Literature DB >> 25669886

Interrogating the function of metazoan histones using engineered gene clusters.

Daniel J McKay1, Stephen Klusza2, Taylor J R Penke3, Michael P Meers3, Kaitlin P Curry3, Stephen L McDaniel3, Pamela Y Malek4, Stephen W Cooper5, Deirdre C Tatomer5, Jason D Lieb5, Brian D Strahl6, Robert J Duronio7, A Gregory Matera8.   

Abstract

Histones and their posttranslational modifications influence the regulation of many DNA-dependent processes. Although an essential role for histone-modifying enzymes in these processes is well established, defining the specific contribution of individual histone residues remains a challenge because many histone-modifying enzymes have nonhistone targets. This challenge is exacerbated by the paucity of suitable approaches to genetically engineer histone genes in metazoans. Here, we describe a platform in Drosophila for generating and analyzing any desired histone genotype, and we use it to test the in vivo function of three histone residues. We demonstrate that H4K20 is neither essential for DNA replication nor for completion of development, unlike inferences drawn from analyses of H4K20 methyltransferases. We also show that H3K36 is required for viability and H3K27 is essential for maintenance of cellular identity but not for gene activation. These findings highlight the power of engineering histones to interrogate genome structure and function in animals.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25669886      PMCID: PMC4385256          DOI: 10.1016/j.devcel.2014.12.025

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  62 in total

1.  Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

Authors:  Brian D Strahl; Patrick A Grant; Scott D Briggs; Zu-Wen Sun; James R Bone; Jennifer A Caldwell; Sahana Mollah; Richard G Cook; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

2.  Histone methyltransferase activity of a Drosophila Polycomb group repressor complex.

Authors:  Jürg Müller; Craig M Hart; Nicole J Francis; Marcus L Vargas; Aditya Sengupta; Brigitte Wild; Ellen L Miller; Michael B O'Connor; Robert E Kingston; Jeffrey A Simon
Journal:  Cell       Date:  2002-10-18       Impact factor: 41.582

3.  Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites.

Authors:  Birgit Czermin; Raffaella Melfi; Donna McCabe; Volker Seitz; Axel Imhof; Vincenzo Pirrotta
Journal:  Cell       Date:  2002-10-18       Impact factor: 41.582

4.  Role of histone H3 lysine 27 methylation in Polycomb-group silencing.

Authors:  Ru Cao; Liangjun Wang; Hengbin Wang; Li Xia; Hediye Erdjument-Bromage; Paul Tempst; Richard S Jones; Yi Zhang
Journal:  Science       Date:  2002-09-26       Impact factor: 47.728

5.  Muscle wasted: a novel component of the Drosophila histone locus body required for muscle integrity.

Authors:  Sarada Bulchand; Sree Devi Menon; Simi Elizabeth George; William Chia
Journal:  J Cell Sci       Date:  2010-07-20       Impact factor: 5.285

6.  The human and mouse replication-dependent histone genes.

Authors:  William F Marzluff; Preetam Gongidi; Keith R Woods; Jianping Jin; Lois J Maltais
Journal:  Genomics       Date:  2002-11       Impact factor: 5.736

7.  Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein.

Authors:  Andrei Kuzmichev; Kenichi Nishioka; Hediye Erdjument-Bromage; Paul Tempst; Danny Reinberg
Journal:  Genes Dev       Date:  2002-11-15       Impact factor: 11.361

8.  Identification of genomic regions required for DNA replication during Drosophila embryogenesis.

Authors:  A V Smith; J A King; T L Orr-Weaver
Journal:  Genetics       Date:  1993-11       Impact factor: 4.562

9.  A Rad53 kinase-dependent surveillance mechanism that regulates histone protein levels in S. cerevisiae.

Authors:  Akash Gunjan; Alain Verreault
Journal:  Cell       Date:  2003-11-26       Impact factor: 41.582

10.  A genetic system to assess in vivo the functions of histones and histone modifications in higher eukaryotes.

Authors:  Ufuk Günesdogan; Herbert Jäckle; Alf Herzig
Journal:  EMBO Rep       Date:  2010-09-03       Impact factor: 8.807

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  69 in total

Review 1.  Polycomb and Trithorax Group Genes in Drosophila.

Authors:  Judith A Kassis; James A Kennison; John W Tamkun
Journal:  Genetics       Date:  2017-08       Impact factor: 4.562

2.  Histone H4K20 tri-methylation at late-firing origins ensures timely heterochromatin replication.

Authors:  Julien Brustel; Nina Kirstein; Fanny Izard; Charlotte Grimaud; Paulina Prorok; Christelle Cayrou; Gunnar Schotta; Alhassan F Abdelsamie; Jérôme Déjardin; Marcel Méchali; Giuseppe Baldacci; Claude Sardet; Jean-Charles Cadoret; Aloys Schepers; Eric Julien
Journal:  EMBO J       Date:  2017-08-04       Impact factor: 11.598

3.  Epigenome editing made easy.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Nat Biotechnol       Date:  2015-06       Impact factor: 54.908

4.  A novel approach for studying histone H1 function in vivo.

Authors:  Giorgia Siriaco; Renate Deuring; Gina D Mawla; John W Tamkun
Journal:  Genetics       Date:  2015-03-23       Impact factor: 4.562

5.  Ash1 counteracts Polycomb repression independent of histone H3 lysine 36 methylation.

Authors:  Eshagh Dorafshan; Tatyana G Kahn; Alexander Glotov; Mikhail Savitsky; Matthias Walther; Gunter Reuter; Yuri B Schwartz
Journal:  EMBO Rep       Date:  2019-03-04       Impact factor: 8.807

6.  Binding of an X-Specific Condensin Correlates with a Reduction in Active Histone Modifications at Gene Regulatory Elements.

Authors:  Lena Annika Street; Ana Karina Morao; Lara Heermans Winterkorn; Chen-Yu Jiao; Sarah Elizabeth Albritton; Mohammed Sadic; Maxwell Kramer; Sevinç Ercan
Journal:  Genetics       Date:  2019-05-22       Impact factor: 4.562

7.  The SUV4-20 inhibitor A-196 verifies a role for epigenetics in genomic integrity.

Authors:  Kenneth D Bromberg; Taylor R H Mitchell; Anup K Upadhyay; Clarissa G Jakob; Manisha A Jhala; Kenneth M Comess; Loren M Lasko; Conglei Li; Creighton T Tuzon; Yujia Dai; Fengling Li; Mohammad S Eram; Alexander Nuber; Niru B Soni; Vlasios Manaves; Mikkel A Algire; Ramzi F Sweis; Maricel Torrent; Gunnar Schotta; Chaohong Sun; Michael R Michaelides; Alex R Shoemaker; Cheryl H Arrowsmith; Peter J Brown; Vijayaratnam Santhakumar; Alberto Martin; Judd C Rice; Gary G Chiang; Masoud Vedadi; Dalia Barsyte-Lovejoy; William N Pappano
Journal:  Nat Chem Biol       Date:  2017-01-23       Impact factor: 15.040

Review 8.  Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body.

Authors:  Robert J Duronio; William F Marzluff
Journal:  RNA Biol       Date:  2017-01-06       Impact factor: 4.652

Review 9.  From profiles to function in epigenomics.

Authors:  Stefan H Stricker; Anna Köferle; Stephan Beck
Journal:  Nat Rev Genet       Date:  2016-11-21       Impact factor: 53.242

Review 10.  Birth and Death of Histone mRNAs.

Authors:  William F Marzluff; Kaitlin P Koreski
Journal:  Trends Genet       Date:  2017-08-31       Impact factor: 11.639

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