Literature DB >> 25646668

Transcriptional networks-crops, clocks, and abiotic stress.

Malia A Gehan1, Kathleen Greenham2, Todd C Mockler1, C Robertson McClung3.   

Abstract

Several factors affect the yield potential and geographical range of crops including the circadian clock, water availability, and seasonal temperature changes. In order to sustain and increase plant productivity on marginal land in the face of both biotic and abiotic stresses, we need to more efficiently generate stress-resistant crops through marker-assisted breeding, genetic modification, and new genome-editing technologies. To leverage these strategies for producing the next generation of crops, future transcriptomic data acquisition should be pursued with an appropriate temporal design and analyzed with a network-centric approach. The following review focuses on recent developments in abiotic stress transcriptional networks in economically important crops and will highlight the utility of correlation-based network analysis and applications.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2015        PMID: 25646668     DOI: 10.1016/j.pbi.2015.01.004

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  33 in total

Review 1.  Integrating circadian dynamics with physiological processes in plants.

Authors:  Kathleen Greenham; C Robertson McClung
Journal:  Nat Rev Genet       Date:  2015-09-15       Impact factor: 53.242

2.  A critical role of the soybean evening complex in the control of photoperiod sensitivity and adaptation.

Authors:  Tiantian Bu; Sijia Lu; Kai Wang; Lidong Dong; Shilin Li; Qiguang Xie; Xiaodong Xu; Qun Cheng; Liyu Chen; Chao Fang; Haiyang Li; Baohui Liu; James L Weller; Fanjiang Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

3.  Analysis of bHLH coding genes using gene co-expression network approach.

Authors:  Swati Srivastava; Garima Singh; Noopur Singh; Gaurava Srivastava; Ashok Sharma
Journal:  Mol Biol Rep       Date:  2016-05-13       Impact factor: 2.316

4.  Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses.

Authors:  Joseph S Tolsma; Jacob J Torres; Jeffrey T Richards; Imara Y Perera; Colleen J Doherty
Journal:  Methods Mol Biol       Date:  2022

5.  Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes.

Authors:  Roohollah Shamloo-Dashtpagerdi; Hooman Razi; Esmaeil Ebrahimie; Ali Niazi
Journal:  Mol Biol Rep       Date:  2018-07-23       Impact factor: 2.316

6.  Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance.

Authors:  Jin A Kim; Ha-Eun Jung; Joon Ki Hong; Victor Hermand; C Robertson McClung; Yeon-Hee Lee; Joo Yeol Kim; Soo In Lee; Mi-Jeong Jeong; Jungsun Kim; DaeJin Yun; WeoYeon Kim
Journal:  Plant Cell Rep       Date:  2016-06-13       Impact factor: 4.570

7.  Differential Effects of Day/Night Cues and the Circadian Clock on the Barley Transcriptome.

Authors:  Lukas M Müller; Laurent Mombaerts; Artem Pankin; Seth J Davis; Alex A R Webb; Jorge Goncalves; Maria von Korff
Journal:  Plant Physiol       Date:  2020-03-30       Impact factor: 8.340

8.  Ectopic expression of phloem motor protein pea forisome PsSEO-F1 enhances salinity stress tolerance in tobacco.

Authors:  Vineet Kumar Srivastava; Shailendra Raikwar; Renu Tuteja; Narendra Tuteja
Journal:  Plant Cell Rep       Date:  2016-01-29       Impact factor: 4.570

9.  Warm nights disrupt transcriptome rhythms in field-grown rice panicles.

Authors:  Jigar S Desai; Lovely Mae F Lawas; Ashlee M Valente; Adam R Leman; Dmitry O Grinevich; S V Krishna Jagadish; Colleen J Doherty
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

10.  ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass).

Authors:  Jeanne Aude Christiane Gardin; Jérôme Gouzy; Sébastien Carrère; Christophe Délye
Journal:  BMC Genomics       Date:  2015-08-12       Impact factor: 3.969

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