Literature DB >> 25667957

UV resonance Raman investigation of the aqueous solvation dependence of primary amide vibrations.

David Punihaole1, Ryan S Jakubek, Elizabeth M Dahlburg, Zhenmin Hong, Nataliya S Myshakina, Steven Geib, Sanford A Asher.   

Abstract

We investigated the normal mode composition and the aqueous solvation dependence of the primary amide vibrations of propanamide. Infrared, normal Raman, and UV resonance Raman (UVRR) spectroscopy were applied in conjunction with density functional theory (DFT) to assign the vibrations of crystalline propanamide. We examined the aqueous solvation dependence of the primary amide UVRR bands by measuring spectra in different acetonitrile/water mixtures. As previously observed in the UVRR spectra of N-methylacetamide, all of the resonance enhanced primary amide bands, except for the Amide I (AmI), show increased UVRR cross sections as the solvent becomes water-rich. These spectral trends are rationalized by a model wherein the hydrogen bonding and the high dielectric constant of water stabilizes the ground state dipolar (-)O-C═NH2(+) resonance structure over the neutral O═C-NH2 resonance structure. Thus, vibrations with large C-N stretching show increased UVRR cross sections because the C-N displacement between the electronic ground and excited state increases along the C-N bond. In contrast, vibrations dominated by C═O stretching, such as the AmI, show a decreased displacement between the electronic ground and excited state, which result in a decreased UVRR cross section upon aqueous solvation. The UVRR primary amide vibrations can be used as sensitive spectroscopic markers to study the local dielectric constant and hydrogen bonding environments of the primary amide side chains of glutamine (Gln) and asparagine (Asn).

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Year:  2015        PMID: 25667957      PMCID: PMC5065019          DOI: 10.1021/jp511356u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  16 in total

1.  Direct UV Raman monitoring of 3(10)-helix and pi-bulge premelting during alpha-helix unfolding.

Authors:  Aleksandr V Mikhonin; Sanford A Asher
Journal:  J Am Chem Soc       Date:  2006-10-25       Impact factor: 15.419

2.  Structural characterization of polyglutamine fibrils by solid-state NMR spectroscopy.

Authors:  Robert Schneider; Miria C Schumacher; Henrik Mueller; Deepak Nand; Volker Klaukien; Henrike Heise; Dietmar Riedel; Gerhard Wolf; Elmar Behrmann; Stefan Raunser; Ralf Seidel; Martin Engelhard; Marc Baldus
Journal:  J Mol Biol       Date:  2011-07-13       Impact factor: 5.469

3.  UV resonance Raman spectroscopy monitors polyglutamine backbone and side chain hydrogen bonding and fibrillization.

Authors:  Kan Xiong; David Punihaole; Sanford A Asher
Journal:  Biochemistry       Date:  2012-07-12       Impact factor: 3.162

Review 4.  UV resonance Raman investigations of peptide and protein structure and dynamics.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher; Joseph Handen; Igor K Lednev
Journal:  Chem Rev       Date:  2012-02-15       Impact factor: 60.622

5.  New model for crystalline polyglutamine assemblies and their connection with amyloid fibrils.

Authors:  Pawel Sikorski; Edward Atkins
Journal:  Biomacromolecules       Date:  2005 Jan-Feb       Impact factor: 6.988

6.  Amyloid fibers are water-filled nanotubes.

Authors:  M F Perutz; J T Finch; J Berriman; A Lesk
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

7.  UV resonance Raman and DFT studies of arginine side chains in peptides: insights into arginine hydration.

Authors:  Zhenmin Hong; Jonathan Wert; Sanford A Asher
Journal:  J Phys Chem B       Date:  2013-06-05       Impact factor: 2.991

8.  UV Raman demonstrates that alpha-helical polyalanine peptides melt to polyproline II conformations.

Authors:  Sanford A Asher; Alexander V Mikhonin; Sergei Bykov
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

9.  Peptide secondary structure folding reaction coordinate: correlation between uv raman amide III frequency, Psi Ramachandran angle, and hydrogen bonding.

Authors:  Aleksandr V Mikhonin; Sergei V Bykov; Nataliya S Myshakina; Sanford A Asher
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

10.  A major role for side-chain polyglutamine hydrogen bonding in irreversible ataxin-3 aggregation.

Authors:  Antonino Natalello; Anna Maria Frana; Annalisa Relini; Alessandra Apicella; Gaetano Invernizzi; Carlo Casari; Alessandra Gliozzi; Silvia Maria Doglia; Paolo Tortora; Maria Elena Regonesi
Journal:  PLoS One       Date:  2011-04-13       Impact factor: 3.240

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  8 in total

1.  UV Resonance Raman Structural Characterization of an (In)soluble Polyglutamine Peptide.

Authors:  Ryan S Jakubek; Stephen E White; Sanford A Asher
Journal:  J Phys Chem B       Date:  2019-02-19       Impact factor: 2.991

2.  Ultraviolet Resonance Raman Spectroscopic Markers for Protein Structure and Dynamics.

Authors:  Ryan S Jakubek; Joseph Handen; Stephen E White; Sanford A Asher; Igor K Lednev
Journal:  Trends Analyt Chem       Date:  2017-12-11       Impact factor: 12.296

3.  Glutamine and Asparagine Side Chain Hyperconjugation-Induced Structurally Sensitive Vibrations.

Authors:  David Punihaole; Zhenmin Hong; Ryan S Jakubek; Elizabeth M Dahlburg; Steven Geib; Sanford A Asher
Journal:  J Phys Chem B       Date:  2015-09-30       Impact factor: 2.991

4.  Polyglutamine Solution-State Structural Propensity Is Repeat Length Dependent.

Authors:  Ryan S Jakubek; Riley J Workman; Stephen E White; Sanford A Asher
Journal:  J Phys Chem B       Date:  2019-05-01       Impact factor: 2.991

5.  Amide Spectral Fingerprints are Hydrogen Bonding-Mediated.

Authors:  Sara Gómez; Cettina Bottari; Franco Egidi; Tommaso Giovannini; Barbara Rossi; Chiara Cappelli
Journal:  J Phys Chem Lett       Date:  2022-06-30       Impact factor: 6.888

6.  New Insights into Quinine-DNA Binding Using Raman Spectroscopy and Molecular Dynamics Simulations.

Authors:  David Punihaole; Riley J Workman; Shiv Upadhyay; Craig Van Bruggen; Andrew J Schmitz; Theresa M Reineke; Renee R Frontiera
Journal:  J Phys Chem B       Date:  2018-10-17       Impact factor: 2.991

7.  Far-Off Resonance: Multiwavelength Raman Spectroscopy Probing Amide Bands of Amyloid-β-(37-42) Peptide.

Authors:  Martynas Talaikis; Simona Strazdaitė; Mantas Žiaunys; Gediminas Niaura
Journal:  Molecules       Date:  2020-08-04       Impact factor: 4.411

8.  Quinine copolymer reporters promote efficient intracellular DNA delivery and illuminate a protein-induced unpackaging mechanism.

Authors:  Craig Van Bruggen; David Punihaole; Allison R Keith; Andrew J Schmitz; Jakub Tolar; Renee R Frontiera; Theresa M Reineke
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 12.779

  8 in total

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