Literature DB >> 25654319

Mimic of the green fluorescent protein β-barrel: photophysics and dynamics of confined chromophores defined by a rigid porous scaffold.

Derek E Williams1, Ekaterina A Dolgopolova, Perry J Pellechia, Andrei Palukoshka, Thomas J Wilson, Rui Tan, Josef M Maier, Andrew B Greytak, Mark D Smith, Jeanette A Krause, Natalia B Shustova.   

Abstract

Chromophores with a benzylidene imidazolidinone core define the emission profile of commonly used biomarkers such as the green fluorescent protein (GFP) and its analogues. In this communication, artificially engineered porous scaffolds have been shown to mimic the protein β-barrel structure, maintaining green fluorescence response and conformational rigidity of GFP-like chromophores. In particular, we demonstrated that the emission maximum in our artificial scaffolds is similar to those observed in the spectra of the natural GFP-based systems. To correlate the fluorescence response with a structure and perform a comprehensive analysis of the prepared photoluminescent scaffolds, (13)C cross-polarization magic angle spinning solid-state (CP-MAS) NMR spectroscopy, powder and single-crystal X-ray diffraction, and time-resolved fluorescence spectroscopy were employed. Quadrupolar spin-echo solid-state (2)H NMR spectroscopy, in combination with theoretical calculations, was implemented to probe low-frequency vibrational dynamics of the confined chromophores, demonstrating conformational restrictions imposed on the coordinatively trapped chromophores. Because of possible tunability of the introduced scaffolds, these studies could foreshadow utilization of the presented approach toward directing a fluorescence response in artificial GFP mimics, modulating a protein microenvironment, and controlling nonradiative pathways through chromophore dynamics.

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Year:  2015        PMID: 25654319     DOI: 10.1021/ja5131269

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Modulation of Fluorescent Protein Chromophores To Detect Protein Aggregation with Turn-On Fluorescence.

Authors:  Yu Liu; Charles H Wolstenholme; Gregory C Carter; Hongbin Liu; Hang Hu; Leeann S Grainger; Kun Miao; Matthew Fares; Conner A Hoelzel; Hemant P Yennawar; Gang Ning; Manyu Du; Lu Bai; Xiaosong Li; Xin Zhang
Journal:  J Am Chem Soc       Date:  2018-06-12       Impact factor: 15.419

2.  AggFluor: Fluorogenic Toolbox Enables Direct Visualization of the Multi-Step Protein Aggregation Process in Live Cells.

Authors:  Charles H Wolstenholme; Hang Hu; Songtao Ye; Brian E Funk; Divya Jain; Chia-Heng Hsiung; Gang Ning; Yu Liu; Xiaosong Li; Xin Zhang
Journal:  J Am Chem Soc       Date:  2020-10-05       Impact factor: 15.419

3.  High-Efficiency Fluorescence through Bioinspired Supramolecular Self-Assembly.

Authors:  Yu Chen; Asuka A Orr; Kai Tao; Zhibin Wang; Antonella Ruggiero; Linda J W Shimon; Lee Schnaider; Alicia Goodall; Sigal Rencus-Lazar; Sharon Gilead; Inna Slutsky; Phanourios Tamamis; Zhan'ao Tan; Ehud Gazit
Journal:  ACS Nano       Date:  2020-02-07       Impact factor: 15.881

4.  Excited-state locked amino analogues of the green fluorescent protein chromophore with a giant Stokes shift.

Authors:  Snizhana O Zaitseva; Dilara A Farkhutdinova; Nadezhda S Baleeva; Alexander Yu Smirnov; Marina B Zagudaylova; Aleksander M Shakhov; Artyom A Astafiev; Mikhail S Baranov; Anastasia V Bochenkova
Journal:  RSC Adv       Date:  2019-11-26       Impact factor: 3.361

5.  Jolly green MOF: confinement and photoactivation of photosystem I in a metal-organic framework.

Authors:  Tyler H Bennett; Michael D Vaughn; Seyyed Ali Davari; Kiman Park; Dibyendu Mukherjee; Bamin Khomami
Journal:  Nanoscale Adv       Date:  2018-10-11

6.  Fulleretic Well-Defined Scaffolds: Donor-Fullerene Alignment Through Metal Coordination and Its Effect on Photophysics.

Authors:  Derek E Williams; Ekaterina A Dolgopolova; Danielle C Godfrey; Evgeniya D Ermolaeva; Perry J Pellechia; Andrew B Greytak; Mark D Smith; Stanislav M Avdoshenko; Alexey A Popov; Natalia B Shustova
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-06       Impact factor: 15.336

7.  DNA mimics of red fluorescent proteins (RFP) based on G-quadruplex-confined synthetic RFP chromophores.

Authors:  Guangfu Feng; Chao Luo; Haibo Yi; Lin Yuan; Bin Lin; Xingyu Luo; Xiaoxiao Hu; Honghui Wang; Chunyang Lei; Zhou Nie; Shouzhuo Yao
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

8.  Co₂ and Co₃ Mixed Cluster Secondary Building Unit Approach toward a Three-Dimensional Metal-Organic Framework with Permanent Porosity.

Authors:  Meng-Yao Chao; Wen-Hua Zhang; Jian-Ping Lang
Journal:  Molecules       Date:  2018-03-25       Impact factor: 4.411

9.  Nanostructured and oriented metal-organic framework films enabling extreme surface wetting properties.

Authors:  Andre Mähringer; Julian M Rotter; Dana D Medina
Journal:  Beilstein J Nanotechnol       Date:  2019-10-09       Impact factor: 3.649

  9 in total

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