Literature DB >> 25667002

De novo plant genome assembly based on chromatin interactions: a case study of Arabidopsis thaliana.

Ting Xie1, Jue-Fei Zheng1, Sheng Liu2, Cheng Peng1, Yong-Ming Zhou2, Qing-Yong Yang3, Hong-Yu Zhang1.   

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Year:  2014        PMID： 25667002     DOI： 10.1016/j.molp.2014.12.015

Source DB:  PubMed          Journal:  Mol Plant        ISSN： 1674-2052            Impact factor:   13.164


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  24 in total

1.  Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication.

Authors:  Maojun Wang; Lili Tu; Min Lin; Zhongxu Lin; Pengcheng Wang; Qingyong Yang; Zhengxiu Ye; Chao Shen; Jianying Li; Lin Zhang; Xiaolin Zhou; Xinhui Nie; Zhonghua Li; Kai Guo; Yizan Ma; Cong Huang; Shuangxia Jin; Longfu Zhu; Xiyan Yang; Ling Min; Daojun Yuan; Qinghua Zhang; Keith Lindsey; Xianlong Zhang
Journal:  Nat Genet       Date:  2017-03-06       Impact factor: 38.330

2.  The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant.

Authors:  Jie-Dan Chen; Chao Zheng; Jian-Qiang Ma; Chen-Kai Jiang; Sezai Ercisli; Ming-Zhe Yao; Liang Chen
Journal:  Hortic Res       Date:  2020-05-01       Impact factor: 6.793

3.  Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton.

Authors:  Yan Hu; Jiedan Chen; Lei Fang; Zhiyuan Zhang; Wei Ma; Yongchao Niu; Longzhen Ju; Jieqiong Deng; Ting Zhao; Jinmin Lian; Kobi Baruch; David Fang; Xia Liu; Yong-Ling Ruan; Mehboob-Ur Rahman; Jinlei Han; Kai Wang; Qiong Wang; Huaitong Wu; Gaofu Mei; Yihao Zang; Zegang Han; Chenyu Xu; Weijuan Shen; Duofeng Yang; Zhanfeng Si; Fan Dai; Liangfeng Zou; Fei Huang; Yulin Bai; Yugao Zhang; Avital Brodt; Hilla Ben-Hamo; Xiefei Zhu; Baoliang Zhou; Xueying Guan; Shuijin Zhu; Xiaoya Chen; Tianzhen Zhang
Journal:  Nat Genet       Date:  2019-03-18       Impact factor: 38.330

4.  SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya.

Authors:  Jingjing Yue; Robert VanBuren; Juan Liu; Jingping Fang; Xingtan Zhang; Zhenyang Liao; Ching Man Wai; Xiuming Xu; Shuai Chen; Shengchen Zhang; Xiaokai Ma; Yaying Ma; Hongying Yu; Jing Lin; Ping Zhou; Yongji Huang; Ban Deng; Fang Deng; Xiaobing Zhao; Hansong Yan; Mahpara Fatima; Dessireé Zerpa-Catanho; Xiaodan Zhang; Zhicong Lin; Mei Yang; Nancy J Chen; Eric Mora-Newcomer; Patricia Quesada-Rojas; Antonio Bogantes; Víctor M Jiménez; Haibao Tang; Jisen Zhang; Ming-Li Wang; Robert E Paull; Qingyi Yu; Ray Ming
Journal:  Nat Genet       Date:  2022-05-12       Impact factor: 41.307

5.  Exploitation of Hi-C sequencing for improvement of genome assembly and in-vitro validation of differentially expressing genes in Jatropha curcas L.

Authors:  Saakshi Jalali; Nagesh Kancharla; Vijay Yepuri; Savarimuthu Arockiasamy
Journal:  3 Biotech       Date:  2020-02-04       Impact factor: 2.406

Review 6.  Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.

Authors:  Janna L Fierst
Journal:  Front Genet       Date:  2015-06-19       Impact factor: 4.599

7.  A high-quality Actinidia chinensis (kiwifruit) genome.

Authors:  Haolin Wu; Tao Ma; Minghui Kang; Fandi Ai; Junlin Zhang; Guanyong Dong; Jianquan Liu
Journal:  Hortic Res       Date:  2019-10-15       Impact factor: 6.793

8.  Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids.

Authors:  Yifei Liu; Bo Wang; Shaohua Shu; Zheng Li; Chi Song; Di Liu; Yan Niu; Jinxin Liu; Jingjing Zhang; Heping Liu; Zhigang Hu; Bisheng Huang; Xiuyu Liu; Wei Liu; Liping Jiang; Mohammad Murtaza Alami; Yuxin Zhou; Yutao Ma; Xiangxiang He; Yicheng Yang; Tianyuan Zhang; Hui Hu; Michael S Barker; Shilin Chen; Xuekui Wang; Jing Nie
Journal:  Nat Commun       Date:  2021-06-02       Impact factor: 14.919

9.  The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant.

Authors:  Jie-Dan Chen; Chao Zheng; Jian-Qiang Ma; Chen-Kai Jiang; Sezai Ercisli; Ming-Zhe Yao; Liang Chen
Journal:  Hortic Res       Date:  2020-05-01       Impact factor: 6.793

10.  Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot.

Authors:  Jia-Hui Chen; Yuan Huang; Benjamin Brachi; Quan-Zheng Yun; Wei Zhang; Wei Lu; Hong-Na Li; Wen-Qing Li; Xu-Dong Sun; Guang-Yan Wang; Jun He; Zhuo Zhou; Kai-Yun Chen; Yun-Heng Ji; Ming-Ming Shi; Wen-Guang Sun; Yong-Ping Yang; Ren-Gang Zhang; Richard J Abbott; Hang Sun
Journal:  Nat Commun       Date:  2019-11-19       Impact factor: 14.919
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