Literature DB >> 25647718

Pretreatment and integrated analysis of spectral data reveal seaweed similarities based on chemical diversity.

Feifei Wei1, Kengo Ito, Kenji Sakata, Yasuhiro Date, Jun Kikuchi.   

Abstract

Extracting useful information from high dimensionality and large data sets is a major challenge for data-driven approaches. The present study was aimed at developing novel integrated analytical strategies for comprehensively characterizing seaweed similarities based on chemical diversity. The chemical compositions of 107 seaweed and 2 seagrass samples were analyzed using multiple techniques, including Fourier transform infrared (FT-IR) and solid- and solution-state nuclear magnetic resonance (NMR) spectroscopy, thermogravimetry-differential thermal analysis (TG-DTA), inductively coupled plasma-optical emission spectrometry (ICP-OES), CHNS/O total elemental analysis, and isotope ratio mass spectrometry (IR-MS). The spectral data were preprocessed using non-negative matrix factorization (NMF) and NMF combined with multivariate curve resolution-alternating least-squares (MCR-ALS) methods in order to separate individual component information from the overlapping and/or broad spectral peaks. Integrated analysis of the preprocessed chemical data demonstrated distinct discrimination of differential seaweed species. Further network analysis revealed a close correlation between the heavy metal elements and characteristic components of brown algae, such as cellulose, alginic acid, and sulfated mucopolysaccharides, providing a componential basis for its metal-sorbing potential. These results suggest that this integrated analytical strategy is useful for extracting and identifying the chemical characteristics of diverse seaweeds based on large chemical data sets, particularly complicated overlapping spectral data.

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Year:  2015        PMID: 25647718     DOI: 10.1021/ac504211n

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  11 in total

1.  Chemometric Analysis of NMR Spectra and Machine Learning to Investigate Membrane Fouling.

Authors:  Daiki Yokoyama; Sosei Suzuki; Taiga Asakura; Jun Kikuchi
Journal:  ACS Omega       Date:  2022-04-07

2.  FoodPro: A Web-Based Tool for Evaluating Covariance and Correlation NMR Spectra Associated with Food Processes.

Authors:  Eisuke Chikayama; Ryo Yamashina; Keiko Komatsu; Yuuri Tsuboi; Kenji Sakata; Jun Kikuchi; Yasuyo Sekiyama
Journal:  Metabolites       Date:  2016-10-19

3.  Application of kernel principal component analysis and computational machine learning to exploration of metabolites strongly associated with diet.

Authors:  Yuka Shiokawa; Yasuhiro Date; Jun Kikuchi
Journal:  Sci Rep       Date:  2018-02-21       Impact factor: 4.379

4.  Large-Scale Evaluation of Major Soluble Macromolecular Components of Fish Muscle from a Conventional 1H-NMR Spectral Database.

Authors:  Feifei Wei; Minoru Fukuchi; Kengo Ito; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Molecules       Date:  2020-04-23       Impact factor: 4.411

5.  Fish ecotyping based on machine learning and inferred network analysis of chemical and physical properties.

Authors:  Feifei Wei; Kengo Ito; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Sci Rep       Date:  2021-02-12       Impact factor: 4.379

6.  Integrative measurement analysis via machine learning descriptor selection for investigating physical properties of biopolymers in hairs.

Authors:  Ayari Takamura; Kaede Tsukamoto; Kenji Sakata; Jun Kikuchi
Journal:  Sci Rep       Date:  2021-12-21       Impact factor: 4.379

7.  Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): a Data-Driven Approach across Metabolic Processes.

Authors:  Hiromi Motegi; Yuuri Tsuboi; Ayako Saga; Tomoko Kagami; Maki Inoue; Hideaki Toki; Osamu Minowa; Tetsuo Noda; Jun Kikuchi
Journal:  Sci Rep       Date:  2015-11-04       Impact factor: 4.379

8.  Visualization of Microfloral Metabolism for Marine Waste Recycling.

Authors:  Tatsuki Ogura; Reona Hoshino; Yasuhiro Date; Jun Kikuchi
Journal:  Metabolites       Date:  2016-01-27

9.  Improvement of physical, chemical, and biological properties of aridisol from Botswana by the incorporation of torrefied biomass.

Authors:  Tatsuki Ogura; Yasuhiro Date; Masego Masukujane; Tidimalo Coetzee; Kinya Akashi; Jun Kikuchi
Journal:  Sci Rep       Date:  2016-06-17       Impact factor: 4.379

10.  Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem.

Authors:  Feifei Wei; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Sci Rep       Date:  2018-02-22       Impact factor: 4.379

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