al., 2008). Transcriptomic analysis revealed that the ahpCF operon expression was up-regulated in rgg mutant GAS (Pulliainen et al., 2008), suggesting that ahpCF is regulated by Rgg. The ahpCF gene products are involved in reducing organic peroxides, decomposing H2O2 and enhancing resistance against oxidative stress (Ellis and Poole 1997; Poole et al., 2000). In addition to ahpC, serine protease and chaperone HtrA, also known as DegP, is up-regulated in rgg mutant GAS (Chaussee, Callegari and Chaussee 2004; Dmitriev et al., 2006). The H2O2-resistant rgg mutant was more virulent in a mouse model of systemic GAS infection (Pulliainen et al., 2008).

Two-component regulator Ihk-Irr

Voyich and coworkers (Voyich et al., 2003) reported the discovery of Ihk-Irr, a two-component global gene regulatory system that enhances GAS resistance to neutrophil killing and facilitates the lysis of host cells at the site of infection. Upon exposure of GAS to human neutrophils, 276 genes (∼16% of the M1 GAS genome) were differentially transcribed (Voyich et al., 2003). Eleven GAS virulence genes were up-regulated including sic (streptococcal inhibitor of complement), speH (streptococcal pyrogenic exotoxin H), ndoS (endoglycosidase S), smeZ (streptococcal mitogenic exotoxin Z) and speB (streptococcal pyrogenic exotoxin B), which are known to contribute to neutrophil resistance or modulation of the human innate immune system (Lukomski et al., 1998; Lei et al., 2001; Hoe et al., 2002). GAS genes encoding proteins involved in DNA repair and resistance to ROS-mediated cell damage were up-regulated, including bsa (glutathione peroxidase), ahpC (alkylhydroperoxidase), dnaK (Hsp70) and nox1 (NADPH oxidase) (Voyich et al., 2003). Phagocytosis of GAS by neutrophils induced the up-regulation of nine genes encoding for proteins that participate in cell wall biogenesis, perhaps in response to the cell wall damage induced by phagocytosis and ROS (Voyich et al., 2003). Metabolic pathway genes were also up-regulated, presumably because an increase in energy metabolism is essential for GAS survival during phagocytosis. Phagocytosis altered the expression of genes encoding for proteins involved in the global transcriptional regulation of GAS. The mga regulon, encoding for a transcriptional regulator of virulence factors (Kihlberg et al., 1995), was up-regulated during phagocytosis. The genes encoding the two-component gene regulatory system, ihk and irr, were up-regulated, suggesting a role for this regulatory system in host innate immunity resistance (Voyich et al., 2003). A serotype M6 GAS strain JRS4 lacking the irr gene was hypersensitive to killing by human neutrophils following phagocytosis, indicating that Ihk-Irr plays a key role in the expression of genes necessary for GAS to survive phagocytosis. The irr gene is highly expressed in humans with GAS pharyngitis, as assessed by quantitative real-time PCR, suggesting that Ihk-Irr is important for GAS survival in humans (Voyich et al., 2003).

Microarray analysis comparing the global gene expression profiles of a wild-type M6 GAS and a corresponding irr mutant demonstrated that Ihk-Irr controls the expression of ∼20% of genes in the GAS genome (Voyich et al., 2004). Several genes involved in oxidative stress resistance were differentially regulated by ihk-irr, including nrdH (glutaredoxin), trx (thioredoxin), trxR (thioredoxin reductase), nox (NADH peroxidase), rnr (ribonucleotide reductase) and bsaA (glutathione peroxidase) (Voyich et al., 2004). Multiple virulence-associated genes, including fbp (putative fibronectin-binding protein-like protein A), mf and mf3 (DNases), and sagA (SLS), and multiple genes involved in cell wall biosynthesis were regulated by the Ihk-Irr regulon (Voyich et al., 2004). The up-regulation of cell wall biosynthesis genes may protect the bacteria from cationic neutrophil antimicrobial peptides such as LL-37 and cathepsin G, which disrupt the bacterial cell membrane (Ganz et al., 1985; Peschel et al., 1999, Poyart et al., 2003). During phagocytosis bacteria are exposed to ROS and antibacterial granule components stored within phagocytic vacuoles. Real-time PCR transcript analysis indicated that ihk and irr expression are induced upon GAS exposure to H2O2 and neutrophil primary granules (Voyich et al., 2004). In contrast to wild-type GAS, Irr-deficient GAS were more rapidly killed after phagocytosis through enhanced sensitivity to solubilized neutrophil primary granules, which are composed of α-defensins, elastase and cathepsin G (Sorensen et al., 1997). The irr-deficient strain was more susceptible than wild-type to killing by H2O2 across a range of different concentrations, and was hypersensitive to killing by the cell envelope active antimicrobial peptides LL-37 and cathepsin G. Inactivation of irr delayed the formation of skin abscesses and resulted in smaller abscesses, indicating that Irr is required for full GAS virulence in a mouse model of subcutaneous infection. In a bacteremia model of infection, irr mutant bacteria were more rapidly cleared from the blood 24 h post-infection compared to wild-type, indicating that Ihk-Irr plays an important role in GAS pathogenesis (Voyich et al., 2004).

Transcriptional regulator MtsR

Iron is important for many bacterial metabolic functions including the electron transport chain and DNA synthesis repair. However, excess iron is potentially lethal to the bacterial cell through the generation of highly toxic oxygen radicals by the Fenton reaction. In order to maintain iron homeostasis, bacteria express metal-dependent transcription regulators belonging to the Fur or the DtxR family (Andrews, Robinson and Rodriguez-Quinones 2003). GAS acquires iron from heme, hemoglobin, haptoglobin–hemoglobin complexes, ferritin, myoglobin and catalase but not transferrin or lactoferrin (Francis, Booth and Becker 1985; Eichenbaum et al., 1996; Bates et al., 2003). The GAS multimetal transport system (mts) is involved in the acquisition of manganese, zinc and iron (Janulczyk, Pallon and Bjorck 1999, 2003; Ge and Sun 2014), and is essential for GAS growth in metal-restricted media and full virulence in a mouse model of GAS infection (Janulczyk, Ricci and Bjorck 2003). Transcriptional regulator MtsR is a member of the DtxR family of metal-dependent regulatory proteins involved in the coordination of iron homeostasis, oxidative stress resistance and virulence (Jakubovics, Smith and Jenkinson 2000). Analysis of an mtsR mutant in serotype M49 GAS strain NZ131 by western blot and RNA analysis revealed that constitutive transcription of the 10-gene sia (streptococcal iron acquisition) operon (Bates et al., 2005), encoding for the hemoprotein receptor Shr, heme-binding protein Shp (Lei et al., 2002b) and an ABC transporter, mediates GAS iron uptake from hemoproteins (Bates et al., 2003). Electrophoretic mobility gel shift assays indicated that MtsR directly binds to the sia promoter in an iron- and manganese-dependent manner to repress the expression of the sia operon (Bates et al., 2005). Excess iron accumulation causes oxidative stress via the Fenton reaction (Ratledge and Dover 2000; Touati 2000; Bates et al., 2003). The mtsR mutant accumulated more intracellular iron compared to wild-type in 55Fe uptake assays in complete medium, and was hypersensitive to H2O2, indicating that MtsR plays a role in GAS resistance to oxidative stress (Bates et al., 2005). In zebrafish models of intramuscular and intraperitoneal GAS infection, the mtsR mutant was attenuated for virulence (Bates et al., 2005).

Two-component regulator CiaRH

CiaRH is a two-component regulator of GAS gene expression that is up-regulated under conditions of oxidative stress (Riani et al., 2007). Similar to the function of the sensor kinase CiaH in S. pneumoniae, the CiaH (Spy_1236) in serotype M1 GAS strain 1529 promotes growth under acidic conditions (pH 6.0) and resistance to oxidative stress following exposure to supraphysiologic concentrations of H2O2 (61 mM) for 15 min at room temperature (Tatsuno et al., 2014). Pneumococcal CiaH directly up-regulates HtrA, which is involved in resistance to oxidative stress, as described above (Seol et al., 1991; Ibrahim et al., 2004). However, in serotype M1 GAS, the expression of HtrA in the ciaH-null mutant was not down-regulated compared to wild-type, suggesting that the contribution of the CiaH sensor kinase to oxidative stress resistance may not be mediated via HtrA (Tatsuno et al., 2014).

CONCLUDING REMARKS

Bacterial pathogens have evolved a plethora of sophisticated defense mechanisms to counter oxidative damage and highly toxic ROS generated from atmospheric oxygen and the oxidative burst from phagocytes. ROS, including H2O2, hydroxyl radicals and superoxide anions, are capable of damaging proteins, DNA, membrane lipids, and may induce cell death (Nunoshiba et al., 1999; Storz and Imlay 1999; Imlay 2008). Neutrophils are the first line of defense for the host innate immune system and promote bacterial clearance at the infection site through phagocytosis, a process whereby bacteria are killed by ROS and microbicidal granule components stored within phagocytic vacuoles (Mayadas et al., 2014). Bacterial ROS resistance mechanisms include direct detoxification of harmful reactive oxygen molecules by enzymes (catalases, peroxidases and Sods), repair mechanisms and alteration of intracellular metal ion concentrations (Faulkner and Helmann 2011). GAS resistance to ROS generated by the human innate immune response enables this preeminent human pathogen to survive in the human host under the harsh conditions of oxidative stress.

Compared to other bacterial pathogens, GAS is equipped with surface-associated and secreted factors and unique molecular mechanisms to promote aerotolerance and combat ROS-induced stress in vitro and in vivo. While GAS lacks catalase, it has evolved additional mechanisms to defend against oxidative stress, including 1) novel surface and secreted molecules (M protein, HA capsule, Mac-1/IdeS and Mac-2); 2) enzymes directly involved in peroxide or superoxide detoxification (SodA, AhpC, GpoA and NoxA); 3) enzymes involved in the repair of ROS-damaged protein or DNA (HtrA/DegP and PolA1); 4) transporters involved in the maintenance of metal ion homeostasis (PmtA, Dpr, MtsABC/SiaABC and Shr); and 5) ROS response regulators (PerR, Rgg/RopB, Ihk-Irr, MtsR and CiaRH).

In Gram-positive bacteria, peroxide-sensing transcriptional regulators are responsible for regulating the oxidative stress response (Imlay 2008; Dubbs and Mongkolsuk 2012). The peroxide-sensing transcriptional regulator, PerR, is the chief peroxide responsive regulator in GAS (King, Horenstein and Caparon 2000; Ricci, Janulczyk and Bjorck 2002; Grifantini et al., 2011). Future work is needed to increase our understanding of the mechanisms of ROS resistance, the complex regulatory networks that coordinate GAS–host interactions and the response to ROS, and how these contribute to GAS pathogenesis and human infection. In addition, many of the proteins involved in ROS resistance are virulence factors. Therefore, these proteins are potential targets for the development of novel anti-GAS therapeutics and immune-boosting agents for the prevention and treatment of streptococcal diseases.