| Literature DB >> 25649372 |
Jina Zhang-Salomons1,2,3, Greg Salomons4,5,6.
Abstract
BACKGROUND: Clinical data gathered for administrative purposes often lack sufficient information to separate the records of radiotherapy given for palliation from those given for cure. An absence, incompleteness, or inaccuracy of such information could hinder or bias the study of the utilization and outcome of radiotherapy. This study has three specific purposes: 1) develop a method to determine the therapeutic role of radiotherapy (TRR); 2) assess the accuracy of the method; 3) report the quality of the information on treatment "intent" recorded in the clinical data in Ontario, Canada. A general purpose is to use this study as a prototype to demonstrate and test a method to assess the quality of administrative data.Entities:
Mesh:
Year: 2015 PMID: 25649372 PMCID: PMC4350984 DOI: 10.1186/1471-2288-15-11
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Figure 1The treatment records used in the induction and validation of classification rules.
Classification variables used in decision tree analysis
| Classification variables | Description | Completeness * | |
|---|---|---|---|
| Curative | Palliative | ||
| Fraction size (cGy) | Median: 200 | Median: 300 | 99% |
| Time from the first treatment (no. of days) | Median: 19 | Median: 9 | 100% |
| Body-region group | 91% | ||
| Chest | 123,378 (91%) | 12144 (9%) | |
| Organs and tissues in pelvis region | 78,220 (97%) | 2211 (3%) | |
| Pelvis – single side | 1,057 (44%) | 1332 (56%) | |
| Pelvis – both sides | 27,902 (91%) | 2685 (9%) | |
| Brain | 9,177 (52%) | 8589 (48%) | |
| Neck | 16,378 (92%) | 1336 (8%) | |
| Head | 14,256 (93%) | 1020 (7%) | |
| Bone – spine, limb, chest, head | 3,817 (21%) | 14353 (79%) | |
| Abdomen | 7,206 (73%) | 2614 (27%) | |
| Skin | 983 (73%) | 357 (27%) | |
| Other regions | 7,116 (96%) | 262 (4%) | |
| Disease site group | 97% | ||
| Head/neck(140–144,146-149,160,161) | 26,090 (97%) | 924 (3%) | |
| Other head/neck | 3,735 (92%) | 309 (8%) | |
| Colon/intestines (152,153) | 1,782 (58%) | 1,271 (42%) | |
| Rectum (154) | 17,585 (91%) | 1,709 (9%) | |
| Liver (155) | 140 (38%) | 226 (62%) | |
| Other GI (150,151,156-159) | 6,736 (74%) | 2,349 (26%) | |
| Lung (162–165) | 18,850 (55%) | 1,5319 (45%) | |
| Bone (170) | 245 (68%) | 114 (32%) | |
| Soft tissue (171) | 1,942 (86%) | 303 (14%) | |
| Melanoma (172) | 1,390 (54%) | 1,204 (46%) | |
| skin (173) | 134(85%) | 23(15%) | |
| Breast (174,175) | 97,728 (93%) | 6,897 (7%) | |
| Ovary (183) | 461 (46%) | 541 (54%) | |
| Other GYN (179–182,184) | 1,2791 (90%) | 1,391 (10%) | |
| Prostate/Testis/Penis (185–187) | 74,061 (95%) | 3,896 (5%) | |
| Bladder (188) | 2,206 (67%) | 1,075 (33%) | |
| Kidney (189) | 464 (24%) | 1,504 (76%) | |
| CNS (190–192) | 7,524 (93%) | 604 (7%) | |
| Thyroid/Endo (193,194) | 727 (70%) | 318 (30%) | |
| Unspecified group 1 (195,196) | 1,271 (88%) | 176 (12%) | |
| Unspecified group 2 (197–199) | 4,152 (66%) | 2,153 (34%) | |
| Lymphoid/leukemia(200,202,204-208) | 7,295 (71%) | 2,933 (29%) | |
| Hodgkin’s disease (201) | 1,697 (94%) | 116 (6%) | |
| Myeloma (203) | 484 (24%) | 1,548 (76%) | |
*The completeness was calculated using all records of treatment given between 2005 and 2008; while the summary statistics were based on the records used in decision tree analysis, which are randomly selected from the records without missing data.
Figure 2The classification tree that predicts the therapeutic role of radiotherapy using treatment parameters.
Model accuracy assessed by internal validation for 7 different models
| Model | Classification variables | Number of rules | Accuracy (CI) | Confusion matrix | |
|---|---|---|---|---|---|
| Model 1 | Fraction-size | 10 | 94.6% (94.4%, 94.7%) | C to P*: | 2.2% |
| Disease site | P to C: | 3.3% | |||
| Body-region | |||||
| Time from the 1st treatment | |||||
| Model 2 | Fraction-size | 13 | 94.5% (94.3%, 94.6%) | C to P: | 1.9% |
| Body-region | P to C: | 3.6% | |||
| Time from the 1st treatment | |||||
| Model 3 | Fraction-size | 10 | 94.2% (94.0%, 94.3%) | C to P: | 2.4% |
| Disease site | P to C: | 3.4% | |||
| Time from the 1st treatment | |||||
| Model 4 | Fraction-size | 8 | 94.1% (94.0%, 94.3%) | C to P: | 2.0% |
| Time from the 1st treatment | P to C: | 3.8% | |||
| Model 5 | Disease site | 18 | 92.0% (91.8%, 92.2%) | C to P: | 3.0% |
| Body-region | P to C: | 4.9% | |||
| Time from the 1st treatment | |||||
| Model 6 | Body-region | 11 | 91.0% (90.8%, 91.2%) | C to P: | 2.4% |
| Time from the 1st treatment | P to C: | 6.6% | |||
| Model 7 | Disease site | 10 | 90.1% (89.9%, 90.3%) | C to P: | 3.8% |
| Time from the 1st treatment | P to C: | 6.2% |
*’C’ refers to curative, ‘P’ refers to palliative.
Validity of the classification rules based on a manual audit of the treatment records of 1,000 randomly selected patients
| Sample A* | Sample B** | Entire sample*** | |
|---|---|---|---|
| Sensitivity (palliative) | 95.5 (94.2,96.8) | 36.3 (34.0,38.5) | 84.2 (82.9,85.5) |
| Specificity (curative) | 99.5 (99.4,99.7) | 66.0 (63.4,68.5) | 98.5 (98.3,98.7) |
| Positive predictive value (palliative) | 97.3 (96.3,98.3) | 58.6 (55.8,61.5) | 92.3 (91.3,93.3) |
| Negative predictive value (curative) | 99.2 (99.0,99.4) | 43.8 (41.6,45.9) | 96.8 (96.5,97.0) |
*From the records for which the classification rules and the intent-flag agreed.
**From the records for which the classification rules and the intent-flag disagreed.
***Adjusted for sampling stratification.
The performance of the classification rules and the intent-flag for the records of treatments given between 1990 and 2008 in Ontario
| 2005-2008 | ||||
|---|---|---|---|---|
| Entire sample* | Sample B only** | |||
| Classification rules | Intent-flag | Classification rules | Intent-flag | |
| (95% CI) | (95% CI) | (95% CI) | (95% CI) | |
| % correct | 95.8 (95.5, 96.1) | 92.5 (92.2, 92.7) | 96.8 (96.6, 96.9) | 93.4 (93.2, 93.5) |
| % incorrect | 4.2 (3.9, 4.4) | 4.1 (3.9, 4.4) | 3.2 (3.1, 3.4) | 3.2 (3.1, 3.4) |
| % missing | 0 | 3.4*** | 0 | 3.4 |
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| % correct | 96.1 (95.8, 96.3) | 77.5 (77.2, 77.7) | 97.1 (96.9, 97.2) | 78.3 (78.1, 78.4) |
| % incorrect | 3.9 (3.7, 4.2) | 3.7 (3.5, 4.0) | 2.9 (2.8, 3.1) | 2.9 (2.8, 3.1) |
| % missing | 0 | 18.8 | 0 | 18.8 |
*Estimated through the audit of a random sample drawn from all treatment records.
**Estimated through the audit of a random sample drawn from the records for which the classification rules and the intent-flag disagreed.
***CI was not provided because the percentage of records missing intent was observed instead of being estimated through the audit.