Literature DB >> 25661652

Structural basis for dodecameric assembly states and conformational plasticity of the full-length AAA+ ATPases Rvb1 · Rvb2.

Kristina Lakomek1, Gabriele Stoehr1, Alessandro Tosi1, Monika Schmailzl1, Karl-Peter Hopfner2.   

Abstract

As building blocks of diverse macromolecular complexes, the AAA+ ATPases Rvb1 and Rvb2 are crucial for many cellular activities including cancer-related processes. Their oligomeric structure and function remain unclear. We report the crystal structures of full-length heteromeric Rvb1·Rvb2 complexes in distinct nucleotide binding states. Chaetomium thermophilum Rvb1·Rvb2 assemble into hexameric rings of alternating molecules and into stable dodecamers. Intriguingly, the characteristic oligonucleotide-binding (OB) fold domains (DIIs) of Rvb1 and Rvb2 occupy unequal places relative to the compact AAA+ core ring. While Rvb1's DII forms contacts between hexamers, Rvb2's DII is rotated 100° outward, occupying lateral positions. ATP was retained bound to Rvb1 but not Rvb2 throughout purification, suggesting nonconcerted ATPase activities and nucleotide binding. Significant conformational differences between nucleotide-free and ATP-/ADP-bound states in the crystal structures and in solution suggest that the functional role of Rvb1·Rvb2 is mediated by highly interconnected structural switches. Our structures provide an atomic framework for dodecameric states and Rvb1·Rvb2's conformational plasticity.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25661652     DOI: 10.1016/j.str.2014.12.015

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  22 in total

1.  Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones.

Authors:  Coral Y Zhou; Caitlin I Stoddard; Jonathan B Johnston; Michael J Trnka; Ignacia Echeverria; Eugene Palovcak; Andrej Sali; Alma L Burlingame; Yifan Cheng; Geeta J Narlikar
Journal:  Cell Rep       Date:  2017-06-06       Impact factor: 9.423

2.  RuvbL1 and RuvbL2 enhance aggresome formation and disaggregate amyloid fibrils.

Authors:  Nava Zaarur; Xiaobin Xu; Patrick Lestienne; Anatoli B Meriin; Mark McComb; Catherine E Costello; Gary P Newnam; Rakhee Ganti; Nina V Romanova; Maruda Shanmugasundaram; Sara T N Silva; Tiago M Bandeiras; Pedro M Matias; Kirill S Lobachev; Igor K Lednev; Yury O Chernoff; Michael Y Sherman
Journal:  EMBO J       Date:  2015-08-24       Impact factor: 11.598

3.  RUVBL1/RUVBL2 ATPase Activity Drives PAQosome Maturation, DNA Replication and Radioresistance in Lung Cancer.

Authors:  Paul Yenerall; Amit K Das; Shan Wang; Rahul K Kollipara; Long Shan Li; Pamela Villalobos; Josiah Flaming; Yu-Fen Lin; Kenneth Huffman; Brenda C Timmons; Collin Gilbreath; Rajni Sonavane; Lisa N Kinch; Jaime Rodriguez-Canales; Cesar Moran; Carmen Behrens; Makoto Hirasawa; Takehiko Takata; Ryo Murakami; Koichi Iwanaga; Benjamin P C Chen; Nick V Grishin; Ganesh V Raj; Ignacio I Wistuba; John D Minna; Ralf Kittler
Journal:  Cell Chem Biol       Date:  2019-12-26       Impact factor: 8.116

4.  Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components.

Authors:  Mahadevan Lakshminarasimhan; Gina Boanca; Charles A S Banks; Gaye L Hattem; Ana E Gabriel; Brad D Groppe; Christine Smoyer; Kate E Malanowski; Allison Peak; Laurence Florens; Michael P Washburn
Journal:  Mol Cell Proteomics       Date:  2016-02-01       Impact factor: 5.911

Review 5.  AAA ATPases as therapeutic targets: Structure, functions, and small-molecule inhibitors.

Authors:  Gang Zhang; Shan Li; Kai-Wen Cheng; Tsui-Fen Chou
Journal:  Eur J Med Chem       Date:  2021-04-10       Impact factor: 7.088

6.  Chromosome Missegregation Associated with RUVBL1 Deficiency.

Authors:  Christian Gentili; Dennis Castor; Svenja Kaden; David Lauterbach; Mario Gysi; Patrick Steigemann; Daniel W Gerlich; Josef Jiricny; Stefano Ferrari
Journal:  PLoS One       Date:  2015-07-22       Impact factor: 3.240

7.  Combining Chemical Cross-linking and Mass Spectrometry of Intact Protein Complexes to Study the Architecture of Multi-subunit Protein Assemblies.

Authors:  Caroline Haupt; Tommy Hofmann; Sabine Wittig; Susann Kostmann; Argyris Politis; Carla Schmidt
Journal:  J Vis Exp       Date:  2017-11-28       Impact factor: 1.355

8.  Regulation of RUVBL1-RUVBL2 AAA-ATPases by the nonsense-mediated mRNA decay factor DHX34, as evidenced by Cryo-EM.

Authors:  Andres López-Perrote; Nele Hug; Ana González-Corpas; Carlos F Rodríguez; Marina Serna; Carmen García-Martín; Jasminka Boskovic; Rafael Fernandez-Leiro; Javier F Caceres; Oscar Llorca
Journal:  Elife       Date:  2020-11-18       Impact factor: 8.140

9.  The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.

Authors:  Noella Silva-Martin; María I Daudén; Sebastian Glatt; Niklas A Hoffmann; Panagiotis Kastritis; Peer Bork; Martin Beck; Christoph W Müller
Journal:  PLoS One       Date:  2016-01-08       Impact factor: 3.240

10.  Synergy and antagonism in regulation of recombinant human INO80 chromatin remodeling complex.

Authors:  Oliver Willhoft; Rohan Bythell-Douglas; Elizabeth A McCormack; Dale B Wigley
Journal:  Nucleic Acids Res       Date:  2016-06-02       Impact factor: 16.971

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