Literature DB >> 25651062

An acetyl-methyl switch drives a conformational change in p53.

Qiong Tong1, Sharlyn J Mazur2, Hector Rincon-Arano3, Scott B Rothbart4, Dmitry M Kuznetsov5, Gaofeng Cui6, Wallace H Liu1, Yantenew Gete2, Brianna J Klein1, Lisa Jenkins2, Georges Mer6, Andrei G Kutateladze5, Brian D Strahl4, Mark Groudine7, Ettore Appella2, Tatiana G Kutateladze8.   

Abstract

Individual posttranslational modifications (PTMs) of p53 mediate diverse p53-dependent responses; however, much less is known about the combinatorial action of adjacent modifications. Here, we describe crosstalk between the early DNA damage response mark p53K382me2 and the surrounding PTMs that modulate binding of p53 cofactors, including 53BP1 and p300. The 1.8 Å resolution crystal structure of the tandem Tudor domain (TTD) of 53BP1 in complex with p53 peptide acetylated at K381 and dimethylated at K382 (p53K381acK382me2) reveals that the dual PTM induces a conformational change in p53. The α-helical fold of p53K381acK382me2 positions the side chains of R379, K381ac, and K382me2 to interact with TTD concurrently, reinforcing a modular design of double PTM mimetics. Biochemical and nuclear magnetic resonance analyses show that other surrounding PTMs, including phosphorylation of serine/threonine residues of p53, affect association with TTD. Our findings suggest a novel PTM-driven conformation switch-like mechanism that may regulate p53 interactions with binding partners.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25651062      PMCID: PMC4317571          DOI: 10.1016/j.str.2014.12.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  36 in total

1.  The MBT repeats of L3MBTL1 link SET8-mediated p53 methylation at lysine 382 to target gene repression.

Authors:  Lisandra E West; Siddhartha Roy; Karin Lachmi-Weiner; Ryo Hayashi; Xiaobing Shi; Ettore Appella; Tatiana G Kutateladze; Or Gozani
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

2.  Specific inhibition of Mdm2-mediated neddylation by Tip60.

Authors:  Christoph Dohmesen; Max Koeppel; Matthias Dobbelstein
Journal:  Cell Cycle       Date:  2007-10-16       Impact factor: 4.534

3.  Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage.

Authors:  Eric Batchelor; Caroline S Mock; Irun Bhan; Alexander Loewer; Galit Lahav
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

4.  Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.

Authors:  Maria Victoria Botuyan; Joseph Lee; Irene M Ward; Ja-Eun Kim; James R Thompson; Junjie Chen; Georges Mer
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

5.  p53 C-terminal phosphorylation by CHK1 and CHK2 participates in the regulation of DNA-damage-induced C-terminal acetylation.

Authors:  Yi-Hung Ou; Pei-Han Chung; Te-Ping Sun; Sheau-Yann Shieh
Journal:  Mol Biol Cell       Date:  2005-01-19       Impact factor: 4.138

6.  Regulation of p53 activity through lysine methylation.

Authors:  Sergei Chuikov; Julia K Kurash; Jonathan R Wilson; Bing Xiao; Neil Justin; Gleb S Ivanov; Kristine McKinney; Paul Tempst; Carol Prives; Steven J Gamblin; Nickolai A Barlev; Danny Reinberg
Journal:  Nature       Date:  2004-11-03       Impact factor: 49.962

7.  Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks.

Authors:  Yentram Huyen; Omar Zgheib; Richard A Ditullio; Vassilis G Gorgoulis; Panayotis Zacharatos; Tom J Petty; Emily A Sheston; Hestia S Mellert; Elena S Stavridi; Thanos D Halazonetis
Journal:  Nature       Date:  2004-11-03       Impact factor: 49.962

8.  Structural mechanism of the bromodomain of the coactivator CBP in p53 transcriptional activation.

Authors:  Shiraz Mujtaba; Yan He; Lei Zeng; Sherry Yan; Olga Plotnikova; Roberto Sanchez; Nancy J Zeleznik-Le; Ze'ev Ronai; Ming-Ming Zhou
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

9.  Modulation of p53 function by SET8-mediated methylation at lysine 382.

Authors:  Xiaobing Shi; Ioulia Kachirskaia; Hiroshi Yamaguchi; Lisandra E West; Hong Wen; Evelyn W Wang; Sucharita Dutta; Ettore Appella; Or Gozani
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

10.  Acetylation of p53 augments its site-specific DNA binding both in vitro and in vivo.

Authors:  Jianyuan Luo; Muyang Li; Yi Tang; Monika Laszkowska; Robert G Roeder; Wei Gu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

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  11 in total

1.  Effects of Acetylation and Phosphorylation on Subunit Interactions in Three Large Eukaryotic Complexes.

Authors:  Nikolina Šoštarić; Francis J O'Reilly; Piero Giansanti; Albert J R Heck; Anne-Claude Gavin; Vera van Noort
Journal:  Mol Cell Proteomics       Date:  2018-09-04       Impact factor: 5.911

2.  Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations.

Authors:  Morad Mustafa; Mohammed Gharaibeh
Journal:  Protein J       Date:  2022-01-31       Impact factor: 2.371

Review 3.  The Tail That Wags the Dog: How the Disordered C-Terminal Domain Controls the Transcriptional Activities of the p53 Tumor-Suppressor Protein.

Authors:  Oleg Laptenko; David R Tong; James Manfredi; Carol Prives
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

Review 4.  p53 shades of Hippo.

Authors:  Noa Furth; Yael Aylon; Moshe Oren
Journal:  Cell Death Differ       Date:  2017-10-06       Impact factor: 15.828

5.  Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions.

Authors:  Nikolina Šoštarić; Vera van Noort
Journal:  PLoS Comput Biol       Date:  2021-05-12       Impact factor: 4.475

Review 6.  p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure-Function Continuum Concept.

Authors:  Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2016-11-10       Impact factor: 5.923

Review 7.  Mechanisms of transcriptional regulation by p53.

Authors:  Kelly D Sullivan; Matthew D Galbraith; Zdenek Andrysik; Joaquin M Espinosa
Journal:  Cell Death Differ       Date:  2017-11-10       Impact factor: 15.828

Review 8.  Reading between the Lines: "ADD"-ing Histone and DNA Methylation Marks toward a New Epigenetic "Sum".

Authors:  Kyung-Min Noh; C David Allis; Haitao Li
Journal:  ACS Chem Biol       Date:  2015-12-07       Impact factor: 5.100

9.  A Chromatin-Focused siRNA Screen for Regulators of p53-Dependent Transcription.

Authors:  Morgan A Sammons; Jiajun Zhu; Shelley L Berger
Journal:  G3 (Bethesda)       Date:  2016-08-09       Impact factor: 3.154

10.  Design and Construction of a Focused DNA-Encoded Library for Multivalent Chromatin Reader Proteins.

Authors:  Justin M Rectenwald; Shiva Krishna Reddy Guduru; Zhao Dang; Leonard B Collins; Yi-En Liao; Jacqueline L Norris-Drouin; Stephanie H Cholensky; Kyle W Kaufmann; Scott M Hammond; Dmitri B Kireev; Stephen V Frye; Kenneth H Pearce
Journal:  Molecules       Date:  2020-02-22       Impact factor: 4.411

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