| Literature DB >> 25656194 |
M Alam, C I Cho, T J Choi, B Park, J G Choi, Y H Choy, S S Lee, K H Cho.
Abstract
The study was conducted to analyze the genetic parameters of somatic cell score (SCS) of Holstein cows, which is an important indicator to udder health. Test-day records of somatic cell counts (SCC) of 305-day lactation design from first to fifth lactations were collected on Holsteins in Korea during 2000 to 2012. Records of animals within 18 to 42 months, 30 to 54 months, 42 to 66 months, 54 to 78 months, and 66 to 90 months of age at the first, second, third, fourth and fifth parities were analyzed, respectively. Somatic cell scores were calculated, and adjusted for lactation production stages by Wilmink's function. Lactation averages of SCS (LSCS1 through LSCS5) were derived by further adjustments of each test-day SCS for five age groups in particular lactations. Two datasets were prepared through restrictions on number of sires/herd and dams/herd, progenies/sire, and number of parities/cow to reduce data size and attain better relationships among animals. All LSCS traits were treated as individual trait and, analyzed through multiple-trait sire models and single trait animal models via VCE 6.0 software package. Herd-year was fitted as a random effect. Age at calving was regressed as a fixed covariate. The mean LSCS of five lactations were between 3.507 and 4.322 that corresponded to a SCC range between 71,000 and 125,000 cells/mL; with coefficient of variation from 28.2% to 29.9%. Heritability estimates from sire models were within the range of 0.10 to 0.16 for all LSCS. Heritability was the highest at lactation 2 from both datasets (0.14/0.16) and lowest at lactation 5 (0.11/0.10) using sire model. Heritabilities from single trait animal model analyses were slightly higher than sire models. Genetic correlations between LSCS traits were strong (0.62 to 0.99). Very strong associations (0.96 to 0.99) were present between successive records of later lactations. Phenotypic correlations were relatively weaker (<0.55). All correlations became weaker at distant lactations. The estimated breeding values (EBVs) of LSCS traits were somewhat similar over the years for a particular lactation, but increased with lactation number increment. The lowest EBV in first lactation indicated that selection for SCS (mastitis resistance) might be better with later lactation records. It is expected that results obtained from these multi-trait lactation model analyses, being the first large scale SCS data analysis in Korea, would create a good starting step for application of advanced statistical tools for future genomic studies focusing on selection for mastitis resistance in Holsteins of Korea.Entities:
Keywords: Animal Model; Genetic Parameters; Holstein; Multiple-trait; Sire Model; Somatic Cell Score
Year: 2015 PMID: 25656194 PMCID: PMC4341072 DOI: 10.5713/ajas.13.0627
Source DB: PubMed Journal: Asian-Australas J Anim Sci ISSN: 1011-2367 Impact factor: 2.509
Structure of the somatic cell score (SCS) datasets of the Holstein cows lactation-wise1
| Item | Dataset | LSCS1 | LSCS2 | LSCS3 | LSCS4 | LSCS5 |
|---|---|---|---|---|---|---|
| No. of records | 1 | 146,738 | 153,680 | 89,135 | 46,299 | 20,976 |
| 2 | 77,065 | 80,601 | 81,954 | 41,770 | 19,165 | |
| No. of sires | 1 | 797 | 822 | 804 | 744 | 655 |
| 2 | 672 | 683 | 685 | 653 | 583 | |
| No. of dams | 1 | 112,524 | 116,671 | 71,538 | 38,861 | 18,253 |
| 2 | 63253 | 65,653 | 66,503 | 35,579 | 16,935 | |
| No. of herds | 1 | 3,818 | 3,831 | 3,748 | 3,431 | 2,833 |
| 2 | 3,126 | 3,130 | 3,130 | 3,037 | 2,619 | |
| No. of contemporary groups (herd-year) | 1 | 25,886 | 27,728 | 23,064 | 17,278 | 10,874 |
| 2 | 18,917 | 20,235 | 21,213 | 15,603 | 9,958 | |
| Average age (mo) | 1 | 25.85 | 40.02 | 53.22 | 66.00 | 78.65 |
| 2 | 25.56 | 39.21 | 53.18 | 66.03 | 78.66 |
LSCS, lactation averages of SCS
LSCS1 to 5 are consecutive lactation average somatic cell scores for 1st to 5th lactations.
Descriptive statistics1 on datasets of somatic cell scores for different LSCS traits in Holsteins between 2000 and 2012
| Trait | N | Mean | SD | Min | Max | CV |
|---|---|---|---|---|---|---|
| LSCS1 | 146,738 (77,065) | 3.507 (3.462) | 1.096 (1.075) | 0.165 (0.165) | 8.222 (8.666) | 29.9 (29.9) |
| LSCS2 | 153,680 (80,601) | 3.767 (3.662) | 1.247 (1.182) | 0.121 (0.121) | 9.774 (9.267) | 29.6 (29.7) |
| LSCS3 | 89,135 (81,954) | 4.028 (4.003) | 1.329 (1.319) | 0.365 (0.365) | 10.379 (10.379) | 28.6 (28.7) |
| LSCS4 | 46,299 (41,770) | 4.194 (4.168) | 1.412 (1.401) | 0.448 (0.448) | 10.249 (10.249) | 28.3 (28.4) |
| LSCS5 | 20,976 (19,165) | 4.322 (4.288) | 1.480 (1.473) | 0.189 (0.189) | 10.268 (9.864) | 28.2 (28.3) |
LSCS, lactation averages of somatic cell score; N, number of records; SD, standard deviation of the mean; Min, minimum score; Max, maximum score; CV, coefficient of variation.
Values without and within parentheses indicate dataset 1 and 2, respectively.
Figure 1Phenotypic trends for lactation average somatic cell scores (LSCS) in Holstein cows (LSCS1, LSCS2, LSCS3, LSCS4, and LSCS5 are traits of 1st, 2nd, 3rd, 4th, and 5th lactations, respectively).
Figure 2Genetic trends for estimated breeding value of lactation somatic cell scores (LSCS) in Holstein (LSCS1, LSCS2, LSCS3, LSCS4, and LSCS5 are traits of 1st, 2nd, 3rd, 4th, and 5th lactations, respectively).
Estimates of variance components for LSCS traits from different datasets1
| Trait | Parameter | Sire model | Animal model | ||
|---|---|---|---|---|---|
|
|
| ||||
| Dataset 1 | Dataset 2 | Dataset 1 | Dataset 2 | ||
| LSCS1 | G | 0.037 | 0.040 | 0.235 | 0.258 |
| HY | 0.117 | 0.098 | 0.171 | 0.158 | |
| E | 1.045 | 1.195 | 0.839 | 0.781 | |
| LSCS2 | G | 0.054 | 0.053 | 0.317 | 0.303 |
| HY | 0.181 | 0.116 | 0.331 | 0.302 | |
| E | 1.272 | 1.195 | 0.957 | 0.837 | |
| LSCS3 | G | 0.062 | 0.056 | 0.343 | 0.333 |
| HY | 0.164 | 0.134 | 0.387 | 0.379 | |
| E | 1.524 | 1.510 | 1.085 | 1.081 | |
| LSCS4 | G | 0.074 | 0.070 | 0.348 | 0.327 |
| HY | 0.151 | 0.135 | 0.435 | 0.433 | |
| E | 1.811 | 1.793 | 1.249 | 1.250 | |
| LSCS5 | G | 0.064 | 0.055 | 0.201 | 0.159 |
| HY | 0.214 | 0.204 | 0.538 | 0.533 | |
| E | 2.008 | 2.006 | 1.452 | 1.489 | |
LSCS, lactation averages of somatic cell score; G, additive genetic variance; HY, herd-year class; E, residual variance.
LSCS1 to 5, lactation average somatic cell score traits for 1st to 5th parity.
Variance estimates corresponded to single-trait and multiple-trait analyses using animal and sire models, respectively.
Heritability estimates of somatic cell scores of Holstein through multiple-trait (sire model) and single-trait (animal model) lactation analyses1
| Trait | Sire model | Animal model | ||
|---|---|---|---|---|
|
|
| |||
| Dataset 1 | Dataset 2 | Dataset 1 | Dataset 2 | |
| LSCS1 | 0.12 | 0.14 | 0.19 | 0.22 |
| LSCS2 | 0.14 | 0.16 | 0.20 | 0.21 |
| LSCS3 | 0.13 | 0.14 | 0.19 | 0.19 |
| LSCS4 | 0.14 | 0.14 | 0.17 | 0.16 |
| LSCS5 | 0.11 | 0.10 | 0.10 | 0.07 |
LSCS1 to 5 are lactation average somatic cell scores for 1st to 5th lactations, respectively.
Genetic (upper diagonal) and phenotypic (lower diagonal) correlations between Holstein lactations using multiple-trait lactation sire models1
| Trait | LSCS1 | LSCS2 | LSCS3 | LSCS4 | LSCS5 |
|---|---|---|---|---|---|
| LSCS1 | - | 0.82 (0.80) | 0.73 (0.72) | 0.68 (0.68) | 0.62 (0.59) |
| LSCS2 | 0.34 (0.36) | - | 0.97 (0.96) | 0.89 (0.87) | 0.83 (0.78) |
| LSCS3 | 0.27 (0.28) | 0.47 (0.48) | - | 0.96 (0.96) | 0.91 (0.89) |
| LSCS4 | 0.25 (0.25) | 0.39 (0.40) | 0.51 (0.51) | - | 0.99 (0.98) |
| LSCS5 | 0.22 (0.22) | 0.34 (0.34) | 0.44 (0.44) | 0.54 (0.54) | - |
LSCS1 to 5, lactation average somatic cell scores for 1st to 5th lactations.
Values without and within parentheses indicate estimates obtained using datasets 1 and 2, respectively.