Literature DB >> 25652106

Activity-based protein profiling: recent advances in probe development and applications.

Pengyu Yang1, Kai Liu.   

Abstract

The completion of the human genome sequencing project has provided a wealth of new information regarding the genomic blueprint of the cell. Although, to date, there are roughly 20,000 genes in the human genome, the functions of only a handful of proteins are clear. The major challenge lies in translating genomic information into an understanding of their cellular functions. The recently developed activity-based protein profiling (ABPP) is an unconventional approach that is complementary for gene expression analysis and an ideal utensil in decoding this overflow of genomic information. This approach makes use of synthetic small molecules that covalently modify a set of related proteins and subsequently facilitates identification of the target protein, enabling rapid biochemical analysis and inhibitor discovery. This tutorial review introduces recent advances in the field of ABPP and its applications.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  activity-based protein profiling; bioorthogonal; chemical proteomics; click chemistry; tandem labeling

Mesh:

Substances:

Year:  2015        PMID: 25652106     DOI: 10.1002/cbic.201402582

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  18 in total

Review 1.  Non-kinase targets of protein kinase inhibitors.

Authors:  Lenka Munoz
Journal:  Nat Rev Drug Discov       Date:  2017-03-10       Impact factor: 84.694

Review 2.  Kinase inhibitors: the road ahead.

Authors:  Fleur M Ferguson; Nathanael S Gray
Journal:  Nat Rev Drug Discov       Date:  2018-03-16       Impact factor: 84.694

Review 3.  Click Chemistry in Proteomic Investigations.

Authors:  Christopher G Parker; Matthew R Pratt
Journal:  Cell       Date:  2020-02-13       Impact factor: 41.582

4.  Alkyne Ligation Handles: Propargylation of Hydroxyl, Sulfhydryl, Amino, and Carboxyl Groups via the Nicholas Reaction.

Authors:  Sarah M Wells; John C Widen; Daniel A Harki; Kay M Brummond
Journal:  Org Lett       Date:  2016-08-29       Impact factor: 6.005

5.  Activity-Based Probes for HECT E3 Ubiquitin Ligases.

Authors:  Robert Byrne; Thomas Mund; Julien D F Licchesi
Journal:  Chembiochem       Date:  2017-06-28       Impact factor: 3.164

6.  Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic Archaea.

Authors:  Susanne Zweerink; Verena Kallnik; Sabrina Ninck; Sabrina Nickel; Julia Verheyen; Marcel Blum; Alexander Wagner; Ingo Feldmann; Albert Sickmann; Sonja-Verena Albers; Christopher Bräsen; Farnusch Kaschani; Bettina Siebers; Markus Kaiser
Journal:  Nat Commun       Date:  2017-05-08       Impact factor: 14.919

7.  Activity-Based Probes for 15-Lipoxygenase-1.

Authors:  Nikolaos Eleftheriadis; Stephanie A Thee; Martijn R H Zwinderman; Niek G J Leus; Frank J Dekker
Journal:  Angew Chem Int Ed Engl       Date:  2016-09-09       Impact factor: 15.336

8.  4,7-Disubstituted 7H-Pyrrolo[2,3-d]pyrimidines and Their Analogs as Antiviral Agents against Zika Virus.

Authors:  Ruben Soto-Acosta; Eunkyung Jung; Li Qiu; Daniel J Wilson; Robert J Geraghty; Liqiang Chen
Journal:  Molecules       Date:  2021-06-22       Impact factor: 4.411

Review 9.  Chemical proteomics approaches for identifying the cellular targets of natural products.

Authors:  M H Wright; S A Sieber
Journal:  Nat Prod Rep       Date:  2016-05-04       Impact factor: 13.423

10.  (-)-Gochnatiolide B, synthesized from dehydrocostuslactone, exhibits potent anti-bladder cancer activity in vitro and in vivo.

Authors:  Yuwen Chen; Wenhua Li; Zhongqiu Zeng; Yaxiong Tang
Journal:  Sci Rep       Date:  2018-06-11       Impact factor: 4.379

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